Experiment set1S136 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media supplemented with 3 .M Cl2Co but diluted to prevent light attenuation

200 most detrimental genes:

  gene name fitness t score description  
SGL_RS06635 +1.2 2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
SGL_RS00315 +1.0 1.4 hypothetical protein compare
SGL_RS12600 +0.9 2.0 DUF2062 domain-containing protein compare
SGL_RS05035 +0.7 1.3 hypothetical protein compare
SGL_RS02195 +0.7 0.9 nucleoside monophosphate kinase compare
SGL_RS05205 +0.7 3.1 DEAD/DEAH box helicase compare
SGL_RS10360 +0.7 1.6 hypothetical protein compare
SGL_RS03610 +0.6 1.5 hypothetical protein compare
SGL_RS01190 +0.6 1.4 DUF2281 domain-containing protein compare
SGL_RS11920 +0.6 1.3 KH domain-containing protein compare
SGL_RS15385 +0.6 2.0 potassium channel family protein compare
SGL_RS19875 +0.6 1.2 IS1 family transposase compare
SGL_RS02325 +0.6 1.4 McrB family protein compare
SGL_RS18370 +0.6 1.5 cyclic nucleotide-binding domain-containing protein compare
SGL_RS06820 +0.6 1.2 hypothetical protein compare
SGL_RS05490 +0.6 1.7 hypothetical protein compare
SGL_RS17235 +0.5 2.4 hypothetical protein compare
SGL_RS17860 +0.5 1.5 Holliday junction resolvase RuvX compare
SGL_RS03705 +0.5 2.4 UDP-glucose 4-epimerase compare
SGL_RS19370 +0.5 1.7 hypothetical protein compare
SGL_RS00595 +0.5 1.0 hypothetical protein compare
SGL_RS09990 +0.5 1.1 NAD(P)H-quinone oxidoreductase subunit N compare
SGL_RS11555 +0.5 2.1 hypothetical protein compare
SGL_RS02370 +0.5 1.3 DUF3119 family protein compare
SGL_RS00775 +0.5 2.0 DUF5615 family PIN-like protein compare
SGL_RS08675 +0.5 1.0 hypothetical protein compare
SGL_RS20125 +0.5 1.2 hypothetical protein compare
SGL_RS04635 +0.5 1.9 hypothetical protein compare
SGL_RS13690 +0.4 1.2 pentapeptide repeat-containing protein compare
SGL_RS00560 +0.4 0.9 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS03195 +0.4 2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
SGL_RS02140 +0.4 2.1 class I SAM-dependent methyltransferase compare
SGL_RS14975 +0.4 1.3 translation initiation factor compare
SGL_RS12315 +0.4 1.3 hypothetical protein compare
SGL_RS14360 +0.4 2.0 carbon-nitrogen hydrolase family protein compare
SGL_RS12865 +0.4 3.1 pseudouridine synthase compare
SGL_RS01260 +0.4 1.1 putative toxin-antitoxin system toxin component, PIN family compare
SGL_RS00270 +0.4 1.7 response regulator compare
SGL_RS10880 +0.4 2.7 hydrogenase nickel incorporation protein HypB compare
SGL_RS10685 +0.4 3.2 type IV pilus assembly protein PilM compare
SGL_RS13670 +0.4 1.4 thioredoxin compare
SGL_RS07080 +0.4 0.6 hypothetical protein compare
SGL_RS02495 +0.4 0.9 hypothetical protein compare
SGL_RS13545 +0.4 0.9 hypothetical protein compare
SGL_RS19610 +0.4 1.5 hypothetical protein compare
SGL_RS08085 +0.4 1.1 DUF1499 domain-containing protein compare
SGL_RS18955 +0.4 1.0 IS5 family transposase compare
SGL_RS07740 +0.4 1.6 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS05545 +0.4 2.4 cytochrome c oxidase subunit I compare
