Experiment set1S116 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media bubbled with air enriched in 5% CO2

200 most important genes:

  gene name fitness t score description  
SGL_RS10775 -6.0 -5.8 DUF3326 domain-containing protein compare
SGL_RS09430 -5.9 -19.4 leucyl aminopeptidase compare
SGL_RS17330 -5.2 -3.6 biosynthetic arginine decarboxylase compare
SGL_RS03380 -5.1 -3.5 sulfite reductase, ferredoxin dependent compare
SGL_RS03060 -4.8 -4.6 phosphoadenosine phosphosulfate reductase compare
SGL_RS16880 -4.8 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS12335 -4.7 -5.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS06130 -4.6 -3.2 anti-sigma regulatory factor compare
SGL_RS05390 -4.6 -5.4 Na(+)/H(+) antiporter subunit B compare
SGL_RS16705 -4.5 -5.3 diadenylate cyclase CdaA compare
SGL_RS04510 -4.4 -4.8 DUF561 domain-containing protein compare
SGL_RS12235 -4.4 -3.0 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS12870 -4.4 -4.2 YqeG family HAD IIIA-type phosphatase compare
SGL_RS02260 -4.2 -2.9 HEAT repeat domain-containing protein compare
SGL_RS17230 -4.2 -7.4 L-aspartate oxidase compare
SGL_RS03365 -4.1 -4.0 Ycf66 family protein compare
SGL_RS14930 -4.1 -6.8 type I methionyl aminopeptidase compare
SGL_RS16545 -4.1 -9.8 LdpA C-terminal domain-containing domain compare
SGL_RS12770 -4.0 -2.7 uroporphyrinogen-III C-methyltransferase compare
SGL_RS11305 -3.8 -4.5 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS05375 -3.8 -3.6 hypothetical protein compare
SGL_RS02515 -3.7 -7.3 M56 family metallopeptidase compare
SGL_RS14920 -3.7 -2.5 cation:proton antiporter compare
SGL_RS15425 -3.7 -6.0 cobalamin biosynthesis protein CobW compare
SGL_RS13870 -3.7 -2.5 rRNA maturation RNase YbeY compare
SGL_RS12490 -3.7 -4.3 glutamate--cysteine ligase compare
SGL_RS06595 -3.6 -3.5 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS15700 -3.6 -7.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS05385 -3.6 -6.4 DUF4040 domain-containing protein compare
SGL_RS12985 -3.6 -2.5 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS05380 -3.6 -2.4 monovalent cation/H(+) antiporter subunit G compare
SGL_RS06430 -3.5 -2.4 glycosyltransferase family 2 protein compare
SGL_RS15045 -3.5 -5.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS14430 -3.5 -4.1 cobalt ECF transporter T component CbiQ compare
SGL_RS16730 -3.4 -9.2 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
SGL_RS08175 -3.4 -2.3 serine hydrolase compare
SGL_RS12575 -3.4 -3.3 riboflavin synthase compare
SGL_RS01900 -3.4 -6.7 GDP-L-fucose synthase compare
SGL_RS05470 -3.3 -3.2 dihydropteroate synthase compare
SGL_RS14445 -3.3 -3.1 hypothetical protein compare
SGL_RS05370 -3.2 -2.3 Na+/H+ antiporter subunit E compare
SGL_RS11510 -3.2 -3.7 dihydroneopterin aldolase compare
SGL_RS11945 -3.2 -7.1 sirohydrochlorin chelatase compare
SGL_RS02460 -3.2 -4.7 phosphate signaling complex protein PhoU compare
SGL_RS11675 -3.2 -5.2 chromophore lyase CpcT/CpeT compare
SGL_RS15655 -3.2 -13.1 asparaginase compare
SGL_RS06590 -3.1 -3.0 nitrate ABC transporter permease compare
SGL_RS11000 -3.1 -2.1 sulfate adenylyltransferase compare
SGL_RS10320 -3.1 -2.1 ribosome biogenesis GTPase Der compare
SGL_RS12585 -3.1 -2.9 ABC transporter permease subunit compare
SGL_RS05440 -3.0 -2.0 ACP S-malonyltransferase compare
SGL_RS16100 -3.0 -6.6 heavy metal translocating P-type ATPase compare
SGL_RS07605 -3.0 -2.8 HEAT repeat domain-containing protein compare
SGL_RS12030 -3.0 -2.8 extracellular solute-binding protein compare
SGL_RS08765 -3.0 -2.8 2-phosphosulfolactate phosphatase family protein compare
SGL_RS03790 -2.9 -2.8 GTPase ObgE compare
SGL_RS02475 -2.9 -3.4 YlxR family protein compare
SGL_RS09395 -2.9 -2.7 aldo/keto reductase compare
SGL_RS14425 -2.9 -3.8 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS14435 -2.9 -1.9 cobalt transporter CbiM compare
SGL_RS03085 -2.9 -4.5 DUF2862 domain-containing protein compare
SGL_RS03840 -2.9 -1.9 adenylyl-sulfate kinase compare
SGL_RS01905 -2.9 -11.3 GDP-mannose 4,6-dehydratase compare
SGL_RS17470 -2.8 -3.8 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS03425 -2.8 -1.9 precorrin-3B C(17)-methyltransferase compare
SGL_RS04650 -2.8 -4.7 tetratricopeptide repeat protein compare
SGL_RS03250 -2.8 -4.5 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS17340 -2.8 -1.9 quinolinate synthase NadA compare
SGL_RS08275 -2.7 -1.9 tetratricopeptide repeat protein compare
SGL_RS05980 -2.7 -3.6 hypothetical protein compare
SGL_RS04525 -2.7 -2.6 photosynthesis system II assembly factor Ycf48 compare
SGL_RS08710 -2.6 -3.1 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS16360 -2.6 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS02220 -2.6 -2.5 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS02145 -2.6 -9.2 metallophosphoesterase compare
SGL_RS04775 -2.6 -5.9 alpha/beta hydrolase compare
SGL_RS18300 -2.6 -1.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS14540 -2.6 -1.7 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS08155 -2.6 -2.4 Spy/CpxP family protein refolding chaperone compare
SGL_RS03970 -2.6 -1.8 thiamine phosphate synthase compare
SGL_RS14335 -2.6 -2.4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS03625 -2.6 -13.9 glycosyltransferase family 1 protein compare
SGL_RS17305 -2.6 -2.9 pyrroline-5-carboxylate reductase compare
SGL_RS07985 -2.6 -7.4 glycosyltransferase family 39 protein compare
SGL_RS12400 -2.6 -2.4 lysophospholipid acyltransferase family protein compare
SGL_RS17520 -2.5 -2.4 DUF3352 domain-containing protein compare
SGL_RS14780 -2.5 -8.1 cyanase compare
SGL_RS09385 -2.5 -1.7 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS02580 -2.4 -2.7 DUF1818 family protein compare
SGL_RS13770 -2.4 -2.1 DUF3082 domain-containing protein compare
SGL_RS17650 -2.4 -2.2 hypothetical protein compare
SGL_RS02955 -2.4 -3.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS13055 -2.4 -1.6 protein translocase subunit SecF compare
SGL_RS03540 -2.3 -7.2 ABC transporter ATP-binding protein compare
SGL_RS05435 -2.3 -1.6 heavy metal translocating P-type ATPase compare
SGL_RS08495 -2.3 -8.6 DUF3370 domain-containing protein compare
SGL_RS06675 -2.3 -3.8 ABC transporter ATP-binding protein compare
SGL_RS15620 -2.3 -2.2 cobyric acid synthase CobQ compare
SGL_RS13535 -2.3 -2.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS04660 -2.2 -4.2 phycobilisome rod-core linker polypeptide compare
