Experiment set1S123 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media supplemented with 3 .M CuSO4

200 most important genes:

  gene name fitness t score description  
SGL_RS03625 -5.7 -8.7 glycosyltransferase family 1 protein compare
SGL_RS03540 -5.2 -3.6 ABC transporter ATP-binding protein compare
SGL_RS02460 -4.9 -3.3 phosphate signaling complex protein PhoU compare
SGL_RS10775 -4.6 -6.3 DUF3326 domain-containing protein compare
SGL_RS12870 -4.4 -3.0 YqeG family HAD IIIA-type phosphatase compare
SGL_RS07200 -4.2 -2.9 LCP family protein compare
SGL_RS17330 -4.2 -5.0 biosynthetic arginine decarboxylase compare
SGL_RS06675 -4.1 -4.0 ABC transporter ATP-binding protein compare
SGL_RS03585 -4.1 -8.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS03550 -3.9 -8.6 CDP-glucose 4,6-dehydratase compare
SGL_RS04510 -3.8 -4.9 DUF561 domain-containing protein compare
SGL_RS03560 -3.7 -6.6 class I SAM-dependent methyltransferase compare
SGL_RS03840 -3.7 -2.5 adenylyl-sulfate kinase compare
SGL_RS06020 -3.6 -3.5 sugar ABC transporter permease compare
SGL_RS17125 -3.6 -4.2 inositol monophosphatase family protein compare
SGL_RS16545 -3.6 -9.0 LdpA C-terminal domain-containing domain compare
SGL_RS03675 -3.6 -2.2 hypothetical protein compare
SGL_RS15700 -3.5 -8.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS12770 -3.3 -2.3 uroporphyrinogen-III C-methyltransferase compare
SGL_RS08790 -3.3 -2.3 carbohydrate ABC transporter permease compare
SGL_RS03545 -3.3 -2.8 glucose-1-phosphate cytidylyltransferase compare
SGL_RS14190 -3.3 -7.1 phosphate ABC transporter permease PstA compare
SGL_RS03630 -3.3 -4.8 glycosyltransferase family 2 protein compare
SGL_RS15425 -3.2 -5.4 cobalamin biosynthesis protein CobW compare
SGL_RS05980 -3.2 -2.2 hypothetical protein compare
SGL_RS14540 -3.2 -2.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS15045 -3.1 -4.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS13535 -3.1 -2.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS12490 -3.1 -3.0 glutamate--cysteine ligase compare
SGL_RS05880 -3.1 -3.6 sugar ABC transporter substrate-binding protein compare
SGL_RS19585 -3.1 -3.0 hypothetical protein compare
SGL_RS03555 -3.0 -8.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS15655 -2.9 -12.5 asparaginase compare
SGL_RS11000 -2.9 -2.0 sulfate adenylyltransferase compare
SGL_RS13870 -2.9 -2.0 rRNA maturation RNase YbeY compare
SGL_RS14185 -2.9 -4.2 phosphate ABC transporter ATP-binding protein PstB compare
SGL_RS14905 -2.9 -3.9 30S ribosomal protein PSRP-3 compare
SGL_RS03635 -2.8 -4.7 glycosyltransferase family 4 protein compare
SGL_RS16880 -2.8 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS11135 -2.8 -1.8 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS09845 -2.8 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS04960 -2.8 -2.8 VOC family protein compare
SGL_RS17405 -2.7 -4.8 L-2-hydroxyglutarate oxidase compare
SGL_RS08275 -2.7 -1.8 tetratricopeptide repeat protein compare
SGL_RS13465 -2.7 -5.9 class II fumarate hydratase compare
SGL_RS03590 -2.6 -5.3 ATP-grasp domain-containing protein compare
