Experiment set1S130 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media but diluted to prevent light attenuation

200 most important genes:

  gene name fitness t score description  
SGL_RS03625 -7.8 -4.9 glycosyltransferase family 1 protein compare
SGL_RS13555 -7.8 -5.4 aldehyde oxygenase (deformylating) compare
SGL_RS13910 -7.6 -5.2 phasin family protein compare
SGL_RS02955 -7.3 -5.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS10775 -7.2 -5.0 DUF3326 domain-containing protein compare
SGL_RS04510 -7.2 -5.0 DUF561 domain-containing protein compare
SGL_RS03550 -6.9 -10.6 CDP-glucose 4,6-dehydratase compare
SGL_RS03540 -6.2 -4.3 ABC transporter ATP-binding protein compare
SGL_RS17125 -6.2 -4.3 inositol monophosphatase family protein compare
SGL_RS15700 -6.2 -9.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS05375 -6.1 -4.1 hypothetical protein compare
SGL_RS16545 -6.0 -9.1 LdpA C-terminal domain-containing domain compare
SGL_RS03365 -5.9 -4.1 Ycf66 family protein compare
SGL_RS02460 -5.8 -4.0 phosphate signaling complex protein PhoU compare
SGL_RS15655 -5.7 -13.0 asparaginase compare
SGL_RS03560 -5.7 -7.8 class I SAM-dependent methyltransferase compare
SGL_RS06675 -5.7 -3.9 ABC transporter ATP-binding protein compare
SGL_RS17330 -5.6 -3.9 biosynthetic arginine decarboxylase compare
SGL_RS10130 -5.5 -16.6 fatty acid desaturase compare
SGL_RS12870 -5.4 -3.7 YqeG family HAD IIIA-type phosphatase compare
SGL_RS05370 -5.4 -2.6 Na+/H+ antiporter subunit E compare
SGL_RS15425 -5.3 -5.2 cobalamin biosynthesis protein CobW compare
SGL_RS08495 -5.3 -8.9 DUF3370 domain-containing protein compare
SGL_RS02515 -5.3 -5.0 M56 family metallopeptidase compare
SGL_RS05880 -5.3 -3.7 sugar ABC transporter substrate-binding protein compare
SGL_RS03585 -5.3 -9.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS07200 -5.2 -3.6 LCP family protein compare
SGL_RS04490 -5.2 -3.6 2TM domain-containing protein compare
SGL_RS03555 -5.1 -10.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS06020 -5.0 -3.5 sugar ABC transporter permease compare
SGL_RS11510 -5.0 -3.4 dihydroneopterin aldolase compare
SGL_RS02375 -4.9 -8.8 DUF3086 domain-containing protein compare
SGL_RS03775 -4.9 -3.4 membrane protein compare
SGL_RS09820 -4.8 -4.4 ribosome maturation factor RimM compare
SGL_RS02145 -4.8 -9.2 metallophosphoesterase compare
SGL_RS15045 -4.8 -4.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS03590 -4.8 -5.0 ATP-grasp domain-containing protein compare
SGL_RS17495 -4.7 -6.4 peptidoglycan editing factor PgeF compare
SGL_RS03840 -4.7 -3.2 adenylyl-sulfate kinase compare
SGL_RS03520 -4.6 -3.2 ABC transporter permease compare
SGL_RS10305 -4.6 -5.4 PIN/TRAM domain-containing protein compare
SGL_RS18270 -4.5 -5.3 family 10 glycosylhydrolase compare
SGL_RS05390 -4.5 -5.9 Na(+)/H(+) antiporter subunit B compare
SGL_RS17685 -4.5 -10.4 ArsB/NhaD family transporter compare
SGL_RS12490 -4.4 -3.0 glutamate--cysteine ligase compare
SGL_RS13495 -4.4 -11.3 AarF/ABC1/UbiB kinase family protein compare
SGL_RS13510 -4.3 -7.2 transglycosylase domain-containing protein compare
SGL_RS12770 -4.3 -3.0 uroporphyrinogen-III C-methyltransferase compare
SGL_RS05385 -4.3 -8.2 DUF4040 domain-containing protein compare
SGL_RS02580 -4.3 -2.9 DUF1818 family protein compare
SGL_RS08790 -4.3 -2.9 carbohydrate ABC transporter permease compare
SGL_RS06130 -4.3 -3.0 anti-sigma regulatory factor compare
SGL_RS06430 -4.3 -2.9 glycosyltransferase family 2 protein compare
SGL_RS16100 -4.3 -5.8 heavy metal translocating P-type ATPase compare
SGL_RS15435 -4.2 -9.8 PD40 domain-containing protein compare
SGL_RS03545 -4.2 -5.7 glucose-1-phosphate cytidylyltransferase compare
SGL_RS14540 -4.2 -2.8 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS04775 -4.2 -6.3 alpha/beta hydrolase compare
SGL_RS17405 -4.1 -6.8 L-2-hydroxyglutarate oxidase compare
SGL_RS07170 -4.1 -2.8 glycine cleavage system protein GcvH compare
SGL_RS14430 -4.0 -2.8 cobalt ECF transporter T component CbiQ compare
SGL_RS09845 -4.0 -3.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS16860 -4.0 -8.4 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS11305 -3.9 -4.6 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS19585 -3.9 -3.7 hypothetical protein compare
