Experiment set1S176 for Synechocystis sp000284455 PCC 6803
growth in full media bubbled with ambient air
Group: carbon dioxideMedia: BG11C, pH=8
Culturing: Synechocystis_PCC6803_ML3, vertical flask, air bubling, growth chamber, continous light, at 30 (C), shaken=air bubling
Growth: about 5.0 generations
By: Luis on 3/17/25
Media components: 17.6 mM Sodium nitrate, 0.2 mM Potassium phosphate dibasic, 0.3 mM Magnesium Sulfate Heptahydrate, 0.24 mM Calcium chloride dihydrate, 28.5 uM Citric Acid, 0.006 g/L Ferric ammonium citrate, 2.4 uM EDTA (disodium salt), 0.2 mM Sodium bicarbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)
Specific Phenotypes
For 9 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| CO2 uptake, carboxysome | 1 |
| Serine-glyoxylate cycle | 1 |
| TCA Cycle | 1 |
| Transcription initiation, bacterial sigma factors | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Citrate cycle (TCA cycle)
- Propanoate metabolism
- C5-Branched dibasic acid metabolism
- Reductive carboxylate cycle (CO2 fixation)
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: