Experiment set1S108 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media and 10 mM glucose= photoheterotrophic growth

200 most important genes:

  gene name fitness t score description  
SGL_RS09345 -8.9 -6.1 NAD(+) kinase compare
SGL_RS17560 -8.8 -6.0 6-phosphogluconolactonase compare
SGL_RS15130 -7.0 -8.7 dTDP-glucose 4,6-dehydratase compare
SGL_RS02795 -6.9 -4.8 flavin prenyltransferase UbiX compare
SGL_RS03520 -6.4 -4.4 ABC transporter permease compare
SGL_RS02105 -6.3 -12.9 glycogen synthase GlgA compare
SGL_RS04775 -6.3 -5.9 alpha/beta hydrolase compare
SGL_RS17405 -6.1 -5.9 L-2-hydroxyglutarate oxidase compare
SGL_RS06375 -6.1 -12.3 glucose-6-phosphate dehydrogenase compare
SGL_RS02785 -6.0 -4.3 CRR6 family NdhI maturation factor compare
SGL_RS06955 -5.8 -9.6 carbohydrate kinase compare
SGL_RS12820 -5.7 -7.8 1,4-alpha-glucan branching enzyme compare
SGL_RS10775 -5.7 -6.1 DUF3326 domain-containing protein compare
SGL_RS04550 -5.6 -3.9 glutamate 5-kinase compare
SGL_RS17500 -5.6 -3.5 DUF370 domain-containing protein compare
SGL_RS12625 -5.6 -3.9 NAD(P)H-quinone oxidoreductase subunit 4 compare
SGL_RS04335 -5.6 -3.9 GNAT family N-acetyltransferase compare
SGL_RS17125 -5.6 -3.9 inositol monophosphatase family protein compare
SGL_RS18320 -5.6 -5.5 serine/threonine-protein kinase compare
SGL_RS03540 -5.4 -7.2 ABC transporter ATP-binding protein compare
SGL_RS05320 -5.4 -8.2 PBP1A family penicillin-binding protein compare
SGL_RS15425 -5.3 -3.7 cobalamin biosynthesis protein CobW compare
SGL_RS03420 -5.2 -5.1 UbiD family decarboxylase compare
SGL_RS12335 -5.2 -3.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS06130 -5.2 -3.5 anti-sigma regulatory factor compare
SGL_RS03060 -5.1 -3.5 phosphoadenosine phosphosulfate reductase compare
SGL_RS17740 -5.1 -9.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
SGL_RS13195 -5.1 -3.5 Ig-like domain-containing protein compare
SGL_RS16880 -5.1 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS13555 -4.9 -3.6 aldehyde oxygenase (deformylating) compare
SGL_RS02460 -4.9 -3.4 phosphate signaling complex protein PhoU compare
SGL_RS02095 -4.9 -5.8 dTDP-4-dehydrorhamnose reductase compare
SGL_RS14905 -4.9 -4.7 30S ribosomal protein PSRP-3 compare
SGL_RS06600 -4.8 -8.6 anthranilate phosphoribosyltransferase family protein compare
SGL_RS10890 -4.8 -11.8 LD-carboxypeptidase compare
SGL_RS16770 -4.8 -5.7 LptF/LptG family permease compare
SGL_RS13560 -4.8 -11.3 glucose-1-phosphate thymidylyltransferase compare
SGL_RS16940 -4.8 -3.3 dephospho-CoA kinase compare
SGL_RS02145 -4.8 -6.5 metallophosphoesterase compare
SGL_RS20180 -4.8 -2.2 membrane protein compare
SGL_RS03625 -4.7 -8.7 glycosyltransferase family 1 protein compare
SGL_RS12000 -4.7 -9.1 type II CAAX endopeptidase family protein compare
SGL_RS07170 -4.7 -3.2 glycine cleavage system protein GcvH compare
SGL_RS13490 -4.6 -5.4 aspartate aminotransferase compare
SGL_RS19475 -4.6 -2.7 hypothetical protein compare
SGL_RS11510 -4.5 -3.1 dihydroneopterin aldolase compare
SGL_RS12870 -4.5 -4.3 YqeG family HAD IIIA-type phosphatase compare
SGL_RS14285 -4.4 -3.0 hypothetical protein compare
SGL_RS03380 -4.4 -6.0 sulfite reductase, ferredoxin dependent compare
