Experiment set1S127 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media supplemented with 5mM sodum metaarsenite

200 most important genes:

  gene name fitness t score description  
SGL_RS11355 -7.3 -12.4 arsenite efflux transporter Acr3 compare
SGL_RS05880 -5.4 -3.7 sugar ABC transporter substrate-binding protein compare
SGL_RS07200 -5.3 -3.7 LCP family protein compare
SGL_RS13555 -5.3 -4.4 aldehyde oxygenase (deformylating) compare
SGL_RS06675 -5.2 -5.1 ABC transporter ATP-binding protein compare
SGL_RS03365 -4.8 -4.6 Ycf66 family protein compare
SGL_RS12870 -4.7 -4.5 YqeG family HAD IIIA-type phosphatase compare
SGL_RS03775 -4.6 -4.4 membrane protein compare
SGL_RS01905 -4.5 -11.8 GDP-mannose 4,6-dehydratase compare
SGL_RS06130 -4.4 -3.0 anti-sigma regulatory factor compare
SGL_RS06430 -4.4 -3.0 glycosyltransferase family 2 protein compare
SGL_RS12770 -4.4 -3.0 uroporphyrinogen-III C-methyltransferase compare
SGL_RS13685 -4.3 -10.4 ABC transporter ATP-binding protein compare
SGL_RS14540 -4.2 -2.8 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS12490 -4.1 -4.0 glutamate--cysteine ligase compare
SGL_RS03250 -4.0 -3.8 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS06020 -4.0 -5.4 sugar ABC transporter permease compare
SGL_RS13870 -4.0 -2.7 rRNA maturation RNase YbeY compare
SGL_RS15435 -4.0 -10.7 PD40 domain-containing protein compare
SGL_RS14585 -3.9 -2.5 TolB family protein compare
SGL_RS16880 -3.9 -3.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS03540 -3.9 -7.7 ABC transporter ATP-binding protein compare
SGL_RS01900 -3.8 -7.1 GDP-L-fucose synthase compare
SGL_RS15425 -3.7 -7.0 cobalamin biosynthesis protein CobW compare
SGL_RS17650 -3.6 -2.5 hypothetical protein compare
SGL_RS08790 -3.6 -3.4 carbohydrate ABC transporter permease compare
SGL_RS05560 -3.5 -2.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS04510 -3.5 -6.3 DUF561 domain-containing protein compare
SGL_RS05980 -3.5 -4.0 hypothetical protein compare
SGL_RS16940 -3.4 -3.3 dephospho-CoA kinase compare
SGL_RS11510 -3.4 -4.0 dihydroneopterin aldolase compare
SGL_RS12545 -3.4 -2.3 GTPase Era compare
SGL_RS18180 -3.4 -6.7 ABC transporter permease compare
SGL_RS03625 -3.4 -4.3 glycosyltransferase family 1 protein compare
SGL_RS12030 -3.3 -2.3 extracellular solute-binding protein compare
SGL_RS07935 -3.3 -3.5 hypothetical protein compare
SGL_RS16100 -3.3 -9.3 heavy metal translocating P-type ATPase compare
SGL_RS13855 -3.3 -5.2 hypothetical protein compare
SGL_RS13550 -3.3 -1.8 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS14430 -3.2 -4.4 cobalt ECF transporter T component CbiQ compare
SGL_RS02260 -3.2 -3.6 HEAT repeat domain-containing protein compare
SGL_RS14920 -3.2 -3.7 cation:proton antiporter compare
SGL_RS14435 -3.2 -2.2 cobalt transporter CbiM compare
SGL_RS10130 -3.2 -18.3 fatty acid desaturase compare
SGL_RS08275 -3.1 -2.9 tetratricopeptide repeat protein compare
SGL_RS10305 -3.1 -5.5 PIN/TRAM domain-containing protein compare
SGL_RS13910 -3.1 -6.1 phasin family protein compare
SGL_RS04525 -3.1 -2.9 photosynthesis system II assembly factor Ycf48 compare
