Experiment set1S156 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media supplemented with 3 .M CuSO4

200 most important genes:

  gene name fitness t score description  
SGL_RS03520 -6.5 -4.5 ABC transporter permease compare
SGL_RS14905 -5.6 -3.9 30S ribosomal protein PSRP-3 compare
SGL_RS03540 -5.6 -6.6 ABC transporter ATP-binding protein compare
SGL_RS03625 -5.5 -11.0 glycosyltransferase family 1 protein compare
SGL_RS03550 -5.4 -16.3 CDP-glucose 4,6-dehydratase compare
SGL_RS02460 -5.0 -3.4 phosphate signaling complex protein PhoU compare
SGL_RS06675 -4.7 -3.2 ABC transporter ATP-binding protein compare
SGL_RS13910 -4.7 -4.5 phasin family protein compare
SGL_RS03590 -4.5 -5.4 ATP-grasp domain-containing protein compare
SGL_RS17405 -4.5 -7.4 L-2-hydroxyglutarate oxidase compare
SGL_RS17125 -4.4 -4.3 inositol monophosphatase family protein compare
SGL_RS03555 -4.4 -14.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS12870 -4.4 -4.5 YqeG family HAD IIIA-type phosphatase compare
SGL_RS05435 -4.4 -3.0 heavy metal translocating P-type ATPase compare
SGL_RS13510 -4.3 -4.1 transglycosylase domain-containing protein compare
SGL_RS09295 -4.1 -15.5 alpha/beta hydrolase compare
SGL_RS14425 -4.1 -2.8 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS03585 -4.1 -8.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS12100 -4.0 -19.5 AAA-like domain-containing protein compare
SGL_RS19585 -4.0 -3.3 hypothetical protein compare
SGL_RS03560 -4.0 -9.1 class I SAM-dependent methyltransferase compare
SGL_RS05880 -3.9 -2.7 sugar ABC transporter substrate-binding protein compare
SGL_RS03545 -3.9 -5.9 glucose-1-phosphate cytidylyltransferase compare
SGL_RS16670 -3.8 -13.8 DUF5942 domain-containing protein compare
SGL_RS07130 -3.8 -15.0 AAA-like domain-containing protein compare
SGL_RS12490 -3.8 -3.7 glutamate--cysteine ligase compare
SGL_RS10130 -3.7 -13.7 fatty acid desaturase compare
SGL_RS08790 -3.7 -2.5 carbohydrate ABC transporter permease compare
SGL_RS12745 -3.7 -2.5 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS06020 -3.7 -3.5 sugar ABC transporter permease compare
SGL_RS06130 -3.6 -3.4 anti-sigma regulatory factor compare
SGL_RS13465 -3.6 -9.1 class II fumarate hydratase compare
SGL_RS09305 -3.6 -4.8 adenosyl-hopene transferase HpnH compare
SGL_RS07565 -3.5 -8.0 hypothetical protein compare
SGL_RS18270 -3.4 -4.6 family 10 glycosylhydrolase compare
SGL_RS12770 -3.4 -3.3 uroporphyrinogen-III C-methyltransferase compare
SGL_RS17330 -3.4 -9.6 biosynthetic arginine decarboxylase compare
SGL_RS13495 -3.3 -8.1 AarF/ABC1/UbiB kinase family protein compare
SGL_RS12030 -3.3 -3.2 extracellular solute-binding protein compare
SGL_RS07200 -3.3 -2.3 LCP family protein compare
SGL_RS07840 -3.3 -2.2 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS04820 -3.3 -2.2 LysR family transcriptional regulator compare
SGL_RS11955 -3.3 -2.3 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS16880 -3.2 -3.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS11510 -3.2 -3.0 dihydroneopterin aldolase compare
SGL_RS09110 -3.2 -4.7 squalene--hopene cyclase compare
SGL_RS14190 -3.1 -8.0 phosphate ABC transporter permease PstA compare
