Experiment set1S184 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

200 most important genes:

  gene name fitness t score description  
SGL_RS15130 -7.2 -9.8 dTDP-glucose 4,6-dehydratase compare
SGL_RS14930 -6.6 -4.6 type I methionyl aminopeptidase compare
SGL_RS17230 -6.1 -5.9 L-aspartate oxidase compare
SGL_RS15425 -5.9 -4.1 cobalamin biosynthesis protein CobW compare
SGL_RS16705 -5.9 -4.0 diadenylate cyclase CdaA compare
SGL_RS17330 -5.8 -4.0 biosynthetic arginine decarboxylase compare
SGL_RS02460 -5.5 -3.8 phosphate signaling complex protein PhoU compare
SGL_RS12335 -5.5 -5.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS17405 -5.1 -6.9 L-2-hydroxyglutarate oxidase compare
SGL_RS11025 -5.0 -7.6 oxidoreductase compare
SGL_RS03520 -5.0 -4.8 ABC transporter permease compare
SGL_RS03085 -4.8 -3.8 DUF2862 domain-containing protein compare
SGL_RS12770 -4.6 -3.2 uroporphyrinogen-III C-methyltransferase compare
SGL_RS06595 -4.6 -4.5 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS03625 -4.6 -8.2 glycosyltransferase family 1 protein compare
SGL_RS18270 -4.5 -5.2 family 10 glycosylhydrolase compare
SGL_RS03840 -4.5 -3.0 adenylyl-sulfate kinase compare
SGL_RS07200 -4.4 -4.3 LCP family protein compare
SGL_RS12490 -4.3 -4.1 glutamate--cysteine ligase compare
SGL_RS03845 -4.2 -7.9 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS06590 -4.1 -2.9 nitrate ABC transporter permease compare
SGL_RS03540 -4.1 -7.1 ABC transporter ATP-binding protein compare
SGL_RS11305 -4.1 -4.0 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS06430 -4.1 -2.8 glycosyltransferase family 2 protein compare
SGL_RS14430 -4.0 -2.8 cobalt ECF transporter T component CbiQ compare
SGL_RS02095 -4.0 -6.6 dTDP-4-dehydrorhamnose reductase compare
SGL_RS13870 -4.0 -3.9 rRNA maturation RNase YbeY compare
SGL_RS04490 -4.0 -3.8 2TM domain-containing protein compare
SGL_RS02850 -4.0 -6.9 uracil phosphoribosyltransferase compare
SGL_RS12870 -4.0 -5.3 YqeG family HAD IIIA-type phosphatase compare
SGL_RS12745 -4.0 -2.7 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS11000 -3.9 -2.7 sulfate adenylyltransferase compare
SGL_RS02260 -3.8 -3.6 HEAT repeat domain-containing protein compare
SGL_RS07170 -3.8 -3.6 glycine cleavage system protein GcvH compare
SGL_RS16100 -3.8 -5.7 heavy metal translocating P-type ATPase compare
SGL_RS16690 -3.8 -6.2 adenosine kinase compare
SGL_RS14560 -3.7 -4.2 hypothetical protein compare
SGL_RS03550 -3.7 -17.3 CDP-glucose 4,6-dehydratase compare
SGL_RS12575 -3.6 -2.5 riboflavin synthase compare
SGL_RS13510 -3.6 -8.2 transglycosylase domain-containing protein compare
SGL_RS02145 -3.5 -11.9 metallophosphoesterase compare
SGL_RS04335 -3.5 -6.1 GNAT family N-acetyltransferase compare
SGL_RS05470 -3.5 -3.3 dihydropteroate synthase compare
SGL_RS16880 -3.4 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS03790 -3.4 -2.3 GTPase ObgE compare
SGL_RS06585 -3.4 -3.3 nitrate ABC transporter ATP-binding protein compare
SGL_RS08175 -3.4 -2.3 serine hydrolase compare
SGL_RS12400 -3.3 -2.3 lysophospholipid acyltransferase family protein compare
SGL_RS17520 -3.3 -2.3 DUF3352 domain-containing protein compare
