Experiment set1S141 for Synechocystis sp000284455 PCC 6803

Compare to:

NaNO2 10 mM as N source, buffered with 20 mM TES pH8

200 most important genes:

  gene name fitness t score description  
SGL_RS12275 -3.5 -3.4 hypothetical protein compare
SGL_RS02070 -3.5 -2.6 photosystem II reaction center protein Psb28 compare
SGL_RS20180 -3.1 -1.6 membrane protein compare
SGL_RS03570 -2.6 -1.7 Uma2 family endonuclease compare
SGL_RS17330 -2.5 -4.2 biosynthetic arginine decarboxylase compare
SGL_RS03870 -2.5 -7.8 histidinol dehydrogenase compare
SGL_RS19605 -2.4 -3.2 hypothetical protein compare
SGL_RS15875 -2.3 -5.3 FHA domain-containing protein compare
SGL_RS02795 -2.2 -3.9 flavin prenyltransferase UbiX compare
SGL_RS09800 -2.2 -8.3 FAD-binding oxidoreductase compare
SGL_RS02845 -2.2 -1.5 thylakoid membrane protein compare
SGL_RS03755 -2.1 -9.7 FAD-binding oxidoreductase compare
SGL_RS15200 -2.0 -1.4 hypothetical protein compare
SGL_RS08790 -1.9 -1.3 carbohydrate ABC transporter permease compare
SGL_RS03760 -1.9 -3.3 hypothetical protein compare
SGL_RS12925 -1.8 -1.8 AAA family ATPase compare
SGL_RS14245 -1.8 -7.6 TMEM165/GDT1 family protein compare
SGL_RS08520 -1.8 -3.6 metalloregulator ArsR/SmtB family transcription factor compare
SGL_RS03775 -1.7 -2.6 membrane protein compare
SGL_RS03085 -1.7 -3.6 DUF2862 domain-containing protein compare
SGL_RS06770 -1.7 -9.2 cytosine deaminase compare
SGL_RS13795 -1.7 -1.2 phosphohistidine phosphatase SixA compare
SGL_RS04430 -1.6 -8.4 CocE/NonD family hydrolase compare
SGL_RS09890 -1.6 -3.0 DUF3007 family protein compare
SGL_RS11240 -1.6 -1.4 photosystem I reaction center subunit IV compare
SGL_RS14080 -1.6 -9.9 DICT sensory domain-containing protein compare
SGL_RS12065 -1.5 -8.1 DMT family transporter compare
SGL_RS03460 -1.5 -6.4 hypothetical protein compare
SGL_RS03420 -1.5 -3.1 UbiD family decarboxylase compare
SGL_RS17445 -1.5 -2.5 iron-sulfur cluster assembly accessory protein compare
SGL_RS06675 -1.5 -2.6 ABC transporter ATP-binding protein compare
SGL_RS05655 -1.5 -2.0 TPM domain-containing protein compare
SGL_RS15605 -1.5 -1.7 hypothetical protein compare
SGL_RS19130 -1.5 -1.5 IS630 family transposase compare
SGL_RS12095 -1.4 -2.0 YoaK family protein compare
SGL_RS03365 -1.4 -2.1 Ycf66 family protein compare
SGL_RS14695 -1.4 -3.1 DUF2839 domain-containing protein compare
SGL_RS12870 -1.4 -2.0 YqeG family HAD IIIA-type phosphatase compare
SGL_RS16880 -1.4 -1.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS04410 -1.3 -4.2 photosystem II protein PsbQ compare
SGL_RS07560 -1.3 -3.4 thylakoid lumen protein compare
SGL_RS05880 -1.2 -1.8 sugar ABC transporter substrate-binding protein compare
SGL_RS12475 -1.2 -7.2 cation-translocating P-type ATPase compare
SGL_RS02660 -1.2 -3.6 L-threonylcarbamoyladenylate synthase compare
SGL_RS06755 -1.2 -3.9 bacterioferritin-associated ferredoxin compare
SGL_RS17650 -1.2 -0.8 hypothetical protein compare
SGL_RS04825 -1.1 -1.8 hypothetical protein compare
SGL_RS03450 -1.1 -2.1 permease compare
SGL_RS12625 -1.1 -2.3 NAD(P)H-quinone oxidoreductase subunit 4 compare
