Experiment set1S313 for Rhodopseudomonas palustris CGA009

Compare to:

Azelaic acid carbon source; anaerobic

200 most important genes:

  gene name fitness t score description  
TX73_024775 -5.1 -18.4 O-succinylhomoserine sulfhydrylase compare
TX73_001320 -3.9 -18.4 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_019180 -3.8 -3.6 methionine synthase compare
TX73_019175 -3.5 -4.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_019145 -3.4 -6.1 prephenate dehydratase compare
TX73_005330 -2.9 -3.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_010825 -2.8 -2.0 XapX domain-containing protein compare
TX73_005530 -2.8 -2.7 FAD-binding oxidoreductase compare
TX73_021105 -2.7 -10.8 Lrp/AsnC family transcriptional regulator compare
TX73_013760 -2.7 -2.3 beta-1-3, beta-1-6-glucan biosynthesis protein compare
TX73_008350 -2.2 -6.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_005625 -2.2 -9.0 acyl-CoA dehydrogenase compare
TX73_015855 -2.2 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_013960 -2.1 -4.4 pyridoxine 5'-phosphate synthase compare
TX73_002315 -2.1 -6.9 rRNA maturation RNase YbeY compare
TX73_021835 -2.0 -5.9 DUF934 domain-containing protein compare
TX73_018540 -2.0 -13.1 phosphomethylpyrimidine synthase ThiC compare
TX73_024670 -2.0 -7.7 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_010535 -1.9 -9.5 biotin synthase BioB compare
TX73_018875 -1.9 -8.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_018140 -1.9 -3.3 ribbon-helix-helix domain-containing protein compare
TX73_019235 -1.8 -6.5 pimeloyl-CoA dehydrogenase small subunit compare
TX73_000335 -1.8 -3.9 30S ribosomal protein S1 compare
TX73_019240 -1.8 -8.7 pimeloyl-CoA dehydrogenase large subunit compare
TX73_024230 -1.8 -4.4 trehalose-phosphatase compare
TX73_010695 -1.7 -2.0 EscE/YscE/SsaE family type III secretion system needle protein co-chaperone compare
TX73_012525 -1.7 -4.4 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_003890 -1.6 -10.9 adenylyl-sulfate kinase compare
TX73_002260 -1.6 -1.7 30S ribosome-binding factor RbfA compare
TX73_016180 -1.6 -2.1 50S ribosomal protein L33 compare
TX73_024675 -1.6 -1.9 FAD-binding protein compare
TX73_004835 -1.6 -7.1 tetratricopeptide repeat protein compare
TX73_021840 -1.6 -4.8 nitrite/sulfite reductase compare
TX73_024830 -1.5 -2.6 phosphate ABC transporter ATP-binding protein PstB compare
TX73_001735 -1.5 -2.7 molecular chaperone DnaJ compare
TX73_000395 -1.5 -1.7 nucleotidyltransferase family protein compare
TX73_013965 -1.5 -1.2 holo-ACP synthase compare
TX73_003885 -1.5 -8.1 sulfate adenylyltransferase subunit 2 compare
TX73_018135 -1.4 -3.2 DUF4169 family protein compare
TX73_016325 -1.4 -2.8 hypothetical protein compare
TX73_001065 -1.4 -1.3 heme exporter protein CcmD compare
TX73_023110 -1.3 -4.1 pyridoxal-dependent decarboxylase compare
TX73_006455 -1.3 -2.3 adenosylcobinamide-GDP ribazoletransferase compare
TX73_017895 -1.3 -2.5 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
TX73_022570 -1.2 -4.2 redox-regulated ATPase YchF compare
TX73_018335 -1.2 -3.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
TX73_018930 -1.2 -2.5 sulfurtransferase TusA family protein compare
TX73_002960 -1.2 -3.5 ActR/PrrA/RegA family redox response regulator transcription factor compare