SGL_RS12745 -2.6 -1.8 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS02955 -2.6 -3.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS16690 -2.6 -4.6 adenosine kinase compare
SGL_RS04360 -2.6 -7.2 5-formyltetrahydrofolate cyclo-ligase compare
SGL_RS14435 -2.5 -1.7 cobalt transporter CbiM compare
SGL_RS09295 -2.5 -11.6 alpha/beta hydrolase compare
SGL_RS06430 -2.5 -2.4 glycosyltransferase family 2 protein compare
SGL_RS18100 -2.5 -4.0 SH3 domain-containing protein compare
SGL_RS13510 -2.5 -5.4 transglycosylase domain-containing protein compare
SGL_RS11510 -2.4 -2.8 dihydroneopterin aldolase compare
SGL_RS05210 -2.4 -4.9 SLBB domain-containing protein compare
SGL_RS14430 -2.4 -2.9 cobalt ECF transporter T component CbiQ compare
SGL_RS16100 -2.4 -6.2 heavy metal translocating P-type ATPase compare
SGL_RS12030 -2.4 -1.6 extracellular solute-binding protein compare
SGL_RS11305 -2.3 -3.5 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS12575 -2.3 -1.6 riboflavin synthase compare
SGL_RS13175 -2.3 -4.1 GerMN domain-containing protein compare
SGL_RS11955 -2.3 -2.2 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS02580 -2.2 -1.8 DUF1818 family protein compare
SGL_RS00195 -2.2 -8.9 glycosyltransferase family 2 protein compare
SGL_RS07180 -2.2 -4.5 carboxynorspermidine decarboxylase compare
SGL_RS09905 -2.1 -2.1 biotin/lipoate A/B protein ligase family protein compare
SGL_RS06130 -2.1 -2.5 anti-sigma regulatory factor compare
SGL_RS14445 -2.1 -2.0 hypothetical protein compare
SGL_RS18365 -2.1 -7.2 glycosyltransferase family 9 protein compare
SGL_RS04775 -2.1 -4.6 alpha/beta hydrolase compare
SGL_RS17650 -2.1 -1.9 hypothetical protein compare
SGL_RS15710 -2.0 -13.1 HD family phosphohydrolase compare
SGL_RS07130 -2.0 -10.6 AAA-like domain-containing protein compare
SGL_RS03605 -2.0 -6.9 cephalosporin hydroxylase family protein compare
SGL_RS13055 -2.0 -1.4 protein translocase subunit SecF compare
SGL_RS02305 -2.0 -7.5 NAD-dependent malic enzyme compare
SGL_RS14105 -2.0 -1.9 2-succinylbenzoate--CoA ligase compare
SGL_RS10830 -2.0 -9.9 pyridoxamine 5'-phosphate oxidase compare
SGL_RS15560 -1.9 -1.3 dethiobiotin synthase compare
SGL_RS14425 -1.9 -2.2 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS00220 -1.9 -11.5 oligosaccharide flippase family protein compare
SGL_RS07565 -1.9 -4.5 hypothetical protein compare
SGL_RS11550 -1.9 -2.0 hypothetical protein compare
SGL_RS12100 -1.9 -11.7 AAA-like domain-containing protein compare
SGL_RS08710 -1.9 -1.3 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS09820 -1.9 -2.8 ribosome maturation factor RimM compare
SGL_RS05560 -1.9 -2.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS12400 -1.9 -1.3 lysophospholipid acyltransferase family protein compare
SGL_RS17810 -1.9 -9.7 iron uptake porin compare
SGL_RS06800 -1.9 -8.4 glutathione synthase compare
SGL_RS17520 -1.8 -2.5 DUF3352 domain-containing protein compare
SGL_RS16940 -1.8 -2.1 dephospho-CoA kinase compare
SGL_RS13245 -1.8 -2.8 DUF3747 domain-containing protein compare
SGL_RS03790 -1.8 -1.7 GTPase ObgE compare
SGL_RS05465 -1.8 -2.0 hypothetical protein compare
SGL_RS12585 -1.8 -1.7 ABC transporter permease subunit compare