SGL_RS07920 +0.4 0.9 DUF29 domain-containing protein compare
SGL_RS05215 +0.4 1.0 TIGR02450 family Trp-rich protein compare
SGL_RS08555 +0.4 0.7 DUF2442 domain-containing protein compare
SGL_RS09620 +0.4 1.0 hypothetical protein compare
SGL_RS00865 +0.4 2.3 hypothetical protein compare
SGL_RS15060 +0.4 2.5 PstS family phosphate ABC transporter substrate-binding protein compare
SGL_RS14005 +0.4 0.8 abortive infection system antitoxin AbiGi family protein compare
SGL_RS00565 +0.4 1.2 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS04725 +0.4 1.6 response regulator transcription factor compare
SGL_RS19635 +0.4 0.9 hypothetical protein compare
SGL_RS00450 +0.4 0.9 recombinase family protein compare
SGL_RS06270 +0.4 1.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
SGL_RS06255 +0.4 2.0 Tic20 family protein compare
SGL_RS09565 +0.4 0.7 DUF115 domain-containing protein compare
SGL_RS10375 +0.3 0.9 EI24 domain-containing protein compare
SGL_RS13220 +0.3 2.3 ribonuclease III compare
SGL_RS13575 +0.3 0.7 DUF2281 domain-containing protein compare
SGL_RS08825 +0.3 1.0 IS5 family transposase compare
SGL_RS14590 +0.3 0.9 hypothetical protein compare
SGL_RS02165 +0.3 1.0 hypothetical protein compare
SGL_RS01825 +0.3 0.8 type II toxin-antitoxin system HigB family toxin compare
SGL_RS04810 +0.3 0.7 AarF/ABC1/UbiB kinase family protein compare
SGL_RS05890 +0.3 1.4 urease accessory protein UreF compare
SGL_RS17580 +0.3 1.6 ATP-binding protein compare
SGL_RS05415 +0.3 1.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
SGL_RS10900 +0.3 0.7 hypothetical protein compare
SGL_RS13215 +0.3 1.1 SxtJ family membrane protein compare
SGL_RS16280 +0.3 1.0 L,D-transpeptidase compare
SGL_RS05485 +0.3 1.3 putative toxin-antitoxin system toxin component, PIN family compare
SGL_RS01035 +0.3 1.8 type III-B CRISPR module RAMP protein Cmr4 compare
SGL_RS02350 +0.3 1.0 type II toxin-antitoxin system YhaV family toxin compare
SGL_RS19730 +0.3 1.4 DNA cytosine methyltransferase compare
SGL_RS00805 +0.3 1.9 type II toxin-antitoxin system RelE/ParE family toxin compare
SGL_RS07385 +0.3 1.1 alpha/beta hydrolase compare
SGL_RS01630 +0.3 2.0 ImmA/IrrE family metallo-endopeptidase compare
SGL_RS04730 +0.3 2.1 N-acetylmuramoyl-L-alanine amidase compare
SGL_RS01355 +0.3 1.6 SprT family zinc-dependent metalloprotease compare
SGL_RS20120 +0.3 1.0 hypothetical protein compare
SGL_RS17070 +0.3 0.8 DUF3146 family protein compare
SGL_RS05290 +0.3 1.7 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS10695 +0.3 2.3 pilus assembly protein compare
SGL_RS12430 +0.3 2.3 circadian clock protein KaiC compare
SGL_RS18030 +0.3 1.6 SRPBCC family protein compare
SGL_RS09485 +0.3 1.0 sugar phosphate isomerase/epimerase compare
SGL_RS11900 +0.3 1.4 radical SAM protein compare
SGL_RS11165 +0.3 1.2 hypothetical protein compare
SGL_RS15415 +0.3 0.8 response regulator compare
SGL_RS13350 +0.3 1.8 hypothetical protein compare
SGL_RS10710 +0.3 1.8 FkbM family methyltransferase compare
SGL_RS03270 +0.3 1.7 HNH endonuclease compare
SGL_RS14330 +0.3 2.3 tRNA dihydrouridine synthase DusB compare