TX73_014180 -1.2 -2.7 outer membrane protein assembly factor BamE compare
TX73_022590 -1.1 -1.4 prolipoprotein diacylglyceryl transferase compare
TX73_012935 -1.1 -3.1 LL-diaminopimelate aminotransferase compare
TX73_016020 -1.1 -2.2 tetratricopeptide repeat protein compare
TX73_010460 -1.1 -5.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
TX73_001570 -1.1 -2.0 protein-export chaperone SecB compare
TX73_002300 -1.1 -3.5 helix-turn-helix domain-containing protein compare
TX73_003880 -1.0 -3.8 phosphoadenylyl-sulfate reductase compare
TX73_018705 -1.0 -3.6 energy-dependent translational throttle protein EttA compare
TX73_015245 -1.0 -1.2 NADH-quinone oxidoreductase subunit NuoI compare
TX73_011500 -1.0 -1.8 putative entry exclusion protein TrbK-alt compare
TX73_009795 -0.9 -1.7 phage tail assembly chaperone compare
TX73_017010 -0.9 -1.7 TetR/AcrR family transcriptional regulator compare
TX73_012070 -0.9 -1.5 YtxH domain-containing protein compare
TX73_021860 -0.9 -2.5 CsbD family protein compare
TX73_002890 -0.9 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
TX73_019255 -0.9 -5.5 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
TX73_015240 -0.9 -1.2 NADH-quinone oxidoreductase subunit J compare
TX73_016285 -0.9 -1.6 serine hydrolase compare
TX73_024835 -0.9 -3.5 phosphate ABC transporter permease PstA compare
TX73_023355 -0.9 -5.0 hypothetical protein compare
TX73_021975 -0.8 -3.5 CBS domain-containing protein compare
TX73_003225 -0.8 -2.2 tRNA pseudouridine(38-40) synthase TruA compare
TX73_016090 -0.8 -0.9 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC compare
TX73_003705 -0.8 -4.4 cobaltochelatase subunit CobN compare
TX73_000270 -0.7 -3.2 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_007285 -0.7 -5.0 CusA/CzcA family heavy metal efflux RND transporter compare
TX73_021850 -0.7 -4.1 siroheme synthase CysG compare
TX73_002270 -0.7 -1.2 RNA-binding protein compare
TX73_010135 -0.7 -1.8 TetR/AcrR family transcriptional regulator compare
TX73_011335 -0.7 -4.0 RlmE family RNA methyltransferase compare
TX73_000980 -0.7 -3.5 2-oxoglutarate dehydrogenase E1 component compare
TX73_003860 -0.7 -4.0 sulfate ABC transporter ATP-binding protein compare
TX73_003700 -0.7 -4.2 cobalamin biosynthesis protein CobW compare
TX73_003870 -0.7 -2.8 sulfate ABC transporter permease subunit CysT compare
TX73_006580 -0.7 -2.1 metalloregulator ArsR/SmtB family transcription factor compare
TX73_000815 -0.7 -1.5 50S ribosomal protein L21 compare
TX73_021000 -0.7 -4.2 NAD-dependent epimerase/dehydratase family protein compare
TX73_006630 -0.7 -1.6 transposase compare
TX73_014645 -0.7 -5.2 phytoene/squalene synthase family protein compare
TX73_001350 -0.7 -2.2 HAMP domain-containing protein compare
TX73_010270 -0.6 -1.7 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_006700 -0.6 -3.1 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_009690 -0.6 -2.2 Flp family type IVb pilin compare
TX73_021845 -0.6 -0.9 DUF2849 domain-containing protein compare
TX73_007290 -0.6 -4.6 efflux RND transporter periplasmic adaptor subunit compare
TX73_022130 -0.6 -1.6 DUF1013 domain-containing protein compare
TX73_019960 -0.6 -1.9 hypothetical protein compare
TX73_013105 -0.6 -2.4 hypothetical protein compare
