Experiment set1S104 for Synechocystis sp000284455 PCC 6803

Compare to:

Na NO3 10 mM as N source, buffered with 20 mM TES pH8 but diluted to prevent light attenuation

200 most important genes:

  gene name fitness t score description  
SGL_RS03540 -6.9 -6.7 ABC transporter ATP-binding protein compare
SGL_RS12870 -5.5 -3.8 YqeG family HAD IIIA-type phosphatase compare
SGL_RS05390 -5.3 -3.7 Na(+)/H(+) antiporter subunit B compare
SGL_RS12335 -5.3 -3.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS06130 -5.3 -3.6 anti-sigma regulatory factor compare
SGL_RS05375 -5.0 -3.4 hypothetical protein compare
SGL_RS05370 -4.7 -2.3 Na+/H+ antiporter subunit E compare
SGL_RS13870 -4.5 -3.1 rRNA maturation RNase YbeY compare
SGL_RS03840 -4.3 -2.9 adenylyl-sulfate kinase compare
SGL_RS05385 -4.2 -2.9 DUF4040 domain-containing protein compare
SGL_RS15045 -4.2 -7.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS04490 -4.2 -2.9 2TM domain-containing protein compare
SGL_RS03520 -4.2 -4.8 ABC transporter permease compare
SGL_RS02665 -4.1 -2.8 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS05380 -4.1 -2.8 monovalent cation/H(+) antiporter subunit G compare
SGL_RS16100 -4.0 -4.7 heavy metal translocating P-type ATPase compare
SGL_RS13535 -4.0 -2.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS06430 -3.9 -2.7 glycosyltransferase family 2 protein compare
SGL_RS11510 -3.9 -3.8 dihydroneopterin aldolase compare
SGL_RS09820 -3.9 -3.9 ribosome maturation factor RimM compare
SGL_RS17650 -3.9 -2.7 hypothetical protein compare
SGL_RS14445 -3.8 -2.6 hypothetical protein compare
SGL_RS02515 -3.8 -5.9 M56 family metallopeptidase compare
SGL_RS03625 -3.8 -14.3 glycosyltransferase family 1 protein compare
SGL_RS11000 -3.7 -2.6 sulfate adenylyltransferase compare
SGL_RS15130 -3.7 -13.4 dTDP-glucose 4,6-dehydratase compare
SGL_RS05980 -3.6 -4.2 hypothetical protein compare
SGL_RS14920 -3.6 -2.5 cation:proton antiporter compare
SGL_RS13770 -3.6 -1.7 DUF3082 domain-containing protein compare
SGL_RS11135 -3.6 -2.4 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS15425 -3.6 -6.3 cobalamin biosynthesis protein CobW compare
SGL_RS08175 -3.5 -3.4 serine hydrolase compare
SGL_RS16880 -3.5 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS17305 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
SGL_RS12575 -3.4 -3.3 riboflavin synthase compare
SGL_RS17330 -3.4 -9.7 biosynthetic arginine decarboxylase compare
SGL_RS16950 -3.4 -8.7 phosphoketolase compare
SGL_RS03380 -3.4 -8.2 sulfite reductase, ferredoxin dependent compare
SGL_RS17470 -3.3 -3.2 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS16940 -3.3 -3.8 dephospho-CoA kinase compare
SGL_RS03775 -3.3 -3.9 membrane protein compare
SGL_RS03790 -3.3 -2.2 GTPase ObgE compare
SGL_RS12490 -3.3 -4.9 glutamate--cysteine ligase compare
SGL_RS07840 -3.2 -3.1 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS10775 -3.2 -7.9 DUF3326 domain-containing protein compare
SGL_RS03060 -3.2 -5.0 phosphoadenosine phosphosulfate reductase compare
SGL_RS15560 -3.2 -2.2 dethiobiotin synthase compare
SGL_RS17520 -3.1 -3.7 DUF3352 domain-containing protein compare
SGL_RS05440 -3.1 -2.1 ACP S-malonyltransferase compare
SGL_RS03550 -3.1 -17.3 CDP-glucose 4,6-dehydratase compare
SGL_RS06590 -3.1 -4.6 nitrate ABC transporter permease compare
SGL_RS13555 -3.1 -4.1 aldehyde oxygenase (deformylating) compare