SGL_RS06340 -1.1 -4.7 response regulator transcription factor compare
SGL_RS06275 -1.1 -1.2 hypothetical protein compare
SGL_RS02375 -1.1 -3.7 DUF3086 domain-containing protein compare
SGL_RS13495 -1.1 -4.5 AarF/ABC1/UbiB kinase family protein compare
SGL_RS02510 -1.0 -4.0 BlaI/MecI/CopY family transcriptional regulator compare
SGL_RS04960 -1.0 -1.8 VOC family protein compare
SGL_RS04745 -1.0 -2.2 STAS domain-containing protein compare
SGL_RS13455 -1.0 -3.5 RDD family protein compare
SGL_RS05370 -1.0 -1.3 Na+/H+ antiporter subunit E compare
SGL_RS18765 -1.0 -1.7 chlorophyll A-B-binding protein compare
SGL_RS11495 -1.0 -2.6 Ig-like domain-containing protein compare
SGL_RS19525 -1.0 -2.0 hypothetical protein compare
SGL_RS10545 -1.0 -1.7 hypothetical protein compare
SGL_RS13910 -1.0 -2.0 phasin family protein compare
SGL_RS10320 -1.0 -0.7 ribosome biogenesis GTPase Der compare
SGL_RS08650 -1.0 -3.5 S-layer homology domain-containing protein compare
SGL_RS03265 -0.9 -1.0 photosystem II complex extrinsic protein PsbU compare
SGL_RS13670 -0.9 -1.6 thioredoxin compare
SGL_RS04320 -0.9 -3.0 hypothetical protein compare
SGL_RS06455 -0.9 -4.9 guanitoxin biosynthesis MATE family efflux transporter GntT compare
SGL_RS14455 -0.9 -2.3 hypothetical protein compare
SGL_RS09975 -0.9 -3.2 DUF29 domain-containing protein compare
SGL_RS15505 -0.9 -3.8 pentapeptide repeat-containing protein compare
SGL_RS14300 -0.9 -5.8 HAMP domain-containing sensor histidine kinase compare
SGL_RS03065 -0.9 -2.5 heat-inducible transcriptional repressor HrcA compare
SGL_RS00065 -0.9 -1.6 LAGLIDADG endonuclease compare
SGL_RS15425 -0.9 -2.3 cobalamin biosynthesis protein CobW compare
SGL_RS04650 -0.9 -5.5 tetratricopeptide repeat protein compare
SGL_RS02540 -0.9 -2.2 universal stress protein compare
SGL_RS15485 -0.9 -3.1 biopolymer transporter ExbD compare
SGL_RS12515 -0.9 -1.1 hypothetical protein compare
SGL_RS18365 -0.9 -4.0 glycosyltransferase family 9 protein compare
SGL_RS09795 -0.9 -3.9 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
SGL_RS15570 -0.9 -3.8 AI-2E family transporter compare
SGL_RS12920 -0.9 -0.8 hypothetical protein compare
SGL_RS09350 -0.9 -1.4 photosystem II biogenesis protein Psp29 compare
SGL_RS14435 -0.9 -0.7 cobalt transporter CbiM compare
SGL_RS08355 -0.9 -1.6 hypothetical protein compare
SGL_RS06640 -0.9 -0.8 DUF4168 domain-containing protein compare
SGL_RS00540 -0.8 -1.5 hypothetical protein compare
SGL_RS19620 -0.8 -1.3 hypothetical protein compare
SGL_RS00830 -0.8 -1.5 hypothetical protein compare
SGL_RS15245 -0.8 -3.4 iron-sulfur cluster biosynthesis transcriptional regulator SufR compare
SGL_RS17100 -0.8 -4.0 SWIM zinc finger family protein compare
SGL_RS11645 -0.8 -2.1 photosystem II protein Psb27 compare
SGL_RS12910 -0.8 -2.9 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
SGL_RS11000 -0.8 -1.4 sulfate adenylyltransferase compare
SGL_RS14585 -0.8 -1.2 TolB family protein compare
SGL_RS07050 -0.8 -4.2 polyphosphate:AMP phosphotransferase compare
SGL_RS18095 -0.8 -2.4 TIGR03943 family protein compare