SGL_RS11985 -2.2 -1.9 LysR family transcriptional regulator compare
SGL_RS02665 -2.2 -1.5 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS07870 -2.2 -2.8 Ycf51 family protein compare
SGL_RS07200 -2.2 -2.5 LCP family protein compare
SGL_RS14505 -2.2 -5.2 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS12545 -2.2 -2.0 GTPase Era compare
SGL_RS03520 -2.1 -4.6 ABC transporter permease compare
SGL_RS04230 -2.1 -2.4 exonuclease subunit SbcC compare
SGL_RS16940 -2.1 -2.7 dephospho-CoA kinase compare
SGL_RS08605 -2.1 -4.7 DUF3120 domain-containing protein compare
SGL_RS14105 -2.1 -2.0 2-succinylbenzoate--CoA ligase compare
SGL_RS02375 -2.1 -6.5 DUF3086 domain-containing protein compare
SGL_RS13550 -2.1 -2.3 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS16915 -2.0 -4.2 trigger factor compare
SGL_RS05880 -2.0 -2.9 sugar ABC transporter substrate-binding protein compare
SGL_RS13685 -2.0 -10.0 ABC transporter ATP-binding protein compare
SGL_RS07840 -1.9 -2.2 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS06755 -1.9 -4.9 bacterioferritin-associated ferredoxin compare
SGL_RS07650 -1.9 -8.5 aminoglycoside phosphotransferase family protein compare
SGL_RS03550 -1.9 -11.2 CDP-glucose 4,6-dehydratase compare
SGL_RS13555 -1.9 -3.2 aldehyde oxygenase (deformylating) compare
SGL_RS14860 -1.9 -2.7 8-amino-7-oxononanoate synthase compare
SGL_RS17270 -1.8 -3.8 hypothetical protein compare
SGL_RS04720 -1.8 -1.2 iron uptake porin compare
SGL_RS10160 -1.8 -5.4 B12-binding domain-containing radical SAM protein compare
SGL_RS04820 -1.8 -2.4 LysR family transcriptional regulator compare
SGL_RS17405 -1.8 -5.2 L-2-hydroxyglutarate oxidase compare
SGL_RS15560 -1.8 -2.0 dethiobiotin synthase compare
SGL_RS18320 -1.7 -7.3 serine/threonine-protein kinase compare
SGL_RS06020 -1.7 -3.4 sugar ABC transporter permease compare
SGL_RS06585 -1.7 -2.4 nitrate ABC transporter ATP-binding protein compare
SGL_RS17685 -1.7 -8.2 ArsB/NhaD family transporter compare
SGL_RS15530 -1.7 -2.0 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS13510 -1.6 -5.4 transglycosylase domain-containing protein compare
SGL_RS07935 -1.6 -3.2 hypothetical protein compare
SGL_RS14285 -1.6 -3.1 hypothetical protein compare
SGL_RS17125 -1.6 -2.6 inositol monophosphatase family protein compare
SGL_RS06440 -1.6 -4.9 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS04490 -1.6 -2.5 2TM domain-containing protein compare
SGL_RS11135 -1.6 -2.0 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS03185 -1.6 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS03775 -1.6 -4.1 membrane protein compare
SGL_RS04390 -1.6 -2.0 DUF433 domain-containing protein compare
SGL_RS08790 -1.6 -2.2 carbohydrate ABC transporter permease compare
SGL_RS02795 -1.6 -5.9 flavin prenyltransferase UbiX compare
SGL_RS15370 -1.5 -3.4 DnaJ C-terminal domain-containing protein compare
SGL_RS14575 -1.5 -1.5 RNA-binding protein compare
SGL_RS18365 -1.5 -5.8 glycosyltransferase family 9 protein compare
SGL_RS05560 -1.5 -2.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS08115 -1.5 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS11025 -1.4 -4.4 oxidoreductase compare
