Experiment set1S194 for Desulfovibrio vulgaris Hildenborough JW710
Lactate-Sulfate (60-30 mM) minimal (MoLS4)
Group: respiratory growthMedia: MoLS4, pH=7.2
Culturing: DvH_JW710, 24 deep-well microplate, Anaerobic, at 30 (C), shaken=0 rpm
By: Valentine on 4/6/2016
Media components: 30 mM Sodium sulfate, 60 mM Sodium D,L-Lactate, 20 mM Ammonium chloride, 30 mM Tris hydrochloride, 0.12 mM EDTA, 1 mM Sodium sulfide nonahydrate, 8 mM Magnesium chloride hexahydrate, 0.6 mM Calcium chloride, 2 mM Potassium phosphate dibasic, 60 uM Iron (II) chloride tetrahydrate, Desulfovibrio trace elements (15 uM Manganese (II) chloride tetrahydrate, 7.8 uM Cobalt chloride hexahydrate, 9 uM Zinc chloride, 1.26 uM Sodium molybdate, 1.92 uM Boric Acid, 2.28 uM Nickel (II) sulfate hexahydrate, 0.06 uM copper (II) chloride dihydrate, 0.21 uM Sodium selenite pentahydrate, 0.144 uM Sodium tungstate dihydrate), Thauer's vitamin mix (0.01 mg/L Pyridoxine HCl, 0.005 mg/L 4-Aminobenzoic acid, 0.005 mg/L Lipoic acid, 0.005 mg/L Nicotinic Acid, 0.005 mg/L Riboflavin, 0.005 mg/L Thiamine HCl, 0.005 mg/L calcium pantothenate, 0.002 mg/L biotin, 0.002 mg/L Folic Acid, 0.0001 mg/L Cyanocobalamin, 0.2 mg/L Choline chloride)
Specific Phenotypes
For 1 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glycerol and Glycerol-3-phosphate Uptake and Utilization | 1 |
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycerol-3-phosphate shuttle | 2 | 2 | 1 |
| CDP-diacylglycerol biosynthesis I | 4 | 4 | 1 |
| CDP-diacylglycerol biosynthesis II | 4 | 4 | 1 |
| CDP-diacylglycerol biosynthesis III | 5 | 3 | 1 |
| phosphatidate biosynthesis (yeast) | 5 | 3 | 1 |
| glucosylglycerol biosynthesis | 5 | 2 | 1 |
| phosphatidylglycerol biosynthesis I | 6 | 6 | 1 |
| phosphatidylglycerol biosynthesis II | 6 | 6 | 1 |
| 1,3-propanediol biosynthesis (engineered) | 9 | 4 | 1 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 10 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 9 | 1 |
| superpathway of phospholipid biosynthesis II (plants) | 28 | 10 | 1 |