SGL_RS06595 -4.4 -3.0 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS14505 -4.3 -5.1 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS12490 -4.3 -4.2 glutamate--cysteine ligase compare
SGL_RS03365 -4.2 -4.1 Ycf66 family protein compare
SGL_RS05980 -4.2 -2.9 hypothetical protein compare
SGL_RS05385 -4.1 -2.9 DUF4040 domain-containing protein compare
SGL_RS07675 -4.1 -4.0 HpsJ family protein compare
SGL_RS03840 -4.1 -2.8 adenylyl-sulfate kinase compare
SGL_RS06585 -4.1 -2.8 nitrate ABC transporter ATP-binding protein compare
SGL_RS11285 -4.1 -4.7 response regulator transcription factor compare
SGL_RS14430 -4.1 -2.8 cobalt ECF transporter T component CbiQ compare
SGL_RS04510 -4.1 -6.6 DUF561 domain-containing protein compare
SGL_RS12745 -4.0 -2.8 glycine cleavage system aminomethyltransferase GcvT compare
SGL_RS05380 -4.0 -2.7 monovalent cation/H(+) antiporter subunit G compare
SGL_RS02665 -4.0 -2.7 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS03080 -4.0 -4.7 transaldolase compare
SGL_RS17120 -4.0 -10.5 response regulator transcription factor compare
SGL_RS12235 -4.0 -2.7 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS06430 -3.9 -2.7 glycosyltransferase family 2 protein compare
SGL_RS13045 -3.9 -13.8 sugar porter family MFS transporter compare
SGL_RS05465 -3.9 -3.7 hypothetical protein compare
SGL_RS03550 -3.9 -11.2 CDP-glucose 4,6-dehydratase compare
SGL_RS02515 -3.8 -5.8 M56 family metallopeptidase compare
SGL_RS03250 -3.8 -3.7 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS12985 -3.8 -2.6 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS16100 -3.8 -4.5 heavy metal translocating P-type ATPase compare
SGL_RS16670 -3.8 -13.1 DUF5942 domain-containing protein compare
SGL_RS06590 -3.8 -3.7 nitrate ABC transporter permease compare
SGL_RS14540 -3.8 -2.5 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS07840 -3.8 -2.6 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS17650 -3.7 -2.6 hypothetical protein compare
SGL_RS05390 -3.7 -4.4 Na(+)/H(+) antiporter subunit B compare
SGL_RS02305 -3.7 -9.2 NAD-dependent malic enzyme compare
SGL_RS12575 -3.7 -2.5 riboflavin synthase compare
SGL_RS15045 -3.7 -7.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS15590 -3.7 -10.1 glucokinase compare
SGL_RS17230 -3.7 -6.5 L-aspartate oxidase compare
SGL_RS16705 -3.7 -5.5 diadenylate cyclase CdaA compare
SGL_RS18095 -3.6 -6.9 TIGR03943 family protein compare
SGL_RS11000 -3.6 -2.5 sulfate adenylyltransferase compare
SGL_RS14445 -3.6 -2.5 hypothetical protein compare
SGL_RS11955 -3.6 -2.5 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS00195 -3.6 -11.8 glycosyltransferase family 2 protein compare
SGL_RS16545 -3.6 -10.3 LdpA C-terminal domain-containing domain compare
SGL_RS05470 -3.5 -2.4 dihydropteroate synthase compare
SGL_RS11135 -3.5 -2.3 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS17330 -3.5 -8.4 biosynthetic arginine decarboxylase compare
SGL_RS03450 -3.5 -5.7 permease compare
SGL_RS08790 -3.5 -2.4 carbohydrate ABC transporter permease compare
SGL_RS07660 -3.5 -3.3 ferredoxin family protein compare
SGL_RS13770 -3.5 -1.6 DUF3082 domain-containing protein compare
