Experiment set1S168 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

200 most important genes:

  gene name fitness t score description  
SGL_RS11355 -8.8 -8.5 arsenite efflux transporter Acr3 compare
SGL_RS02375 -6.3 -8.7 DUF3086 domain-containing protein compare
SGL_RS12870 -6.2 -4.3 YqeG family HAD IIIA-type phosphatase compare
SGL_RS15435 -5.9 -9.5 PD40 domain-containing protein compare
SGL_RS13555 -5.7 -4.7 aldehyde oxygenase (deformylating) compare
SGL_RS03540 -5.7 -8.7 ABC transporter ATP-binding protein compare
SGL_RS03520 -5.6 -5.4 ABC transporter permease compare
SGL_RS05380 -5.3 -3.6 monovalent cation/H(+) antiporter subunit G compare
SGL_RS06800 -5.1 -8.3 glutathione synthase compare
SGL_RS18180 -5.0 -6.8 ABC transporter permease compare
SGL_RS01905 -5.0 -14.3 GDP-mannose 4,6-dehydratase compare
SGL_RS13685 -4.9 -12.3 ABC transporter ATP-binding protein compare
SGL_RS13855 -4.9 -7.4 hypothetical protein compare
SGL_RS16880 -4.9 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS03365 -4.8 -4.6 Ycf66 family protein compare
SGL_RS03775 -4.8 -4.6 membrane protein compare
SGL_RS06130 -4.8 -3.3 anti-sigma regulatory factor compare
SGL_RS12235 -4.7 -3.2 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS12490 -4.5 -3.1 glutamate--cysteine ligase compare
SGL_RS01900 -4.5 -7.9 GDP-L-fucose synthase compare
SGL_RS03840 -4.2 -2.9 adenylyl-sulfate kinase compare
SGL_RS13910 -4.1 -5.9 phasin family protein compare
SGL_RS08790 -4.1 -2.8 carbohydrate ABC transporter permease compare
SGL_RS10130 -4.0 -16.1 fatty acid desaturase compare
SGL_RS08650 -4.0 -6.1 S-layer homology domain-containing protein compare
SGL_RS12030 -4.0 -2.7 extracellular solute-binding protein compare
SGL_RS05560 -3.9 -2.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS07935 -3.9 -5.3 hypothetical protein compare
SGL_RS05370 -3.9 -2.6 Na+/H+ antiporter subunit E compare
SGL_RS17650 -3.9 -2.6 hypothetical protein compare
SGL_RS05880 -3.8 -3.6 sugar ABC transporter substrate-binding protein compare
SGL_RS16915 -3.7 -5.0 trigger factor compare
SGL_RS14920 -3.7 -2.5 cation:proton antiporter compare
SGL_RS16940 -3.7 -3.5 dephospho-CoA kinase compare
SGL_RS07200 -3.7 -2.5 LCP family protein compare
SGL_RS05375 -3.7 -3.2 hypothetical protein compare
SGL_RS13495 -3.6 -11.8 AarF/ABC1/UbiB kinase family protein compare
SGL_RS05385 -3.6 -6.3 DUF4040 domain-containing protein compare
SGL_RS07930 -3.6 -11.4 hypothetical protein compare
SGL_RS15045 -3.5 -7.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS10775 -3.5 -8.4 DUF3326 domain-containing protein compare
SGL_RS03790 -3.5 -2.4 GTPase ObgE compare
SGL_RS17520 -3.5 -2.4 DUF3352 domain-containing protein compare
SGL_RS16100 -3.5 -7.6 heavy metal translocating P-type ATPase compare
SGL_RS12770 -3.4 -4.0 uroporphyrinogen-III C-methyltransferase compare
SGL_RS07605 -3.4 -4.0 HEAT repeat domain-containing protein compare
SGL_RS13905 -3.4 -7.4 hypothetical protein compare
SGL_RS12575 -3.4 -2.3 riboflavin synthase compare
SGL_RS05440 -3.4 -2.3 ACP S-malonyltransferase compare
SGL_RS13550 -3.4 -2.0 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS13870 -3.4 -4.5 rRNA maturation RNase YbeY compare