SGL_RS13870 -3.1 -3.6 rRNA maturation RNase YbeY compare
SGL_RS03365 -3.1 -3.6 Ycf66 family protein compare
SGL_RS05440 -3.0 -2.1 ACP S-malonyltransferase compare
SGL_RS03005 -3.0 -5.2 nucleoside recognition domain-containing protein compare
SGL_RS13535 -3.0 -2.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS06430 -3.0 -2.0 glycosyltransferase family 2 protein compare
SGL_RS09845 -2.9 -5.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS14195 -2.9 -4.9 phosphate ABC transporter permease subunit PstC compare
SGL_RS10245 -2.9 -7.7 glycoside hydrolase family protein compare
SGL_RS14430 -2.9 -3.4 cobalt ECF transporter T component CbiQ compare
SGL_RS14435 -2.9 -1.9 cobalt transporter CbiM compare
SGL_RS15710 -2.9 -18.6 HD family phosphohydrolase compare
SGL_RS04775 -2.8 -5.5 alpha/beta hydrolase compare
SGL_RS03970 -2.8 -1.9 thiamine phosphate synthase compare
SGL_RS09820 -2.7 -2.2 ribosome maturation factor RimM compare
SGL_RS09905 -2.7 -1.9 biotin/lipoate A/B protein ligase family protein compare
SGL_RS18100 -2.7 -3.8 SH3 domain-containing protein compare
SGL_RS14930 -2.7 -5.9 type I methionyl aminopeptidase compare
SGL_RS16360 -2.7 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS08710 -2.7 -2.6 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS10480 -2.7 -10.1 metallophosphoesterase family protein compare
SGL_RS02145 -2.7 -9.1 metallophosphoesterase compare
SGL_RS15620 -2.7 -2.6 cobyric acid synthase CobQ compare
SGL_RS11000 -2.6 -4.3 sulfate adenylyltransferase compare
SGL_RS17520 -2.6 -3.1 DUF3352 domain-containing protein compare
SGL_RS05980 -2.6 -3.9 hypothetical protein compare
SGL_RS12540 -2.6 -6.7 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS14180 -2.6 -10.1 phosphate ABC transporter ATP-binding protein PstB compare
SGL_RS07170 -2.6 -2.4 glycine cleavage system protein GcvH compare
SGL_RS15130 -2.6 -11.4 dTDP-glucose 4,6-dehydratase compare
SGL_RS15530 -2.5 -2.4 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS10775 -2.5 -4.6 DUF3326 domain-containing protein compare
SGL_RS15045 -2.5 -6.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS15840 -2.5 -12.4 class A beta-lactamase compare
SGL_RS03790 -2.5 -2.9 GTPase ObgE compare
SGL_RS18320 -2.5 -10.1 serine/threonine-protein kinase compare
SGL_RS17650 -2.4 -2.8 hypothetical protein compare
SGL_RS04360 -2.4 -9.7 5-formyltetrahydrofolate cyclo-ligase compare
SGL_RS05560 -2.4 -3.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS12755 -2.4 -11.1 IMS domain-containing protein compare
SGL_RS16950 -2.4 -7.9 phosphoketolase compare
SGL_RS15425 -2.4 -5.8 cobalamin biosynthesis protein CobW compare
SGL_RS05470 -2.4 -2.8 dihydropteroate synthase compare
SGL_RS14445 -2.4 -2.7 hypothetical protein compare
SGL_RS14540 -2.3 -2.6 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS16940 -2.3 -2.6 dephospho-CoA kinase compare
SGL_RS16100 -2.3 -6.6 heavy metal translocating P-type ATPase compare
SGL_RS05370 -2.3 -2.1 Na+/H+ antiporter subunit E compare
SGL_RS09385 -2.3 -2.1 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS07870 -2.3 -3.0 Ycf51 family protein compare
SGL_RS02665 -2.3 -2.6 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS14185 -2.2 -4.9 phosphate ABC transporter ATP-binding protein PstB compare