TX73_022760 -0.6 -1.6 metallophosphoesterase compare
TX73_003830 -0.6 -3.4 MoxR family ATPase compare
TX73_020665 -0.6 -2.4 HAD family hydrolase compare
TX73_003865 -0.6 -3.1 sulfate ABC transporter permease subunit CysW compare
TX73_022635 -0.6 -3.1 ATP-binding protein compare
TX73_010745 -0.6 -1.8 cobalamin biosynthesis protein compare
TX73_005960 -0.6 -2.1 exodeoxyribonuclease VII large subunit compare
TX73_016555 -0.6 -3.1 formate/nitrite transporter family protein compare
TX73_020585 -0.6 -1.9 cytochrome c compare
TX73_013355 -0.6 -4.3 protein-L-isoaspartate O-methyltransferase compare
TX73_000405 -0.6 -1.8 bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE/phosphotransferase compare
TX73_013255 -0.6 -2.1 amino acid ABC transporter ATP-binding protein compare
TX73_001825 -0.6 -3.9 translation elongation factor 4 compare
TX73_016515 -0.6 -2.1 Zn-ribbon domain-containing OB-fold protein compare
TX73_018925 -0.6 -1.9 DUF6496 domain-containing protein compare
TX73_015455 -0.6 -1.1 IS3-like element ISRpa2 family transposase compare
TX73_002340 -0.6 -2.6 ribosomal protein S18-alanine N-acetyltransferase compare
TX73_005760 -0.5 -4.4 EAL domain-containing protein compare
TX73_003875 -0.5 -2.8 sulfate ABC transporter substrate-binding protein compare
TX73_014035 -0.5 -1.2 DUF1656 domain-containing protein compare
TX73_013800 -0.5 -1.9 succinate dehydrogenase assembly factor 2 compare
TX73_000570 -0.5 -1.2 sulfite exporter TauE/SafE family protein compare
TX73_012585 -0.5 -3.0 response regulator compare
TX73_012805 -0.5 -3.3 DEAD/DEAH box helicase compare
TX73_005640 -0.5 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
TX73_011515 -0.5 -2.3 VirB3 family type IV secretion system protein compare
TX73_013225 -0.5 -1.5 glycosyltransferase family 2 protein compare
TX73_023835 -0.5 -3.0 lipopolysaccharide biosynthesis protein compare
TX73_010985 -0.5 -2.5 hypothetical protein compare
TX73_015590 -0.5 -0.9 light-harvesting protein compare
TX73_018080 -0.5 -2.5 FtsH protease activity modulator HflK compare
TX73_005645 -0.5 -2.4 hypothetical protein compare
TX73_006615 -0.5 -1.8 hypothetical protein compare
TX73_005115 -0.5 -2.1 cysteine-rich small domain-containing protein compare
TX73_020740 -0.5 -0.9 hypothetical protein compare
TX73_011170 -0.5 -2.2 co-chaperone GroES compare
TX73_010740 -0.5 -1.4 precorrin-4 C(11)-methyltransferase compare
TX73_005435 -0.5 -2.1 hypothetical protein compare
TX73_021375 -0.5 -1.7 DUF6527 family protein compare
TX73_004485 -0.5 -3.5 type III PLP-dependent enzyme compare
TX73_022290 -0.5 -0.8 hypothetical protein compare
TX73_016700 -0.5 -1.8 adenylate kinase compare
TX73_022015 -0.5 -2.2 response regulator compare
TX73_009430 -0.5 -2.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
TX73_009930 -0.5 -1.3 ferritin family protein compare
TX73_004275 -0.5 -2.0 organic hydroperoxide resistance protein compare
TX73_024970 -0.5 -1.9 hypothetical protein compare
TX73_009180 -0.5 -1.1 DUF3237 domain-containing protein compare
TX73_019025 -0.5 -0.5 translation initiation factor IF-1 compare
TX73_001950 -0.5 -2.6 ChaB family protein compare
TX73_008365 -0.5 -1.0 chemotaxis protein CheW compare
TX73_008200 -0.5 -1.9 hypothetical protein compare