SGL_RS04565 +0.3 1.6 hypothetical protein compare
SGL_RS06500 +0.3 1.4 glycosyltransferase family 4 protein compare
SGL_RS18025 +0.3 1.2 hypothetical protein compare
SGL_RS03700 +0.3 0.7 type II toxin-antitoxin system HicA family toxin compare
SGL_RS08330 +0.3 1.0 cupin domain-containing protein compare
SGL_RS20190 +0.3 1.0 hypothetical protein compare
SGL_RS18340 +0.3 1.1 hypothetical protein compare
SGL_RS00350 +0.3 0.8 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS05270 +0.3 2.1 serine/threonine-protein kinase compare
SGL_RS01960 +0.3 1.2 MFS transporter compare
SGL_RS01195 +0.3 0.9 PIN domain-containing protein compare
SGL_RS09125 +0.3 0.8 IS701 family transposase compare
SGL_RS17970 +0.3 1.5 hypothetical protein compare
SGL_RS13140 +0.3 1.4 peroxiredoxin compare
SGL_RS11855 +0.3 0.9 YtxH domain-containing protein compare
SGL_RS05995 +0.3 0.8 DUF2442 domain-containing protein compare
SGL_RS13780 +0.3 1.7 WD40 repeat domain-containing protein compare
SGL_RS15750 +0.3 2.2 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
SGL_RS01820 +0.3 1.8 Fic family protein compare
SGL_RS09855 +0.3 0.7 slipin family protein compare
SGL_RS18045 +0.3 1.4 hypothetical protein compare
SGL_RS12530 +0.3 1.6 DUF1830 domain-containing protein compare
SGL_RS10325 +0.3 1.9 hypothetical protein compare
SGL_RS05220 +0.3 1.1 DUF1995 family protein compare
SGL_RS01160 +0.3 0.7 DUF5615 family PIN-like protein compare
SGL_RS18770 +0.3 0.5 photosystem II reaction center protein PsbN compare
SGL_RS00725 +0.3 0.9 hypothetical protein compare
SGL_RS06470 +0.3 1.0 chlorophyll a/b-binding protein compare
SGL_RS05635 +0.3 0.9 DUF4269 domain-containing protein compare
SGL_RS08285 +0.3 1.3 hypothetical protein compare
SGL_RS19765 +0.3 0.9 BrnT family toxin compare
SGL_RS16140 +0.3 1.0 GNAT family N-acetyltransferase compare
SGL_RS15420 +0.3 1.2 DevA family ABC transporter ATP-binding protein compare
SGL_RS12550 +0.3 2.2 hybrid sensor histidine kinase/response regulator compare
SGL_RS11065 +0.3 1.0 hypothetical protein compare
SGL_RS04125 +0.3 1.0 type II toxin-antitoxin system VapC family toxin compare
SGL_RS19425 +0.3 1.0 hypothetical protein compare
SGL_RS04300 +0.3 1.3 PAS domain S-box protein compare
SGL_RS05090 +0.3 1.3 response regulator compare
SGL_RS13950 +0.3 1.9 GspE/PulE family protein compare
SGL_RS16060 +0.2 1.3 efflux RND transporter periplasmic adaptor subunit compare
SGL_RS13655 +0.2 1.0 DNA-3-methyladenine glycosylase compare
SGL_RS10815 +0.2 0.5 hypothetical protein compare
SGL_RS17040 +0.2 1.9 M1 family metallopeptidase compare
SGL_RS09165 +0.2 1.3 hypothetical protein compare
SGL_RS14420 +0.2 1.5 TIGR04168 family protein compare
SGL_RS07225 +0.2 0.6 Uma2 family endonuclease compare
SGL_RS14555 +0.2 0.9 YraN family protein compare
SGL_RS13230 +0.2 1.7 FAD-dependent oxidoreductase compare
SGL_RS05195 +0.2 1.2 ferredoxin compare
SGL_RS01555 +0.2 1.4 two-component system sensor histidine kinase RppB compare
SGL_RS18475 +0.2 1.2 metalloregulator ArsR/SmtB family transcription factor compare