SGL_RS15530 -3.4 -2.3 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS03250 -3.4 -5.3 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS08175 -3.3 -2.3 serine hydrolase compare
SGL_RS14860 -3.3 -2.3 8-amino-7-oxononanoate synthase compare
SGL_RS09395 -3.3 -2.3 aldo/keto reductase compare
SGL_RS06430 -3.3 -2.2 glycosyltransferase family 2 protein compare
SGL_RS14540 -3.3 -3.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS13900 -3.2 -13.5 AI-2E family transporter compare
SGL_RS04510 -3.2 -7.3 DUF561 domain-containing protein compare
SGL_RS03970 -3.2 -2.2 thiamine phosphate synthase compare
SGL_RS06675 -3.1 -5.1 ABC transporter ATP-binding protein compare
SGL_RS13535 -3.1 -3.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS13055 -3.1 -2.1 protein translocase subunit SecF compare
SGL_RS09385 -3.1 -2.1 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS09720 -3.1 -2.1 beta-ketoacyl-ACP synthase compare
SGL_RS02665 -3.1 -3.3 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS10320 -3.1 -2.9 ribosome biogenesis GTPase Der compare
SGL_RS11000 -3.1 -5.0 sulfate adenylyltransferase compare
SGL_RS06020 -3.0 -5.3 sugar ABC transporter permease compare
SGL_RS05390 -3.0 -5.8 Na(+)/H(+) antiporter subunit B compare
SGL_RS14335 -3.0 -2.0 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS17685 -2.9 -12.1 ArsB/NhaD family transporter compare
SGL_RS13510 -2.9 -6.9 transglycosylase domain-containing protein compare
SGL_RS15620 -2.9 -3.3 cobyric acid synthase CobQ compare
SGL_RS14430 -2.8 -4.2 cobalt ECF transporter T component CbiQ compare
SGL_RS14905 -2.8 -4.9 30S ribosomal protein PSRP-3 compare
SGL_RS11035 -2.8 -3.0 LapA family protein compare
SGL_RS05980 -2.8 -4.5 hypothetical protein compare
SGL_RS12400 -2.8 -2.6 lysophospholipid acyltransferase family protein compare
SGL_RS08115 -2.8 -5.4 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS12540 -2.7 -9.6 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS14025 -2.7 -10.9 gamma-glutamyl-phosphate reductase compare
SGL_RS06355 -2.7 -3.5 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS08710 -2.6 -3.9 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS12335 -2.6 -6.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS03625 -2.6 -8.7 glycosyltransferase family 1 protein compare
SGL_RS16360 -2.6 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS16735 -2.6 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS10305 -2.6 -7.2 PIN/TRAM domain-containing protein compare
SGL_RS06585 -2.6 -3.4 nitrate ABC transporter ATP-binding protein compare
SGL_RS11510 -2.6 -3.1 dihydroneopterin aldolase compare
SGL_RS12340 -2.6 -12.5 hypothetical protein compare
SGL_RS12930 -2.5 -2.8 DUF1257 domain-containing protein compare
SGL_RS07840 -2.5 -2.8 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS08765 -2.5 -2.3 2-phosphosulfolactate phosphatase family protein compare
SGL_RS04230 -2.5 -3.6 exonuclease subunit SbcC compare
SGL_RS02145 -2.5 -10.8 metallophosphoesterase compare
SGL_RS14585 -2.5 -2.9 TolB family protein compare