SGL_RS11325 -3.3 -6.1 pitrilysin family protein compare
SGL_RS14435 -3.2 -2.2 cobalt transporter CbiM compare
SGL_RS17305 -3.2 -2.2 pyrroline-5-carboxylate reductase compare
SGL_RS15560 -3.2 -2.2 dethiobiotin synthase compare
SGL_RS08275 -3.2 -2.2 tetratricopeptide repeat protein compare
SGL_RS05435 -3.2 -2.2 heavy metal translocating P-type ATPase compare
SGL_RS05980 -3.2 -3.7 hypothetical protein compare
SGL_RS12585 -3.2 -3.0 ABC transporter permease subunit compare
SGL_RS03185 -3.1 -3.0 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS16670 -3.1 -16.3 DUF5942 domain-containing protein compare
SGL_RS09385 -3.1 -2.1 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS18215 -3.1 -3.9 pentapeptide repeat-containing protein compare
SGL_RS03850 -3.1 -6.0 biopolymer transporter ExbD compare
SGL_RS02475 -3.1 -1.9 YlxR family protein compare
SGL_RS10320 -3.1 -2.1 ribosome biogenesis GTPase Der compare
SGL_RS02220 -3.0 -2.1 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS14425 -3.0 -4.0 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS03425 -3.0 -2.0 precorrin-3B C(17)-methyltransferase compare
SGL_RS03365 -3.0 -4.4 Ycf66 family protein compare
SGL_RS14920 -3.0 -2.8 cation:proton antiporter compare
SGL_RS09430 -3.0 -16.4 leucyl aminopeptidase compare
SGL_RS09890 -3.0 -2.6 DUF3007 family protein compare
SGL_RS03970 -2.9 -2.0 thiamine phosphate synthase compare
SGL_RS05440 -2.9 -2.7 ACP S-malonyltransferase compare
SGL_RS11945 -2.8 -9.6 sirohydrochlorin chelatase compare
SGL_RS13560 -2.8 -15.5 glucose-1-phosphate thymidylyltransferase compare
SGL_RS14105 -2.8 -2.7 2-succinylbenzoate--CoA ligase compare
SGL_RS16940 -2.8 -3.2 dephospho-CoA kinase compare
SGL_RS12030 -2.8 -5.2 extracellular solute-binding protein compare
SGL_RS17340 -2.8 -1.5 quinolinate synthase NadA compare
SGL_RS14505 -2.8 -6.0 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS11955 -2.7 -2.6 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS03130 -2.7 -8.7 HEAT repeat domain-containing protein compare
SGL_RS09905 -2.7 -2.6 biotin/lipoate A/B protein ligase family protein compare
SGL_RS19475 -2.7 -2.9 hypothetical protein compare
SGL_RS15045 -2.7 -8.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS08710 -2.6 -1.8 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS15530 -2.6 -3.0 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS14780 -2.6 -9.1 cyanase compare
SGL_RS17740 -2.6 -9.6 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
SGL_RS16735 -2.6 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS14445 -2.6 -3.0 hypothetical protein compare
SGL_RS13770 -2.6 -2.1 DUF3082 domain-containing protein compare
SGL_RS04550 -2.6 -5.9 glutamate 5-kinase compare
SGL_RS02580 -2.6 -3.0 DUF1818 family protein compare
SGL_RS13055 -2.6 -1.7 protein translocase subunit SecF compare
SGL_RS13550 -2.5 -2.8 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS18320 -2.5 -11.1 serine/threonine-protein kinase compare
SGL_RS16950 -2.5 -9.8 phosphoketolase compare
SGL_RS16360 -2.5 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS18180 -2.5 -5.5 ABC transporter permease compare
SGL_RS04720 -2.5 -1.7 iron uptake porin compare