SGL_RS05380 -3.9 -3.8 monovalent cation/H(+) antiporter subunit G compare
SGL_RS06440 -3.9 -5.9 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS13370 -3.9 -3.7 exonuclease SbcCD subunit D compare
SGL_RS16880 -3.8 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS07605 -3.8 -2.6 HEAT repeat domain-containing protein compare
SGL_RS02260 -3.7 -3.5 HEAT repeat domain-containing protein compare
SGL_RS17520 -3.7 -2.5 DUF3352 domain-containing protein compare
SGL_RS08275 -3.7 -2.5 tetratricopeptide repeat protein compare
SGL_RS12745 -3.7 -2.5 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS17650 -3.6 -2.4 hypothetical protein compare
SGL_RS13535 -3.6 -3.4 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS13870 -3.5 -3.4 rRNA maturation RNase YbeY compare
SGL_RS12755 -3.5 -12.4 IMS domain-containing protein compare
SGL_RS04390 -3.5 -3.6 DUF433 domain-containing protein compare
SGL_RS03250 -3.5 -4.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS11000 -3.5 -4.1 sulfate adenylyltransferase compare
SGL_RS05560 -3.5 -2.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS12545 -3.4 -2.3 GTPase Era compare
SGL_RS14425 -3.4 -3.3 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS12575 -3.4 -2.3 riboflavin synthase compare
SGL_RS16940 -3.3 -3.2 dephospho-CoA kinase compare
SGL_RS10320 -3.3 -2.3 ribosome biogenesis GTPase Der compare
SGL_RS14445 -3.3 -2.3 hypothetical protein compare
SGL_RS14585 -3.3 -3.0 TolB family protein compare
SGL_RS17305 -3.3 -2.2 pyrroline-5-carboxylate reductase compare
SGL_RS06800 -3.2 -12.3 glutathione synthase compare
SGL_RS14105 -3.2 -2.2 2-succinylbenzoate--CoA ligase compare
SGL_RS14930 -3.2 -6.8 type I methionyl aminopeptidase compare
SGL_RS03790 -3.2 -2.2 GTPase ObgE compare
SGL_RS14435 -3.2 -2.0 cobalt transporter CbiM compare
SGL_RS09905 -3.2 -3.0 biotin/lipoate A/B protein ligase family protein compare
SGL_RS13465 -3.1 -10.5 class II fumarate hydratase compare
SGL_RS11760 -3.1 -8.0 radical SAM protein compare
SGL_RS18180 -3.1 -5.9 ABC transporter permease compare
SGL_RS06585 -3.1 -2.9 nitrate ABC transporter ATP-binding protein compare
SGL_RS14025 -3.1 -11.6 gamma-glutamyl-phosphate reductase compare
SGL_RS13055 -3.0 -2.0 protein translocase subunit SecF compare
SGL_RS04230 -3.0 -3.5 exonuclease subunit SbcC compare
SGL_RS13900 -3.0 -11.7 AI-2E family transporter compare
SGL_RS13855 -3.0 -5.3 hypothetical protein compare
SGL_RS03425 -3.0 -2.0 precorrin-3B C(17)-methyltransferase compare
SGL_RS14920 -3.0 -3.4 cation:proton antiporter compare
SGL_RS12235 -2.9 -2.0 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS15560 -2.9 -2.0 dethiobiotin synthase compare
SGL_RS18170 -2.9 -2.5 PspA/IM30 family protein compare
SGL_RS12400 -2.9 -2.0 lysophospholipid acyltransferase family protein compare
SGL_RS05980 -2.9 -4.3 hypothetical protein compare
SGL_RS08175 -2.9 -2.0 serine hydrolase compare
SGL_RS11135 -2.8 -2.6 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS05440 -2.8 -1.9 ACP S-malonyltransferase compare
SGL_RS15870 -2.8 -7.3 septum site-determining protein MinC compare
SGL_RS11955 -2.8 -3.8 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS06590 -2.8 -4.5 nitrate ABC transporter permease compare
SGL_RS14905 -2.8 -4.4 30S ribosomal protein PSRP-3 compare
SGL_RS12335 -2.7 -4.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS16360 -2.7 -2.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS12910 -2.7 -7.2 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
SGL_RS03505 -2.7 -13.6 exopolysaccharide transport family protein compare
SGL_RS04525 -2.7 -3.1 photosynthesis system II assembly factor Ycf48 compare
SGL_RS03265 -2.7 -2.1 photosystem II complex extrinsic protein PsbU compare
SGL_RS13905 -2.7 -6.5 hypothetical protein compare
SGL_RS02220 -2.7 -2.5 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS03060 -2.7 -4.6 phosphoadenosine phosphosulfate reductase compare
SGL_RS08710 -2.7 -2.5 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS17470 -2.6 -2.5 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS18215 -2.6 -4.2 pentapeptide repeat-containing protein compare
SGL_RS06600 -2.6 -8.6 anthranilate phosphoribosyltransferase family protein compare