SGL_RS19755 +0.2 1.3 hypothetical protein compare
SGL_RS08480 +0.2 1.1 DUF3122 domain-containing protein compare
SGL_RS05115 +0.2 0.6 hypothetical protein compare
SGL_RS00065 +0.2 0.7 LAGLIDADG endonuclease compare
SGL_RS03160 +0.2 1.6 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofH compare
SGL_RS11345 +0.2 1.5 fructose bisphosphate aldolase compare
SGL_RS14675 +0.2 1.5 peptidylprolyl isomerase compare
SGL_RS17160 +0.2 1.7 sulfate/molybdate ABC transporter ATP-binding protein compare
SGL_RS02615 +0.2 1.1 metallophosphoesterase compare
SGL_RS16960 +0.2 1.5 YggS family pyridoxal phosphate-dependent enzyme compare
SGL_RS15660 +0.2 1.0 CGLD27 family protein compare
SGL_RS17440 +0.2 1.8 RNA polymerase sigma factor SigF compare
SGL_RS14970 +0.2 1.0 hypothetical protein compare
SGL_RS02150 +0.2 1.7 WecB/TagA/CpsF family glycosyltransferase compare
SGL_RS18185 +0.2 1.0 DUF1269 domain-containing protein compare
SGL_RS07500 +0.2 0.7 UPF0175 family protein compare
SGL_RS06890 +0.2 1.7 cupin domain-containing protein compare
SGL_RS00345 +0.2 1.0 dihydrofolate reductase family protein compare
SGL_RS05015 +0.2 1.3 cytochrome d ubiquinol oxidase subunit II compare
SGL_RS17115 +0.2 1.3 DUF3370 domain-containing protein compare
SGL_RS02820 +0.2 1.8 EAL domain-containing protein compare
SGL_RS14965 +0.2 1.6 DUF2779 domain-containing protein compare
SGL_RS12375 +0.2 0.6 hypothetical protein compare
SGL_RS00960 +0.2 1.2 hypothetical protein compare
SGL_RS00370 +0.2 1.1 YwqG family protein compare
SGL_RS17950 +0.2 1.1 GNAT family N-acetyltransferase compare
SGL_RS11810 +0.2 1.7 urea ABC transporter substrate-binding protein compare
SGL_RS16965 +0.2 0.6 type II toxin-antitoxin system VapC family toxin compare
SGL_RS02715 +0.2 1.4 HAMP domain-containing sensor histidine kinase compare
SGL_RS05170 +0.2 0.8 hypothetical protein compare
SGL_RS10615 +0.2 1.6 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
SGL_RS17295 +0.2 1.0 toll/interleukin-1 receptor domain-containing protein compare
SGL_RS14395 +0.2 1.5 hypothetical protein compare
SGL_RS14100 +0.2 0.8 gamma-glutamylcyclotransferase compare
SGL_RS08730 +0.2 0.6 Uma2 family endonuclease compare
SGL_RS04355 +0.2 1.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
SGL_RS20145 +0.2 0.3 hypothetical protein compare
SGL_RS19420 +0.2 0.7 hypothetical protein compare
SGL_RS13630 +0.2 0.9 LON peptidase substrate-binding domain-containing protein compare
SGL_RS16025 +0.2 1.0 type II toxin-antitoxin system Phd/YefM family antitoxin compare
SGL_RS00435 +0.2 1.1 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS00280 +0.2 0.5 PAS domain S-box protein compare
SGL_RS13340 +0.2 1.0 GNAT family N-acetyltransferase compare
SGL_RS13075 +0.2 0.8 DNA repair protein RadC compare
SGL_RS17975 +0.2 0.7 hypothetical protein compare
SGL_RS01515 +0.2 2.0 hypothetical protein compare
SGL_RS11075 +0.2 0.8 ABC-2 family transporter protein compare
SGL_RS10180 +0.2 0.6 GUN4 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in metal stress experiments

For metal stress Cobalt chloride hexahydrate across organisms