SGL_RS09720 -2.2 -2.1 beta-ketoacyl-ACP synthase compare
SGL_RS02375 -2.2 -8.6 DUF3086 domain-containing protein compare
SGL_RS14335 -2.2 -2.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS12560 -2.2 -8.9 ABC transporter permease compare
SGL_RS10155 -2.1 -3.7 hypothetical protein compare
SGL_RS04260 -2.1 -9.6 DUF2993 domain-containing protein compare
SGL_RS03840 -2.1 -2.4 adenylyl-sulfate kinase compare
SGL_RS17685 -2.1 -9.0 ArsB/NhaD family transporter compare
SGL_RS13055 -2.1 -2.0 protein translocase subunit SecF compare
SGL_RS03185 -2.1 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS15535 -2.1 -8.6 EamA family transporter compare
SGL_RS08095 -2.1 -8.6 peptide ABC transporter substrate-binding protein compare
SGL_RS03420 -2.1 -5.4 UbiD family decarboxylase compare
SGL_RS12575 -2.1 -2.4 riboflavin synthase compare
SGL_RS14105 -2.1 -2.4 2-succinylbenzoate--CoA ligase compare
SGL_RS13245 -2.1 -5.9 DUF3747 domain-containing protein compare
SGL_RS03775 -2.1 -4.4 membrane protein compare
SGL_RS18230 -2.1 -3.9 DUF2993 domain-containing protein compare
SGL_RS07570 -2.1 -6.5 ABC transporter permease compare
SGL_RS18300 -2.0 -2.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS03505 -2.0 -12.3 exopolysaccharide transport family protein compare
SGL_RS06440 -2.0 -5.2 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS02795 -2.0 -6.3 flavin prenyltransferase UbiX compare
SGL_RS06485 -2.0 -2.8 anti-sigma factor compare
SGL_RS13855 -2.0 -4.1 hypothetical protein compare
SGL_RS03000 -2.0 -5.4 spore maturation protein compare
SGL_RS13195 -2.0 -4.3 Ig-like domain-containing protein compare
SGL_RS04510 -2.0 -4.0 DUF561 domain-containing protein compare
SGL_RS14320 -2.0 -9.5 site-2 protease family protein compare
SGL_RS16865 -2.0 -3.6 sulfurtransferase TusA family protein compare
SGL_RS10790 -1.9 -4.8 DUF4359 domain-containing protein compare
SGL_RS16690 -1.9 -4.5 adenosine kinase compare
SGL_RS00195 -1.9 -8.8 glycosyltransferase family 2 protein compare
SGL_RS14860 -1.9 -2.8 8-amino-7-oxononanoate synthase compare
SGL_RS15845 -1.9 -7.9 polyphosphate kinase 1 compare
SGL_RS08175 -1.9 -2.7 serine hydrolase compare
SGL_RS05260 -1.9 -5.5 hypothetical protein compare
SGL_RS12335 -1.9 -4.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS17735 -1.9 -7.8 hypothetical protein compare
SGL_RS01565 -1.9 -15.3 CusA/CzcA family heavy metal efflux RND transporter compare
SGL_RS06920 -1.8 -8.5 serine/threonine protein kinase compare
SGL_RS03870 -1.8 -9.6 histidinol dehydrogenase compare
SGL_RS02305 -1.8 -7.9 NAD-dependent malic enzyme compare
SGL_RS05320 -1.8 -8.1 PBP1A family penicillin-binding protein compare
SGL_RS08160 -1.8 -5.1 hypothetical protein compare
SGL_RS10305 -1.8 -4.2 PIN/TRAM domain-containing protein compare
SGL_RS16860 -1.8 -6.6 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS10585 -1.8 -9.3 MFS transporter compare
SGL_RS08275 -1.8 -1.7 tetratricopeptide repeat protein compare
SGL_RS15200 -1.8 -1.9 hypothetical protein compare
SGL_RS04155 -1.8 -3.0 reverse transcriptase domain-containing protein compare
SGL_RS07580 -1.8 -6.0 exopolysaccharide biosynthesis protein compare
