Experiment set1S108 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media and 10 mM glucose= photoheterotrophic growth

Group: photoheterotrophic
Media: BG11C + D-Glucose (10 mM) + DCMU (20 uM)
Culturing: Synechocystis_PCC6803_ML3, flask, 100 rpm orbital shaking, growth chamber, continous light, at 30 (C), shaken=100 rpm
Growth: about 5.0 generations
By: Luis on 12/16/24
Media components: 17.6 mM Sodium nitrate, 0.2 mM Potassium phosphate dibasic, 0.3 mM Magnesium Sulfate Heptahydrate, 0.24 mM Calcium chloride dihydrate, 28.5 uM Citric Acid, 0.006 g/L Ferric ammonium citrate, 2.4 uM EDTA (disodium salt), 0.2 mM Sodium bicarbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)

Specific Phenotypes

For 8 genes in this experiment

For photoheterotrophic D-Glucose in Synechocystis sp000284455 PCC 6803

For photoheterotrophic D-Glucose across organisms

SEED Subsystems

Subsystem #Specific
Entner-Doudoroff Pathway 2
Glycogen metabolism 1
NAD and NADP cofactor biosynthesis global 1
Pentose phosphate pathway 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
NADP biosynthesis 1 1 1
NAD phosphorylation and transhydrogenation 2 2 1
cytosolic NADPH production (yeast) 5 3 2
pentose phosphate pathway (oxidative branch) I 3 3 1
NAD phosphorylation and dephosphorylation 3 2 1
glycogen biosynthesis I (from ADP-D-Glucose) 4 4 1
superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) 8 4 2
mitochondrial NADPH production (yeast) 5 2 1
NAD(P)/NADPH interconversion 6 3 1
formaldehyde oxidation I 6 3 1
L-lysine biosynthesis VI 7 7 1
pentose phosphate pathway 8 8 1
Entner-Doudoroff pathway I 9 7 1
L-lysine biosynthesis I 9 7 1
L-lysine biosynthesis II 9 6 1
starch biosynthesis 10 6 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 12 1
superpathway of glycolysis and the Entner-Doudoroff pathway 17 14 1
superpathway of glucose and xylose degradation 17 14 1
heterolactic fermentation 18 14 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 12 1
aspartate superpathway 25 19 1