SGL_RS11000 -3.0 -5.0 sulfate adenylyltransferase compare
SGL_RS13055 -3.0 -2.0 protein translocase subunit SecF compare
SGL_RS19585 -3.0 -4.1 hypothetical protein compare
SGL_RS03840 -3.0 -3.4 adenylyl-sulfate kinase compare
SGL_RS05385 -2.9 -8.4 DUF4040 domain-containing protein compare
SGL_RS02220 -2.9 -2.7 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS15045 -2.9 -7.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS17520 -2.8 -4.2 DUF3352 domain-containing protein compare
SGL_RS13535 -2.8 -3.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS06595 -2.8 -4.5 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS05435 -2.8 -1.9 heavy metal translocating P-type ATPase compare
SGL_RS14335 -2.8 -1.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS13900 -2.8 -13.4 AI-2E family transporter compare
SGL_RS13510 -2.8 -5.8 transglycosylase domain-containing protein compare
SGL_RS14425 -2.8 -3.6 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS09720 -2.7 -1.9 beta-ketoacyl-ACP synthase compare
SGL_RS02460 -2.7 -4.1 phosphate signaling complex protein PhoU compare
SGL_RS14105 -2.7 -3.6 2-succinylbenzoate--CoA ligase compare
SGL_RS17125 -2.7 -5.2 inositol monophosphatase family protein compare
SGL_RS09820 -2.7 -4.2 ribosome maturation factor RimM compare
SGL_RS16915 -2.6 -4.9 trigger factor compare
SGL_RS14905 -2.6 -4.9 30S ribosomal protein PSRP-3 compare
SGL_RS10775 -2.6 -7.3 DUF3326 domain-containing protein compare
SGL_RS12400 -2.6 -2.5 lysophospholipid acyltransferase family protein compare
SGL_RS03790 -2.6 -3.0 GTPase ObgE compare
SGL_RS05390 -2.6 -6.3 Na(+)/H(+) antiporter subunit B compare
SGL_RS03970 -2.6 -2.4 thiamine phosphate synthase compare
SGL_RS03520 -2.6 -3.4 ABC transporter permease compare
SGL_RS09385 -2.5 -1.7 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS03550 -2.5 -10.3 CDP-glucose 4,6-dehydratase compare
SGL_RS03060 -2.5 -5.1 phosphoadenosine phosphosulfate reductase compare
SGL_RS08535 -2.5 -3.0 NIL domain-containing protein compare
SGL_RS05370 -2.4 -2.9 Na+/H+ antiporter subunit E compare
SGL_RS13495 -2.4 -11.0 AarF/ABC1/UbiB kinase family protein compare
SGL_RS13905 -2.4 -6.2 hypothetical protein compare
SGL_RS12340 -2.4 -10.3 hypothetical protein compare
SGL_RS18300 -2.4 -3.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS04720 -2.4 -1.6 iron uptake porin compare
SGL_RS14045 -2.3 -5.6 hypothetical protein compare
SGL_RS05440 -2.3 -2.2 ACP S-malonyltransferase compare
SGL_RS11025 -2.3 -7.0 oxidoreductase compare
SGL_RS03425 -2.3 -2.6 precorrin-3B C(17)-methyltransferase compare
SGL_RS15530 -2.3 -2.5 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS07840 -2.2 -2.1 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS09160 -2.2 -2.5 thioredoxin family protein compare
SGL_RS06585 -2.2 -3.2 nitrate ABC transporter ATP-binding protein compare
SGL_RS16735 -2.2 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS03085 -2.2 -5.8 DUF2862 domain-containing protein compare
SGL_RS12540 -2.1 -9.3 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS08710 -2.1 -2.8 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS12920 -2.1 -2.1 hypothetical protein compare