SGL_RS16860 -1.8 -5.3 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS14180 -1.8 -7.5 phosphate ABC transporter ATP-binding protein PstB compare
SGL_RS00825 -1.7 -4.5 hypothetical protein compare
SGL_RS11760 -1.7 -6.0 radical SAM protein compare
SGL_RS13910 -1.7 -3.3 phasin family protein compare
SGL_RS14195 -1.7 -4.4 phosphate ABC transporter permease subunit PstC compare
SGL_RS02220 -1.7 -1.6 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS10360 -1.7 -2.1 hypothetical protein compare
SGL_RS03670 -1.7 -5.8 glycosyltransferase compare
SGL_RS13285 -1.6 -6.0 Sll0314/Alr1548 family TPR repeat-containing protein compare
SGL_RS07545 -1.6 -3.0 serine/threonine-protein phosphatase compare
SGL_RS08175 -1.6 -1.5 serine hydrolase compare
SGL_RS16360 -1.6 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS15130 -1.6 -5.6 dTDP-glucose 4,6-dehydratase compare
SGL_RS03420 -1.6 -3.4 UbiD family decarboxylase compare
SGL_RS02795 -1.6 -4.1 flavin prenyltransferase UbiX compare
SGL_RS07170 -1.6 -1.4 glycine cleavage system protein GcvH compare
SGL_RS13195 -1.6 -3.0 Ig-like domain-containing protein compare
SGL_RS00110 -1.5 -2.2 AAA family ATPase compare
SGL_RS03520 -1.5 -2.0 ABC transporter permease compare
SGL_RS15315 -1.5 -6.5 30S ribosomal protein S12 methylthiotransferase RimO compare
SGL_RS03425 -1.5 -1.4 precorrin-3B C(17)-methyltransferase compare
SGL_RS02840 -1.5 -2.1 MBL fold metallo-hydrolase compare
SGL_RS15535 -1.5 -5.9 EamA family transporter compare
SGL_RS09305 -1.5 -2.8 adenosyl-hopene transferase HpnH compare
SGL_RS17740 -1.5 -7.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
SGL_RS06600 -1.5 -6.3 anthranilate phosphoribosyltransferase family protein compare
SGL_RS18300 -1.5 -1.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS15870 -1.5 -4.1 septum site-determining protein MinC compare
SGL_RS05435 -1.5 -1.4 heavy metal translocating P-type ATPase compare
SGL_RS17685 -1.5 -5.4 ArsB/NhaD family transporter compare
SGL_RS00245 -1.5 -8.4 glycosyltransferase compare
SGL_RS17735 -1.5 -7.3 hypothetical protein compare
SGL_RS08155 -1.5 -1.6 Spy/CpxP family protein refolding chaperone compare
SGL_RS10320 -1.4 -1.4 ribosome biogenesis GTPase Der compare
SGL_RS04820 -1.4 -1.6 LysR family transcriptional regulator compare
SGL_RS04995 -1.4 -1.6 hypothetical protein compare
SGL_RS11395 -1.4 -6.1 TlyA family RNA methyltransferase compare
SGL_RS14930 -1.4 -4.8 type I methionyl aminopeptidase compare
SGL_RS03870 -1.4 -7.4 histidinol dehydrogenase compare
SGL_RS18270 -1.4 -2.6 family 10 glycosylhydrolase compare
SGL_RS03505 -1.4 -7.5 exopolysaccharide transport family protein compare
SGL_RS07840 -1.4 -1.3 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS03970 -1.4 -1.3 thiamine phosphate synthase compare
SGL_RS14335 -1.4 -1.3 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS00830 -1.4 -2.0 hypothetical protein compare
SGL_RS12545 -1.4 -1.3 GTPase Era compare
SGL_RS07580 -1.4 -5.6 exopolysaccharide biosynthesis protein compare
SGL_RS10790 -1.4 -3.6 DUF4359 domain-containing protein compare
SGL_RS03640 -1.4 -4.7 UDP-glucose 4-epimerase GalE compare
SGL_RS14575 -1.4 -1.3 RNA-binding protein compare