SGL_RS18180 -1.4 -4.3 ABC transporter permease compare
SGL_RS03560 -1.4 -6.8 class I SAM-dependent methyltransferase compare
SGL_RS16950 -1.4 -6.3 phosphoketolase compare
SGL_RS19585 -1.4 -2.6 hypothetical protein compare
SGL_RS07180 -1.3 -4.2 carboxynorspermidine decarboxylase compare
SGL_RS03420 -1.3 -5.0 UbiD family decarboxylase compare
SGL_RS04335 -1.3 -3.5 GNAT family N-acetyltransferase compare
SGL_RS06600 -1.3 -6.2 anthranilate phosphoribosyltransferase family protein compare
SGL_RS04215 -1.3 -3.6 MlaE family lipid ABC transporter permease subunit compare
SGL_RS03555 -1.3 -7.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS03585 -1.3 -5.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS04550 -1.3 -4.0 glutamate 5-kinase compare
SGL_RS19475 -1.3 -1.1 hypothetical protein compare
SGL_RS02825 -1.3 -7.1 translational GTPase TypA compare
SGL_RS05210 -1.3 -4.9 SLBB domain-containing protein compare
SGL_RS12625 -1.3 -3.5 NAD(P)H-quinone oxidoreductase subunit 4 compare
SGL_RS14510 -1.3 -3.8 DUF3177 family protein compare
SGL_RS17175 -1.2 -2.6 allophycocyanin subunit beta compare
SGL_RS16670 -1.2 -6.8 DUF5942 domain-containing protein compare
SGL_RS03590 -1.2 -3.9 ATP-grasp domain-containing protein compare
SGL_RS00825 -1.2 -3.3 hypothetical protein compare
SGL_RS10305 -1.2 -3.9 PIN/TRAM domain-containing protein compare
SGL_RS14180 -1.2 -6.1 phosphate ABC transporter ATP-binding protein PstB compare
SGL_RS11835 -1.2 -1.7 transcription antitermination factor NusB compare
SGL_RS03950 -1.1 -5.3 homocysteine biosynthesis protein compare
SGL_RS16735 -1.1 -1.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS07940 -1.1 -4.8 type II secretion system protein compare
SGL_RS08950 -1.1 -2.6 DUF2555 domain-containing protein compare
SGL_RS16770 -1.1 -3.8 LptF/LptG family permease compare
SGL_RS04580 -1.1 -2.0 DNA topoisomerase (ATP-hydrolyzing) subunit A compare
SGL_RS02850 -1.1 -3.8 uracil phosphoribosyltransferase compare
SGL_RS13195 -1.1 -3.3 Ig-like domain-containing protein compare
SGL_RS00655 -1.1 -2.0 YlcI/YnfO family protein compare
SGL_RS14025 -1.1 -5.9 gamma-glutamyl-phosphate reductase compare
SGL_RS15480 -1.1 -3.7 biopolymer transporter ExbD compare
SGL_RS03655 -1.1 -3.6 glycosyltransferase family 2 protein compare
SGL_RS12920 -1.1 -1.1 hypothetical protein compare
SGL_RS10155 -1.1 -2.3 hypothetical protein compare
SGL_RS07445 -1.1 -4.7 SpoIIE family protein phosphatase compare
SGL_RS05235 -1.1 -2.1 phycobilisome linker polypeptide compare
SGL_RS03505 -1.0 -6.2 exopolysaccharide transport family protein compare
SGL_RS11950 -1.0 -4.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
SGL_RS12210 -1.0 -6.2 type IV pilus twitching motility protein PilT compare
SGL_RS17865 -1.0 -7.2 Ppx/GppA phosphatase family protein compare
SGL_RS07675 -1.0 -2.4 HpsJ family protein compare
SGL_RS14905 -1.0 -2.1 30S ribosomal protein PSRP-3 compare
SGL_RS09890 -1.0 -3.5 DUF3007 family protein compare
SGL_RS13910 -1.0 -3.0 phasin family protein compare
SGL_RS03640 -1.0 -5.4 UDP-glucose 4-epimerase GalE compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in carbon dioxide experiments