SGL_RS15435 -1.8 -7.6 PD40 domain-containing protein compare
SGL_RS02655 -1.8 -6.9 S41 family peptidase compare
SGL_RS13370 -1.8 -2.8 exonuclease SbcCD subunit D compare
SGL_RS13175 -1.8 -6.2 GerMN domain-containing protein compare
SGL_RS02840 -1.7 -2.3 MBL fold metallo-hydrolase compare
SGL_RS12400 -1.7 -2.3 lysophospholipid acyltransferase family protein compare
SGL_RS01560 -1.7 -12.0 efflux RND transporter periplasmic adaptor subunit compare
SGL_RS05210 -1.7 -5.4 SLBB domain-containing protein compare
SGL_RS17470 -1.6 -2.8 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS08155 -1.6 -2.0 Spy/CpxP family protein refolding chaperone compare
SGL_RS01200 -1.6 -4.9 ParA family protein compare
SGL_RS07545 -1.6 -4.8 serine/threonine-protein phosphatase compare
SGL_RS11135 -1.6 -1.8 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS03675 -1.6 -2.0 hypothetical protein compare
SGL_RS03640 -1.6 -6.0 UDP-glucose 4-epimerase GalE compare
SGL_RS05330 -1.6 -11.2 ABC transporter ATP-binding protein compare
SGL_RS11395 -1.6 -6.3 TlyA family RNA methyltransferase compare
SGL_RS02580 -1.6 -2.0 DUF1818 family protein compare
SGL_RS04390 -1.6 -3.5 DUF433 domain-containing protein compare
SGL_RS17110 -1.6 -5.2 hypothetical protein compare
SGL_RS03425 -1.6 -1.5 precorrin-3B C(17)-methyltransferase compare
SGL_RS03190 -1.6 -2.4 universal stress protein compare
SGL_RS14695 -1.6 -2.8 DUF2839 domain-containing protein compare
SGL_RS15630 -1.5 -6.4 2Fe-2S iron-sulfur cluster-binding protein compare
SGL_RS08115 -1.5 -3.4 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS18365 -1.5 -6.4 glycosyltransferase family 9 protein compare
SGL_RS11885 -1.5 -4.5 fatty acid desaturase compare
SGL_RS02470 -1.5 -4.0 transcription termination factor NusA compare
SGL_RS16545 -1.5 -7.7 LdpA C-terminal domain-containing domain compare
SGL_RS02335 -1.5 -9.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
SGL_RS11760 -1.5 -6.5 radical SAM protein compare
SGL_RS02280 -1.5 -5.7 Rne/Rng family ribonuclease compare
SGL_RS00220 -1.5 -11.6 oligosaccharide flippase family protein compare
SGL_RS12910 -1.5 -4.8 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
SGL_RS15370 -1.5 -4.6 DnaJ C-terminal domain-containing protein compare
SGL_RS14045 -1.4 -4.4 hypothetical protein compare
SGL_RS11035 -1.4 -2.5 LapA family protein compare
SGL_RS04230 -1.4 -2.4 exonuclease subunit SbcC compare
SGL_RS07285 -1.4 -6.8 N-acetylmuramoyl-L-alanine amidase compare
SGL_RS13560 -1.4 -8.6 glucose-1-phosphate thymidylyltransferase compare
SGL_RS03090 -1.4 -8.9 ArsA family ATPase compare
SGL_RS13335 -1.4 -4.8 hypothetical protein compare
SGL_RS03635 -1.4 -4.1 glycosyltransferase family 4 protein compare
SGL_RS07600 -1.4 -5.8 fumarylacetoacetate hydrolase family protein compare
SGL_RS12545 -1.4 -1.7 GTPase Era compare
SGL_RS12000 -1.4 -8.1 type II CAAX endopeptidase family protein compare
SGL_RS11305 -1.3 -3.4 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS09420 -1.3 -1.4 DUF86 domain-containing protein compare
SGL_RS07605 -1.3 -2.4 HEAT repeat domain-containing protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in metal stress experiments

For metal stress Copper (II) sulfate pentahydrate across organisms