SGL_RS03775 -3.5 -3.4 membrane protein compare
SGL_RS00245 -3.5 -12.0 glycosyltransferase compare
SGL_RS00220 -3.4 -18.4 oligosaccharide flippase family protein compare
SGL_RS15700 -3.4 -9.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS14920 -3.4 -2.3 cation:proton antiporter compare
SGL_RS08535 -3.4 -3.0 NIL domain-containing protein compare
SGL_RS11305 -3.4 -3.3 carboxylating nicotinate-nucleotide diphosphorylase compare
SGL_RS03845 -3.4 -5.8 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS17520 -3.4 -2.3 DUF3352 domain-containing protein compare
SGL_RS08175 -3.4 -3.3 serine hydrolase compare
SGL_RS19585 -3.4 -3.9 hypothetical protein compare
SGL_RS13465 -3.4 -8.9 class II fumarate hydratase compare
SGL_RS09695 -3.4 -3.2 hybrid sensor histidine kinase/response regulator compare
SGL_RS02850 -3.3 -6.7 uracil phosphoribosyltransferase compare
SGL_RS00190 -3.3 -9.8 sulfotransferase compare
SGL_RS15840 -3.3 -11.3 class A beta-lactamase compare
SGL_RS17305 -3.3 -2.2 pyrroline-5-carboxylate reductase compare
SGL_RS11985 -3.3 -2.2 LysR family transcriptional regulator compare
SGL_RS09905 -3.3 -2.2 biotin/lipoate A/B protein ligase family protein compare
SGL_RS03555 -3.2 -9.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS09350 -3.2 -7.1 photosystem II biogenesis protein Psp29 compare
SGL_RS14860 -3.2 -2.2 8-amino-7-oxononanoate synthase compare
SGL_RS05370 -3.2 -2.1 Na+/H+ antiporter subunit E compare
SGL_RS03790 -3.1 -2.2 GTPase ObgE compare
SGL_RS03970 -3.1 -2.1 thiamine phosphate synthase compare
SGL_RS03590 -3.1 -7.5 ATP-grasp domain-containing protein compare
SGL_RS17735 -3.1 -10.6 hypothetical protein compare
SGL_RS15310 -3.1 -14.3 response regulator transcription factor compare
SGL_RS13370 -3.1 -3.6 exonuclease SbcCD subunit D compare
SGL_RS14560 -3.1 -4.0 hypothetical protein compare
SGL_RS05440 -3.1 -2.1 ACP S-malonyltransferase compare
SGL_RS18300 -3.0 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS15560 -3.0 -2.1 dethiobiotin synthase compare
SGL_RS14930 -3.0 -5.6 type I methionyl aminopeptidase compare
SGL_RS07545 -3.0 -6.0 serine/threonine-protein phosphatase compare
SGL_RS17685 -3.0 -8.2 ArsB/NhaD family transporter compare
SGL_RS04340 -3.0 -8.9 type I glutamate--ammonia ligase compare
SGL_RS02580 -2.9 -3.2 DUF1818 family protein compare
SGL_RS07200 -2.9 -2.0 LCP family protein compare
SGL_RS16360 -2.9 -2.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS09395 -2.9 -2.0 aldo/keto reductase compare
SGL_RS17470 -2.9 -3.3 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS03585 -2.9 -9.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS06640 -2.8 -1.9 DUF4168 domain-containing protein compare
SGL_RS10320 -2.7 -1.9 ribosome biogenesis GTPase Der compare
SGL_RS12755 -2.7 -9.8 IMS domain-containing protein compare
SGL_RS11675 -2.7 -4.5 chromophore lyase CpcT/CpeT compare
SGL_RS11775 -2.7 -7.3 isoaspartyl peptidase/L-asparaginase compare
SGL_RS12770 -2.7 -1.8 uroporphyrinogen-III C-methyltransferase compare
SGL_RS08275 -2.7 -1.8 tetratricopeptide repeat protein compare
SGL_RS05435 -2.7 -1.8 heavy metal translocating P-type ATPase compare