SGL_RS12585 -2.1 -3.3 ABC transporter permease subunit compare
SGL_RS17330 -2.0 -7.8 biosynthetic arginine decarboxylase compare
SGL_RS04660 -2.0 -2.9 phycobilisome rod-core linker polypeptide compare
SGL_RS07605 -2.0 -3.1 HEAT repeat domain-containing protein compare
SGL_RS04490 -2.0 -3.2 2TM domain-containing protein compare
SGL_RS06590 -2.0 -4.2 nitrate ABC transporter permease compare
SGL_RS08650 -2.0 -8.1 S-layer homology domain-containing protein compare
SGL_RS16545 -2.0 -10.6 LdpA C-terminal domain-containing domain compare
SGL_RS15560 -2.0 -2.3 dethiobiotin synthase compare
SGL_RS14445 -2.0 -2.9 hypothetical protein compare
SGL_RS10320 -1.9 -2.5 ribosome biogenesis GTPase Der compare
SGL_RS02375 -1.9 -8.2 DUF3086 domain-containing protein compare
SGL_RS07930 -1.9 -8.8 hypothetical protein compare
SGL_RS15700 -1.8 -8.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS06110 -1.8 -3.5 glycosyltransferase family 4 protein compare
SGL_RS17305 -1.8 -3.0 pyrroline-5-carboxylate reductase compare
SGL_RS05375 -1.8 -3.0 hypothetical protein compare
SGL_RS03185 -1.8 -2.3 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS13370 -1.8 -3.2 exonuclease SbcCD subunit D compare
SGL_RS09970 -1.7 -2.1 DUF29 domain-containing protein compare
SGL_RS05470 -1.7 -1.9 dihydropteroate synthase compare
SGL_RS06800 -1.6 -7.4 glutathione synthase compare
SGL_RS12745 -1.6 -2.9 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS10155 -1.6 -3.4 hypothetical protein compare
SGL_RS03545 -1.6 -4.5 glucose-1-phosphate cytidylyltransferase compare
SGL_RS17470 -1.6 -2.7 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS16860 -1.6 -6.2 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS15620 -1.6 -2.3 cobyric acid synthase CobQ compare
SGL_RS07565 -1.6 -3.0 hypothetical protein compare
SGL_RS04775 -1.6 -5.4 alpha/beta hydrolase compare
SGL_RS04390 -1.5 -3.4 DUF433 domain-containing protein compare
SGL_RS02520 -1.5 -3.5 thioredoxin-dependent thiol peroxidase compare
SGL_RS11985 -1.5 -1.6 LysR family transcriptional regulator compare
SGL_RS03950 -1.5 -7.0 homocysteine biosynthesis protein compare
SGL_RS03585 -1.5 -7.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS06355 -1.5 -1.9 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS05240 -1.5 -2.6 phycobilisome linker polypeptide compare
SGL_RS05380 -1.5 -2.8 monovalent cation/H(+) antiporter subunit G compare
SGL_RS15655 -1.5 -10.7 asparaginase compare
SGL_RS09395 -1.5 -1.7 aldo/keto reductase compare
SGL_RS15865 -1.5 -3.4 septum site-determining protein MinD compare
SGL_RS02525 -1.5 -3.5 hypothetical protein compare
SGL_RS11035 -1.5 -1.7 LapA family protein compare
SGL_RS02580 -1.4 -2.1 DUF1818 family protein compare
SGL_RS12755 -1.4 -7.7 IMS domain-containing protein compare
SGL_RS06600 -1.4 -7.2 anthranilate phosphoribosyltransferase family protein compare
SGL_RS16360 -1.4 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS18170 -1.4 -2.4 PspA/IM30 family protein compare
SGL_RS02850 -1.4 -5.0 uracil phosphoribosyltransferase compare
SGL_RS11945 -1.4 -7.1 sirohydrochlorin chelatase compare