SGL_RS12340 -0.8 -4.0 hypothetical protein compare
SGL_RS11210 -0.8 -3.2 2Fe-2S iron-sulfur cluster-binding protein compare
SGL_RS04025 -0.8 -2.4 proton extrusion protein PcxA compare
SGL_RS09970 -0.8 -1.8 DUF29 domain-containing protein compare
SGL_RS02460 -0.8 -1.6 phosphate signaling complex protein PhoU compare
SGL_RS06245 -0.8 -2.0 late competence development ComFB family protein compare
SGL_RS02665 -0.8 -0.5 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS02785 -0.8 -2.9 CRR6 family NdhI maturation factor compare
SGL_RS04930 -0.8 -1.8 hypothetical protein compare
SGL_RS00120 -0.8 -1.2 DUF433 domain-containing protein compare
SGL_RS19450 -0.8 -1.6 hypothetical protein compare
SGL_RS10990 -0.8 -3.2 hypothetical protein compare
SGL_RS07535 -0.8 -3.8 LysR family transcriptional regulator compare
SGL_RS05560 -0.8 -0.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS07855 -0.8 -4.8 MASE1 domain-containing protein compare
SGL_RS03060 -0.8 -1.7 phosphoadenosine phosphosulfate reductase compare
SGL_RS12820 -0.8 -3.6 1,4-alpha-glucan branching enzyme compare
SGL_RS11900 -0.8 -2.5 radical SAM protein compare
SGL_RS15490 -0.7 -3.3 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS09185 -0.7 -1.9 group 1 truncated hemoglobin compare
SGL_RS08260 -0.7 -2.2 L-histidine N(alpha)-methyltransferase compare
SGL_RS12900 -0.7 -3.6 NAD-dependent succinate-semialdehyde dehydrogenase compare
SGL_RS08145 -0.7 -1.3 ribosomal protein S18-alanine N-acetyltransferase compare
SGL_RS11525 -0.7 -1.4 DUF2237 family protein compare
SGL_RS11930 -0.7 -0.9 DUF29 domain-containing protein compare
SGL_RS19775 -0.7 -3.9 TerB family tellurite resistance protein compare
SGL_RS05855 -0.7 -1.7 Dps family protein compare
SGL_RS14865 -0.7 -0.9 type I methionyl aminopeptidase compare
SGL_RS18710 -0.7 -0.6 DUF3155 domain-containing protein compare
SGL_RS06020 -0.7 -1.5 sugar ABC transporter permease compare
SGL_RS03090 -0.7 -3.5 ArsA family ATPase compare
SGL_RS13855 -0.7 -1.8 hypothetical protein compare
SGL_RS19310 -0.7 -2.4 hypothetical protein compare
SGL_RS10835 -0.7 -1.2 segregation/condensation protein A compare
SGL_RS18030 -0.7 -2.3 SRPBCC family protein compare
SGL_RS20080 -0.7 -0.9 DUF4335 domain-containing protein compare
SGL_RS11350 -0.7 -1.5 SGNH/GDSL hydrolase family protein compare
SGL_RS17520 -0.7 -0.9 DUF3352 domain-containing protein compare
SGL_RS04280 -0.7 -2.9 ATP-dependent endonuclease compare
SGL_RS03820 -0.7 -4.0 universal stress protein compare
SGL_RS03490 -0.7 -2.5 YaaW family protein compare
SGL_RS16705 -0.7 -1.6 diadenylate cyclase CdaA compare
SGL_RS12695 -0.7 -1.1 tetratricopeptide repeat protein compare
SGL_RS07700 -0.7 -2.0 ribosome silencing factor compare
SGL_RS10955 -0.7 -0.9 hypothetical protein compare
SGL_RS11970 -0.7 -0.7 HNH endonuclease compare
SGL_RS05355 -0.7 -4.2 cation:proton antiporter compare
SGL_RS03840 -0.7 -1.0 adenylyl-sulfate kinase compare
SGL_RS01075 -0.7 -1.2 AAA family ATPase compare
SGL_RS16915 -0.6 -1.1 trigger factor compare
SGL_RS15725 -0.6 -2.1 ParA family protein compare