SGL_RS18300 -2.6 -2.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS07180 -2.6 -6.6 carboxynorspermidine decarboxylase compare
SGL_RS12585 -2.6 -3.0 ABC transporter permease subunit compare
SGL_RS16865 -2.6 -4.9 sulfurtransferase TusA family protein compare
SGL_RS00825 -2.6 -5.4 hypothetical protein compare
SGL_RS14045 -2.5 -3.9 hypothetical protein compare
SGL_RS03970 -2.5 -2.4 thiamine phosphate synthase compare
SGL_RS04660 -2.5 -4.1 phycobilisome rod-core linker polypeptide compare
SGL_RS05435 -2.5 -2.4 heavy metal translocating P-type ATPase compare
SGL_RS09720 -2.5 -2.4 beta-ketoacyl-ACP synthase compare
SGL_RS01905 -2.5 -11.4 GDP-mannose 4,6-dehydratase compare
SGL_RS08535 -2.5 -3.3 NIL domain-containing protein compare
SGL_RS05210 -2.5 -6.4 SLBB domain-containing protein compare
SGL_RS16735 -2.4 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS02850 -2.4 -6.1 uracil phosphoribosyltransferase compare
SGL_RS16770 -2.4 -6.2 LptF/LptG family permease compare
SGL_RS01900 -2.4 -5.8 GDP-L-fucose synthase compare
SGL_RS02475 -2.4 -3.4 YlxR family protein compare
SGL_RS09160 -2.4 -2.2 thioredoxin family protein compare
SGL_RS12030 -2.4 -4.1 extracellular solute-binding protein compare
SGL_RS11025 -2.4 -6.7 oxidoreductase compare
SGL_RS03950 -2.4 -8.7 homocysteine biosynthesis protein compare
SGL_RS00830 -2.4 -4.4 hypothetical protein compare
SGL_RS14335 -2.4 -2.2 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS11325 -2.4 -4.1 pitrilysin family protein compare
SGL_RS11835 -2.3 -2.7 transcription antitermination factor NusB compare
SGL_RS11675 -2.3 -4.6 chromophore lyase CpcT/CpeT compare
SGL_RS12540 -2.3 -6.5 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS04720 -2.3 -1.6 iron uptake porin compare
SGL_RS09395 -2.3 -1.5 aldo/keto reductase compare
SGL_RS09305 -2.3 -4.2 adenosyl-hopene transferase HpnH compare
SGL_RS14505 -2.3 -5.7 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS09890 -2.3 -2.9 DUF3007 family protein compare
SGL_RS10480 -2.3 -10.2 metallophosphoesterase family protein compare
SGL_RS15530 -2.2 -2.5 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS11945 -2.2 -9.3 sirohydrochlorin chelatase compare
SGL_RS13685 -2.2 -10.4 ABC transporter ATP-binding protein compare
SGL_RS05465 -2.2 -2.6 hypothetical protein compare
SGL_RS15620 -2.2 -2.5 cobyric acid synthase CobQ compare
SGL_RS09295 -2.2 -14.1 alpha/beta hydrolase compare
SGL_RS02665 -2.2 -2.0 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS16950 -2.1 -8.3 phosphoketolase compare
SGL_RS13195 -2.1 -4.7 Ig-like domain-containing protein compare
SGL_RS03275 -2.1 -10.9 UDP-glucose/GDP-mannose dehydrogenase family protein compare
SGL_RS13550 -2.1 -2.6 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS04735 -2.1 -3.0 hypothetical protein compare
SGL_RS03670 -2.1 -4.0 glycosyltransferase compare
SGL_RS02305 -2.0 -8.7 NAD-dependent malic enzyme compare
SGL_RS08115 -2.0 -4.7 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS06755 -2.0 -5.3 bacterioferritin-associated ferredoxin compare
SGL_RS19475 -1.9 -2.0 hypothetical protein compare
SGL_RS16670 -1.9 -12.5 DUF5942 domain-containing protein compare
SGL_RS12340 -1.9 -10.6 hypothetical protein compare
SGL_RS15845 -1.9 -8.8 polyphosphate kinase 1 compare
SGL_RS06595 -1.9 -4.0 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS07565 -1.9 -3.8 hypothetical protein compare
SGL_RS08605 -1.9 -4.2 DUF3120 domain-containing protein compare
SGL_RS14780 -1.9 -6.7 cyanase compare
SGL_RS09385 -1.9 -2.0 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS03185 -1.9 -2.4 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS04550 -1.8 -5.4 glutamate 5-kinase compare
SGL_RS07840 -1.8 -2.0 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS10155 -1.8 -3.4 hypothetical protein compare
SGL_RS07600 -1.8 -8.4 fumarylacetoacetate hydrolase family protein compare
SGL_RS18320 -1.7 -7.7 serine/threonine-protein kinase compare
SGL_RS03380 -1.7 -5.6 sulfite reductase, ferredoxin dependent compare
SGL_RS03640 -1.7 -7.0 UDP-glucose 4-epimerase GalE compare
SGL_RS11885 -1.7 -4.8 fatty acid desaturase compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in metal stress experiments