SGL_RS18300 -2.5 -3.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS14445 -2.5 -2.8 hypothetical protein compare
SGL_RS05465 -2.4 -3.5 hypothetical protein compare
SGL_RS08275 -2.4 -1.6 tetratricopeptide repeat protein compare
SGL_RS15425 -2.4 -6.8 cobalamin biosynthesis protein CobW compare
SGL_RS12585 -2.4 -2.8 ABC transporter permease subunit compare
SGL_RS03425 -2.4 -1.6 precorrin-3B C(17)-methyltransferase compare
SGL_RS06595 -2.4 -5.3 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS09845 -2.3 -6.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS03085 -2.3 -6.3 DUF2862 domain-containing protein compare
SGL_RS16545 -2.3 -8.7 LdpA C-terminal domain-containing domain compare
SGL_RS02260 -2.3 -2.9 HEAT repeat domain-containing protein compare
SGL_RS14425 -2.3 -4.1 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS18170 -2.3 -2.3 PspA/IM30 family protein compare
SGL_RS12910 -2.2 -7.0 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
SGL_RS03185 -2.2 -2.1 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS05470 -2.2 -3.1 dihydropteroate synthase compare
SGL_RS13195 -2.2 -5.5 Ig-like domain-containing protein compare
SGL_RS02580 -2.1 -2.5 DUF1818 family protein compare
SGL_RS06440 -2.1 -4.7 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS15700 -2.1 -9.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS02220 -2.1 -3.0 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS02460 -2.1 -3.7 phosphate signaling complex protein PhoU compare
SGL_RS04525 -2.1 -2.7 photosynthesis system II assembly factor Ycf48 compare
SGL_RS04775 -2.1 -4.8 alpha/beta hydrolase compare
SGL_RS03550 -2.1 -12.1 CDP-glucose 4,6-dehydratase compare
SGL_RS06590 -2.0 -4.8 nitrate ABC transporter permease compare
SGL_RS14435 -2.0 -2.1 cobalt transporter CbiM compare
SGL_RS14045 -2.0 -5.8 hypothetical protein compare
SGL_RS06640 -2.0 -1.9 DUF4168 domain-containing protein compare
SGL_RS04735 -2.0 -2.9 hypothetical protein compare
SGL_RS14105 -2.0 -3.1 2-succinylbenzoate--CoA ligase compare
SGL_RS09970 -2.0 -2.0 DUF29 domain-containing protein compare
SGL_RS02850 -2.0 -6.7 uracil phosphoribosyltransferase compare
SGL_RS17305 -2.0 -2.8 pyrroline-5-carboxylate reductase compare
SGL_RS18320 -1.9 -10.5 serine/threonine-protein kinase compare
SGL_RS17330 -1.9 -8.5 biosynthetic arginine decarboxylase compare
SGL_RS18095 -1.9 -6.5 TIGR03943 family protein compare
SGL_RS17470 -1.8 -3.5 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS06755 -1.8 -6.8 bacterioferritin-associated ferredoxin compare
SGL_RS02520 -1.8 -3.9 thioredoxin-dependent thiol peroxidase compare
SGL_RS14510 -1.8 -4.4 DUF3177 family protein compare
SGL_RS02525 -1.8 -4.1 hypothetical protein compare
SGL_RS04390 -1.8 -4.4 DUF433 domain-containing protein compare
SGL_RS10155 -1.8 -3.9 hypothetical protein compare
SGL_RS17125 -1.7 -2.4 inositol monophosphatase family protein compare
SGL_RS09890 -1.7 -3.5 DUF3007 family protein compare
SGL_RS17405 -1.7 -5.2 L-2-hydroxyglutarate oxidase compare
SGL_RS15560 -1.7 -1.9 dethiobiotin synthase compare
SGL_RS15865 -1.7 -3.1 septum site-determining protein MinD compare
SGL_RS07870 -1.7 -3.0 Ycf51 family protein compare