SGL_RS05440 -1.3 -1.2 ACP S-malonyltransferase compare
SGL_RS09395 -1.3 -0.9 aldo/keto reductase compare
SGL_RS02380 -1.3 -6.7 cysteine desulfurase family protein compare
SGL_RS10480 -1.3 -5.2 metallophosphoesterase family protein compare
SGL_RS05260 -1.3 -3.6 hypothetical protein compare
SGL_RS17230 -1.3 -3.3 L-aspartate oxidase compare
SGL_RS02785 -1.3 -4.3 CRR6 family NdhI maturation factor compare
SGL_RS03450 -1.3 -2.8 permease compare
SGL_RS11765 -1.3 -3.5 hypothetical protein compare
SGL_RS12560 -1.3 -6.4 ABC transporter permease compare
SGL_RS02070 -1.3 -2.0 photosystem II reaction center protein Psb28 compare
SGL_RS12375 -1.3 -1.8 hypothetical protein compare
SGL_RS04085 -1.3 -1.7 YlqD family protein compare
SGL_RS08095 -1.3 -6.3 peptide ABC transporter substrate-binding protein compare
SGL_RS15620 -1.3 -1.4 cobyric acid synthase CobQ compare
SGL_RS01995 -1.2 -4.3 biopolymer transporter ExbD compare
SGL_RS10585 -1.2 -5.9 MFS transporter compare
SGL_RS05330 -1.2 -6.4 ABC transporter ATP-binding protein compare
SGL_RS03365 -1.2 -1.7 Ycf66 family protein compare
SGL_RS12540 -1.2 -3.1 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS11590 -1.2 -3.8 hypothetical protein compare
SGL_RS12335 -1.2 -3.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS14965 -1.2 -5.6 DUF2779 domain-containing protein compare
SGL_RS15845 -1.2 -5.1 polyphosphate kinase 1 compare
SGL_RS02145 -1.2 -5.6 metallophosphoesterase compare
SGL_RS15630 -1.2 -5.0 2Fe-2S iron-sulfur cluster-binding protein compare
SGL_RS15435 -1.2 -3.9 PD40 domain-containing protein compare
SGL_RS02165 -1.2 -3.4 hypothetical protein compare
SGL_RS16670 -1.2 -7.6 DUF5942 domain-containing protein compare
SGL_RS13115 -1.2 -3.3 DUF4126 domain-containing protein compare
SGL_RS03185 -1.2 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS00225 -1.1 -8.1 glycosyltransferase compare
SGL_RS07600 -1.1 -3.9 fumarylacetoacetate hydrolase family protein compare
SGL_RS16865 -1.1 -2.5 sulfurtransferase TusA family protein compare
SGL_RS00190 -1.1 -6.3 sulfotransferase compare
SGL_RS13555 -1.1 -2.9 aldehyde oxygenase (deformylating) compare
SGL_RS10245 -1.1 -4.5 glycoside hydrolase family protein compare
SGL_RS13560 -1.1 -5.6 glucose-1-phosphate thymidylyltransferase compare
SGL_RS00210 -1.1 -4.5 hypothetical protein compare
SGL_RS13495 -1.1 -5.3 AarF/ABC1/UbiB kinase family protein compare
SGL_RS17340 -1.1 -0.9 quinolinate synthase NadA compare
SGL_RS14320 -1.1 -4.4 site-2 protease family protein compare
SGL_RS19605 -1.1 -2.3 hypothetical protein compare
SGL_RS09720 -1.1 -1.2 beta-ketoacyl-ACP synthase compare
SGL_RS02905 -1.1 -6.1 Tab2/Atab2 family RNA-binding protein compare
SGL_RS09110 -1.1 -2.1 squalene--hopene cyclase compare
SGL_RS03655 -1.1 -2.6 glycosyltransferase family 2 protein compare
SGL_RS13680 -1.1 -5.9 chaperonin GroEL compare
SGL_RS06795 -1.1 -1.5 glutaredoxin 3 compare
SGL_RS07525 -1.0 -2.9 CDGSH iron-sulfur domain-containing protein compare
SGL_RS00250 -1.0 -3.8 WecB/TagA/CpsF family glycosyltransferase compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in metal stress experiments

For metal stress Copper (II) sulfate pentahydrate across organisms