SGL_RS15620 -2.5 -1.7 cobyric acid synthase CobQ compare
SGL_RS02795 -2.5 -6.2 flavin prenyltransferase UbiX compare
SGL_RS11510 -2.5 -3.6 dihydroneopterin aldolase compare
SGL_RS11135 -2.5 -2.3 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS07870 -2.4 -2.7 Ycf51 family protein compare
SGL_RS12985 -2.4 -3.2 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS06640 -2.4 -2.5 DUF4168 domain-containing protein compare
SGL_RS03060 -2.4 -4.3 phosphoadenosine phosphosulfate reductase compare
SGL_RS06755 -2.3 -5.0 bacterioferritin-associated ferredoxin compare
SGL_RS03250 -2.3 -3.7 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS13535 -2.3 -3.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS08605 -2.3 -5.1 DUF3120 domain-containing protein compare
SGL_RS08765 -2.2 -2.8 2-phosphosulfolactate phosphatase family protein compare
SGL_RS12920 -2.2 -3.2 hypothetical protein compare
SGL_RS04230 -2.2 -3.6 exonuclease subunit SbcC compare
SGL_RS11985 -2.1 -2.2 LysR family transcriptional regulator compare
SGL_RS02665 -2.1 -2.7 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS09395 -2.1 -2.7 aldo/keto reductase compare
SGL_RS06130 -2.1 -3.5 anti-sigma regulatory factor compare
SGL_RS14285 -2.1 -3.0 hypothetical protein compare
SGL_RS12545 -2.1 -2.7 GTPase Era compare
SGL_RS13685 -2.1 -9.7 ABC transporter ATP-binding protein compare
SGL_RS06440 -2.1 -6.1 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS03590 -2.1 -3.6 ATP-grasp domain-containing protein compare
SGL_RS08155 -2.1 -2.6 Spy/CpxP family protein refolding chaperone compare
SGL_RS03420 -2.0 -6.7 UbiD family decarboxylase compare
SGL_RS00195 -2.0 -9.0 glycosyltransferase family 2 protein compare
SGL_RS07840 -2.0 -2.8 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS14335 -2.0 -2.2 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS06675 -2.0 -4.9 ABC transporter ATP-binding protein compare
SGL_RS07605 -2.0 -3.0 HEAT repeat domain-containing protein compare
SGL_RS17125 -1.9 -3.6 inositol monophosphatase family protein compare
SGL_RS03560 -1.9 -7.1 class I SAM-dependent methyltransferase compare
SGL_RS18365 -1.9 -8.9 glycosyltransferase family 9 protein compare
SGL_RS04390 -1.9 -3.9 DUF433 domain-containing protein compare
SGL_RS12235 -1.9 -2.7 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS18300 -1.9 -1.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS17650 -1.8 -2.3 hypothetical protein compare
SGL_RS03555 -1.8 -9.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS13555 -1.8 -4.4 aldehyde oxygenase (deformylating) compare
SGL_RS14540 -1.8 -2.4 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS00190 -1.8 -8.8 sulfotransferase compare
SGL_RS00245 -1.7 -10.8 glycosyltransferase compare
SGL_RS15840 -1.7 -7.3 class A beta-lactamase compare
SGL_RS07565 -1.7 -4.0 hypothetical protein compare
SGL_RS06775 -1.7 -4.8 type II toxin-antitoxin system PemK/MazF family toxin compare
SGL_RS12755 -1.7 -8.6 IMS domain-containing protein compare
SGL_RS04510 -1.7 -4.6 DUF561 domain-containing protein compare
SGL_RS02375 -1.7 -7.6 DUF3086 domain-containing protein compare
SGL_RS04660 -1.7 -2.7 phycobilisome rod-core linker polypeptide compare