SGL_RS11885 -1.7 -8.4 fatty acid desaturase compare
SGL_RS11135 -1.7 -2.5 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS04720 -1.7 -1.6 iron uptake porin compare
SGL_RS04490 -1.7 -1.8 2TM domain-containing protein compare
SGL_RS09820 -1.6 -3.4 ribosome maturation factor RimM compare
SGL_RS20080 -1.6 -1.6 DUF4335 domain-containing protein compare
SGL_RS02795 -1.6 -5.5 flavin prenyltransferase UbiX compare
SGL_RS03450 -1.6 -6.0 permease compare
SGL_RS16950 -1.6 -7.6 phosphoketolase compare
SGL_RS13370 -1.6 -3.0 exonuclease SbcCD subunit D compare
SGL_RS11675 -1.5 -4.0 chromophore lyase CpcT/CpeT compare
SGL_RS03190 -1.5 -1.6 universal stress protein compare
SGL_RS11985 -1.5 -1.6 LysR family transcriptional regulator compare
SGL_RS03090 -1.5 -10.2 ArsA family ATPase compare
SGL_RS10425 -1.5 -5.6 aromatic ring-hydroxylating dioxygenase subunit alpha compare
SGL_RS00830 -1.5 -3.3 hypothetical protein compare
SGL_RS15655 -1.5 -8.9 asparaginase compare
SGL_RS14930 -1.4 -5.4 type I methionyl aminopeptidase compare
SGL_RS11945 -1.4 -7.4 sirohydrochlorin chelatase compare
SGL_RS12925 -1.4 -4.6 AAA family ATPase compare
SGL_RS10815 -1.4 -3.0 hypothetical protein compare
SGL_RS08535 -1.4 -2.9 NIL domain-containing protein compare
SGL_RS03950 -1.4 -6.0 homocysteine biosynthesis protein compare
SGL_RS15370 -1.4 -2.9 DnaJ C-terminal domain-containing protein compare
SGL_RS09160 -1.4 -2.7 thioredoxin family protein compare
SGL_RS11025 -1.4 -5.2 oxidoreductase compare
SGL_RS12920 -1.4 -1.5 hypothetical protein compare
SGL_RS00825 -1.4 -5.1 hypothetical protein compare
SGL_RS08080 -1.3 -3.4 Fur family transcriptional regulator compare
SGL_RS12755 -1.3 -8.0 IMS domain-containing protein compare
SGL_RS17130 -1.3 -8.8 hypothetical protein compare
SGL_RS11760 -1.3 -6.9 radical SAM protein compare
SGL_RS09975 -1.3 -2.7 DUF29 domain-containing protein compare
SGL_RS08605 -1.3 -3.6 DUF3120 domain-containing protein compare
SGL_RS08495 -1.3 -6.8 DUF3370 domain-containing protein compare
SGL_RS16670 -1.3 -8.5 DUF5942 domain-containing protein compare
SGL_RS16860 -1.3 -6.1 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS03590 -1.2 -3.9 ATP-grasp domain-containing protein compare
SGL_RS11495 -1.2 -1.3 Ig-like domain-containing protein compare
SGL_RS17270 -1.2 -3.2 hypothetical protein compare
SGL_RS10420 -1.2 -2.4 methionine ABC transporter ATP-binding protein compare
SGL_RS18215 -1.2 -3.2 pentapeptide repeat-containing protein compare
SGL_RS03060 -1.2 -3.1 phosphoadenosine phosphosulfate reductase compare
SGL_RS11360 -1.2 -7.5 arsenical resistance protein ArsH compare
SGL_RS13465 -1.2 -6.5 class II fumarate hydratase compare
SGL_RS14320 -1.2 -7.6 site-2 protease family protein compare
SGL_RS12515 -1.2 -1.9 hypothetical protein compare
SGL_RS15870 -1.2 -4.6 septum site-determining protein MinC compare
SGL_RS10370 -1.1 -3.7 anthranilate synthase component I compare
SGL_RS16705 -1.1 -3.9 diadenylate cyclase CdaA compare


Specific Phenotypes

For 1 genes in this experiment

For metal stress Sodium m-arsenite in Synechocystis sp000284455 PCC 6803

For metal stress Sodium m-arsenite across organisms