SGL_RS10455 -0.6 -1.8 hypothetical protein compare
SGL_RS07995 -0.6 -2.9 RIP metalloprotease RseP compare
SGL_RS07735 -0.6 -2.9 DUF1997 domain-containing protein compare
SGL_RS03790 -0.6 -0.6 GTPase ObgE compare
SGL_RS14430 -0.6 -1.2 cobalt ECF transporter T component CbiQ compare
SGL_RS05385 -0.6 -2.2 DUF4040 domain-containing protein compare
SGL_RS06795 -0.6 -1.0 glutaredoxin 3 compare
SGL_RS15305 -0.6 -1.7 ribonuclease HI compare
SGL_RS19755 -0.6 -2.3 hypothetical protein compare
SGL_RS02960 -0.6 -3.5 alanine dehydrogenase compare
SGL_RS12535 -0.6 -2.1 radical SAM protein compare
SGL_RS13170 -0.6 -1.7 histidine kinase compare
SGL_RS13435 -0.6 -1.1 MgtC/SapB family protein compare
SGL_RS00880 -0.6 -1.3 Rho termination factor N-terminal domain-containing protein compare
SGL_RS09505 -0.6 -1.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS06725 -0.6 -1.9 hypothetical protein compare
SGL_RS03700 -0.6 -0.9 type II toxin-antitoxin system HicA family toxin compare
SGL_RS07175 -0.6 -3.8 NFACT family protein compare
SGL_RS14425 -0.6 -0.8 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS13900 -0.6 -3.4 AI-2E family transporter compare
SGL_RS05295 -0.6 -1.7 heavy-metal-associated domain-containing protein compare
SGL_RS02150 -0.6 -2.5 WecB/TagA/CpsF family glycosyltransferase compare
SGL_RS17590 -0.6 -1.1 PAS domain S-box protein compare
SGL_RS02850 -0.6 -1.8 uracil phosphoribosyltransferase compare
SGL_RS18330 -0.6 -2.8 hypothetical protein compare
SGL_RS01040 -0.6 -1.2 peptidase compare
SGL_RS00655 -0.6 -0.9 YlcI/YnfO family protein compare
SGL_RS09150 -0.6 -2.4 acetolactate synthase large subunit compare
SGL_RS00320 -0.6 -2.6 helix-turn-helix transcriptional regulator compare
SGL_RS20155 -0.6 -1.4 hypothetical protein compare
SGL_RS19400 -0.6 -1.1 hypothetical protein compare
SGL_RS06270 -0.6 -0.9 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
SGL_RS13535 -0.6 -0.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS15500 -0.6 -3.9 hypothetical protein compare
SGL_RS11675 -0.6 -1.0 chromophore lyase CpcT/CpeT compare
SGL_RS13680 -0.6 -3.0 chaperonin GroEL compare
SGL_RS16100 -0.6 -1.9 heavy metal translocating P-type ATPase compare
SGL_RS03565 -0.5 -1.8 DUF29 domain-containing protein compare
SGL_RS18380 -0.5 -2.0 GTP-binding protein compare
SGL_RS07585 -0.5 -1.5 ATP-dependent Clp protease adapter ClpS compare
SGL_RS08350 -0.5 -1.1 peroxiredoxin-like family protein compare
SGL_RS00295 -0.5 -2.6 hypothetical protein compare
SGL_RS11300 -0.5 -1.4 NfeD family protein compare
SGL_RS03895 -0.5 -2.3 MBL fold metallo-hydrolase compare
SGL_RS02520 -0.5 -1.2 thioredoxin-dependent thiol peroxidase compare
SGL_RS01205 -0.5 -1.7 ParB/RepB/Spo0J family partition protein compare
SGL_RS10060 -0.5 -1.6 hemolysin family protein compare
SGL_RS12610 -0.5 -0.9 Uma2 family endonuclease compare
SGL_RS14685 -0.5 -1.8 hypothetical protein compare
SGL_RS13005 -0.5 -3.3 cysteine desulfurase family protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Sodium nitrite in Synechocystis sp000284455 PCC 6803

For nitrogen source Sodium nitrite across organisms