TX73_010010 -0.5 -2.0 fumarylacetoacetate hydrolase family protein compare
TX73_018695 -0.5 -2.5 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_024845 -0.5 -2.8 phosphate ABC transporter substrate-binding protein PstS compare
TX73_002045 -0.5 -1.3 phosphatase PAP2 family protein compare
TX73_015935 -0.5 -2.3 50S ribosomal protein L9 compare
TX73_010980 -0.5 -1.9 hypothetical protein compare
TX73_023365 -0.4 -1.5 hypothetical protein compare
TX73_006570 -0.4 -2.5 DUF2189 domain-containing protein compare
TX73_005335 -0.4 -3.1 tetratricopeptide repeat protein compare
TX73_015975 -0.4 -1.9 hypothetical protein compare
TX73_007630 -0.4 -2.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
TX73_024525 -0.4 -3.7 2-oxoacid:acceptor oxidoreductase family protein compare
TX73_020595 -0.4 -0.7 hypothetical protein compare
TX73_002805 -0.4 -1.1 disulfide bond formation protein B compare
TX73_005660 -0.4 -1.7 cytidine deaminase compare
TX73_010300 -0.4 -1.3 hypothetical protein compare
TX73_006270 -0.4 -1.6 hypothetical protein compare
TX73_024530 -0.4 -3.5 sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein compare
TX73_006185 -0.4 -1.5 DUF1194 domain-containing protein compare
TX73_006405 -0.4 -2.5 YihY/virulence factor BrkB family protein compare
TX73_005685 -0.4 -2.0 nuclear transport factor 2 family protein compare
TX73_004620 -0.4 -1.6 DUF459 domain-containing protein compare
TX73_006785 -0.4 -1.2 DUF3551 domain-containing protein compare
TX73_012510 -0.4 -2.5 porin compare
TX73_021725 -0.4 -2.1 DUF1244 domain-containing protein compare
TX73_007705 -0.4 -1.5 hypothetical protein compare
TX73_020450 -0.4 -1.8 DUF2147 domain-containing protein compare
TX73_013630 -0.4 -2.0 ABC transporter ATP-binding protein compare
TX73_007900 -0.4 -3.0 transcriptional regulator PpsR compare
TX73_020720 -0.4 -2.6 radical SAM protein compare
TX73_006000 -0.4 -1.0 molybdopterin converting factor subunit 1 compare
TX73_024570 -0.4 -2.4 thioesterase family protein compare
TX73_009495 -0.4 -1.9 DUF3649 domain-containing protein compare
TX73_004880 -0.4 -1.7 cell division protein ZapA compare
TX73_017185 -0.4 -2.2 TIGR04325 family methyltransferase compare
TX73_005800 -0.4 -1.7 helix-turn-helix domain containing protein compare
TX73_021115 -0.4 -2.8 LysR family transcriptional regulator compare
TX73_022160 -0.4 -0.8 hypothetical protein compare
TX73_023360 -0.4 -2.4 RusA family crossover junction endodeoxyribonuclease compare
TX73_010545 -0.4 -1.7 2-isopropylmalate synthase compare
TX73_020290 -0.4 -1.3 flagellar biosynthesis repressor FlbT compare
TX73_015265 -0.4 -2.3 hypothetical protein compare
TX73_006830 -0.4 -1.6 cupin domain-containing protein compare
TX73_003740 -0.4 -2.8 iron ABC transporter permease compare
TX73_016080 -0.4 -1.6 BrnA antitoxin family protein compare
TX73_013260 -0.4 -1.2 hypothetical protein compare
TX73_012965 -0.4 -1.7 hypothetical protein compare
TX73_014440 -0.4 -2.5 class I SAM-dependent methyltransferase compare
TX73_006085 -0.4 -2.9 DUF1285 domain-containing protein compare
TX73_009730 -0.4 -2.4 phage major capsid protein compare
TX73_025085 -0.4 -1.6 zinc ribbon domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodopseudomonas palustris CGA009 in carbon source experiments

For carbon source Azelaic acid across organisms