SGL_RS12575 -1.4 -2.0 riboflavin synthase compare
SGL_RS06755 -1.4 -6.3 bacterioferritin-associated ferredoxin compare
SGL_RS02515 -1.4 -6.3 M56 family metallopeptidase compare
SGL_RS12910 -1.4 -5.6 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
SGL_RS09845 -1.3 -3.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS16950 -1.3 -5.5 phosphoketolase compare
SGL_RS08495 -1.3 -7.4 DUF3370 domain-containing protein compare
SGL_RS18215 -1.3 -4.8 pentapeptide repeat-containing protein compare
SGL_RS04155 -1.3 -2.8 reverse transcriptase domain-containing protein compare
SGL_RS03560 -1.3 -5.6 class I SAM-dependent methyltransferase compare
SGL_RS14780 -1.3 -6.3 cyanase compare
SGL_RS00830 -1.3 -3.2 hypothetical protein compare
SGL_RS11760 -1.3 -6.6 radical SAM protein compare
SGL_RS08115 -1.3 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS02145 -1.3 -7.3 metallophosphoesterase compare
SGL_RS09890 -1.3 -3.1 DUF3007 family protein compare
SGL_RS06275 -1.3 -2.4 hypothetical protein compare
SGL_RS09905 -1.3 -3.1 biotin/lipoate A/B protein ligase family protein compare
SGL_RS02095 -1.3 -4.9 dTDP-4-dehydrorhamnose reductase compare
SGL_RS02475 -1.3 -2.9 YlxR family protein compare
SGL_RS03590 -1.3 -2.5 ATP-grasp domain-containing protein compare
SGL_RS12235 -1.3 -1.4 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS12925 -1.2 -4.1 AAA family ATPase compare
SGL_RS17405 -1.2 -3.6 L-2-hydroxyglutarate oxidase compare
SGL_RS12335 -1.2 -4.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS08605 -1.2 -3.2 DUF3120 domain-containing protein compare
SGL_RS04735 -1.2 -2.4 hypothetical protein compare
SGL_RS05465 -1.2 -2.4 hypothetical protein compare
SGL_RS11135 -1.1 -1.4 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS18320 -1.1 -6.6 serine/threonine-protein kinase compare
SGL_RS03555 -1.1 -6.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS00825 -1.1 -4.6 hypothetical protein compare
SGL_RS14865 -1.1 -1.7 type I methionyl aminopeptidase compare
SGL_RS11240 -1.1 -1.5 photosystem I reaction center subunit IV compare
SGL_RS04230 -1.1 -2.3 exonuclease subunit SbcC compare
SGL_RS08765 -1.1 -1.2 2-phosphosulfolactate phosphatase family protein compare
SGL_RS07180 -1.1 -3.9 carboxynorspermidine decarboxylase compare
SGL_RS09975 -1.0 -1.9 DUF29 domain-containing protein compare
SGL_RS14860 -1.0 -1.7 8-amino-7-oxononanoate synthase compare
SGL_RS15785 -1.0 -6.3 ParA family protein compare
SGL_RS08160 -1.0 -3.5 hypothetical protein compare
SGL_RS15370 -1.0 -3.1 DnaJ C-terminal domain-containing protein compare
SGL_RS14025 -1.0 -6.5 gamma-glutamyl-phosphate reductase compare
SGL_RS08175 -1.0 -2.0 serine hydrolase compare
SGL_RS17515 -1.0 -4.0 SMC-Scp complex subunit ScpB compare
SGL_RS03870 -1.0 -6.1 histidinol dehydrogenase compare
SGL_RS18100 -1.0 -3.0 SH3 domain-containing protein compare
SGL_RS03490 -1.0 -3.7 YaaW family protein compare
SGL_RS12025 -1.0 -3.2 NAD(+) kinase compare
SGL_RS11325 -1.0 -3.5 pitrilysin family protein compare
SGL_RS19400 -1.0 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in metal stress experiments

For metal stress Sodium m-arsenite across organisms