SGL_RS07935 -1.7 -2.8 hypothetical protein compare
SGL_RS15505 -1.7 -7.3 pentapeptide repeat-containing protein compare
SGL_RS09160 -1.7 -3.2 thioredoxin family protein compare
SGL_RS04580 -1.6 -2.2 DNA topoisomerase (ATP-hydrolyzing) subunit A compare
SGL_RS17470 -1.6 -3.3 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS05880 -1.6 -2.6 sugar ABC transporter substrate-binding protein compare
SGL_RS15500 -1.6 -10.8 hypothetical protein compare
SGL_RS15480 -1.6 -5.9 biopolymer transporter ExbD compare
SGL_RS04525 -1.6 -2.5 photosynthesis system II assembly factor Ycf48 compare
SGL_RS05465 -1.6 -2.8 hypothetical protein compare
SGL_RS09715 -1.6 -7.4 pitrilysin family protein compare
SGL_RS09295 -1.5 -11.4 alpha/beta hydrolase compare
SGL_RS09720 -1.5 -2.7 beta-ketoacyl-ACP synthase compare
SGL_RS15490 -1.5 -6.4 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS14860 -1.5 -2.9 8-amino-7-oxononanoate synthase compare
SGL_RS06020 -1.5 -4.1 sugar ABC transporter permease compare
SGL_RS03585 -1.5 -4.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS14510 -1.5 -3.0 DUF3177 family protein compare
SGL_RS10775 -1.5 -6.0 DUF3326 domain-containing protein compare
SGL_RS15370 -1.5 -4.0 DnaJ C-terminal domain-containing protein compare
SGL_RS13910 -1.5 -4.2 phasin family protein compare
SGL_RS15495 -1.4 -8.1 Fe(3+) ABC transporter substrate-binding protein compare
SGL_RS15485 -1.4 -6.4 biopolymer transporter ExbD compare
SGL_RS17860 -1.4 -3.3 Holliday junction resolvase RuvX compare
SGL_RS03380 -1.4 -6.4 sulfite reductase, ferredoxin dependent compare
SGL_RS10830 -1.4 -9.4 pyridoxamine 5'-phosphate oxidase compare
SGL_RS15870 -1.4 -4.8 septum site-determining protein MinC compare
SGL_RS08115 -1.4 -3.9 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS07940 -1.4 -5.8 type II secretion system protein compare
SGL_RS09845 -1.4 -4.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS06600 -1.4 -6.8 anthranilate phosphoribosyltransferase family protein compare
SGL_RS07930 -1.3 -7.6 hypothetical protein compare
SGL_RS13855 -1.3 -4.7 hypothetical protein compare
SGL_RS10305 -1.3 -4.0 PIN/TRAM domain-containing protein compare
SGL_RS05235 -1.3 -3.2 phycobilisome linker polypeptide compare
SGL_RS17380 -1.3 -9.7 glutamate synthase large subunit compare
SGL_RS15865 -1.3 -2.8 septum site-determining protein MinD compare
SGL_RS07650 -1.3 -7.1 aminoglycoside phosphotransferase family protein compare
SGL_RS14575 -1.3 -1.7 RNA-binding protein compare
SGL_RS04360 -1.3 -6.3 5-formyltetrahydrofolate cyclo-ligase compare
SGL_RS12210 -1.3 -7.3 type IV pilus twitching motility protein PilT compare
SGL_RS11240 -1.2 -1.3 photosystem I reaction center subunit IV compare
SGL_RS12925 -1.2 -4.0 AAA family ATPase compare
SGL_RS17495 -1.2 -4.9 peptidoglycan editing factor PgeF compare
SGL_RS08790 -1.2 -2.2 carbohydrate ABC transporter permease compare
SGL_RS06780 -1.2 -4.4 hypothetical protein compare
SGL_RS16915 -1.2 -3.1 trigger factor compare
SGL_RS00220 -1.2 -9.2 oligosaccharide flippase family protein compare
SGL_RS02955 -1.2 -2.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in carbon dioxide experiments