SGL_RS00225 -2.7 -17.6 glycosyltransferase compare
SGL_RS12030 -2.7 -3.1 extracellular solute-binding protein compare
SGL_RS09860 -2.7 -3.5 carotenoid biosynthesis protein compare
SGL_RS11025 -2.7 -6.7 oxidoreductase compare
SGL_RS05220 -2.7 -5.5 DUF1995 family protein compare
SGL_RS09110 -2.6 -3.6 squalene--hopene cyclase compare
SGL_RS05210 -2.6 -5.6 SLBB domain-containing protein compare
SGL_RS04230 -2.6 -3.5 exonuclease subunit SbcC compare
SGL_RS08710 -2.6 -3.0 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS17115 -2.6 -4.4 DUF3370 domain-containing protein compare
SGL_RS04720 -2.6 -1.8 iron uptake porin compare
SGL_RS02220 -2.6 -1.8 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS11835 -2.6 -1.7 transcription antitermination factor NusB compare
SGL_RS01900 -2.6 -4.4 GDP-L-fucose synthase compare
SGL_RS15530 -2.5 -1.7 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS13055 -2.5 -1.7 protein translocase subunit SecF compare
SGL_RS05560 -2.5 -2.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS17645 -2.5 -11.1 glycoside hydrolase family 57 protein compare
SGL_RS02310 -2.5 -10.7 cysteine synthase A compare
SGL_RS04810 -2.5 -2.0 AarF/ABC1/UbiB kinase family protein compare
SGL_RS03560 -2.5 -6.9 class I SAM-dependent methyltransferase compare
SGL_RS17340 -2.4 -1.3 quinolinate synthase NadA compare
SGL_RS15320 -2.4 -8.1 DEAD/DEAH box helicase compare
SGL_RS12585 -2.4 -2.3 ABC transporter permease subunit compare
SGL_RS04735 -2.4 -2.7 hypothetical protein compare
SGL_RS13855 -2.4 -5.5 hypothetical protein compare
SGL_RS14425 -2.3 -2.7 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS14435 -2.3 -1.5 cobalt transporter CbiM compare
SGL_RS09820 -2.3 -3.0 ribosome maturation factor RimM compare
SGL_RS13550 -2.3 -1.3 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS03430 -2.3 -5.6 DUF4335 domain-containing protein compare
SGL_RS03950 -2.3 -8.2 homocysteine biosynthesis protein compare
SGL_RS13510 -2.3 -6.6 transglycosylase domain-containing protein compare
SGL_RS12400 -2.3 -1.6 lysophospholipid acyltransferase family protein compare
SGL_RS13285 -2.3 -6.5 Sll0314/Alr1548 family TPR repeat-containing protein compare
SGL_RS18380 -2.3 -7.9 GTP-binding protein compare
SGL_RS10245 -2.3 -7.7 glycoside hydrolase family protein compare
SGL_RS15655 -2.3 -11.1 asparaginase compare
SGL_RS08495 -2.3 -7.3 DUF3370 domain-containing protein compare
SGL_RS15620 -2.2 -2.1 cobyric acid synthase CobQ compare
SGL_RS03185 -2.2 -2.1 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS19460 -2.2 -3.8 hypothetical protein compare
SGL_RS07665 -2.2 -3.6 ABC transporter ATP-binding protein compare
SGL_RS15920 -2.2 -7.5 GNAT family N-acetyltransferase compare
SGL_RS18325 -2.2 -6.2 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS15435 -2.2 -6.4 PD40 domain-containing protein compare
SGL_RS13535 -2.2 -2.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS15545 -2.1 -10.8 FAD-dependent oxidoreductase compare
SGL_RS06020 -2.1 -3.7 sugar ABC transporter permease compare


Specific Phenotypes

For 8 genes in this experiment

For photoheterotrophic D-Glucose in Synechocystis sp000284455 PCC 6803

For photoheterotrophic D-Glucose across organisms