SGL_RS14335 -3.1 -2.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS03590 -3.0 -11.3 ATP-grasp domain-containing protein compare
SGL_RS02145 -3.0 -9.6 metallophosphoesterase compare
SGL_RS03970 -3.0 -2.8 thiamine phosphate synthase compare
SGL_RS09395 -3.0 -2.0 aldo/keto reductase compare
SGL_RS07200 -2.9 -2.0 LCP family protein compare
SGL_RS12545 -2.9 -2.7 GTPase Era compare
SGL_RS08710 -2.9 -2.8 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS03365 -2.9 -4.5 Ycf66 family protein compare
SGL_RS06585 -2.9 -3.8 nitrate ABC transporter ATP-binding protein compare
SGL_RS02095 -2.9 -6.5 dTDP-4-dehydrorhamnose reductase compare
SGL_RS07605 -2.9 -2.7 HEAT repeat domain-containing protein compare
SGL_RS12030 -2.9 -3.3 extracellular solute-binding protein compare
SGL_RS16360 -2.9 -2.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS05560 -2.8 -1.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS17125 -2.8 -3.8 inositol monophosphatase family protein compare
SGL_RS12770 -2.8 -1.9 uroporphyrinogen-III C-methyltransferase compare
SGL_RS08275 -2.8 -1.9 tetratricopeptide repeat protein compare
SGL_RS06440 -2.8 -5.2 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS03585 -2.8 -13.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS09385 -2.8 -1.9 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS05435 -2.8 -1.9 heavy metal translocating P-type ATPase compare
SGL_RS09720 -2.7 -1.9 beta-ketoacyl-ACP synthase compare
SGL_RS08605 -2.7 -4.7 DUF3120 domain-containing protein compare
SGL_RS15530 -2.7 -1.8 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS16545 -2.7 -9.7 LdpA C-terminal domain-containing domain compare
SGL_RS02220 -2.7 -1.8 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS15620 -2.7 -1.8 cobyric acid synthase CobQ compare
SGL_RS08765 -2.7 -3.0 2-phosphosulfolactate phosphatase family protein compare
SGL_RS04720 -2.7 -1.8 iron uptake porin compare
SGL_RS14430 -2.6 -4.3 cobalt ECF transporter T component CbiQ compare
SGL_RS18215 -2.6 -6.0 pentapeptide repeat-containing protein compare
SGL_RS14930 -2.6 -7.5 type I methionyl aminopeptidase compare
SGL_RS14425 -2.6 -3.0 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS17685 -2.5 -10.6 ArsB/NhaD family transporter compare
SGL_RS06595 -2.5 -4.7 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS04660 -2.5 -4.1 phycobilisome rod-core linker polypeptide compare
SGL_RS14435 -2.5 -1.7 cobalt transporter CbiM compare
SGL_RS12985 -2.5 -3.3 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS18320 -2.5 -10.2 serine/threonine-protein kinase compare
SGL_RS12585 -2.5 -2.4 ABC transporter permease subunit compare
SGL_RS09845 -2.4 -5.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS14105 -2.4 -2.3 2-succinylbenzoate--CoA ligase compare
SGL_RS02580 -2.4 -3.2 DUF1818 family protein compare
SGL_RS12920 -2.4 -2.6 hypothetical protein compare
SGL_RS06675 -2.4 -4.4 ABC transporter ATP-binding protein compare
SGL_RS06020 -2.4 -4.1 sugar ABC transporter permease compare
SGL_RS03950 -2.4 -8.1 homocysteine biosynthesis protein compare
SGL_RS05880 -2.4 -3.2 sugar ABC transporter substrate-binding protein compare
SGL_RS12400 -2.3 -1.6 lysophospholipid acyltransferase family protein compare
SGL_RS17405 -2.3 -7.6 L-2-hydroxyglutarate oxidase compare
SGL_RS05470 -2.3 -3.7 dihydropteroate synthase compare
SGL_RS15865 -2.3 -3.7 septum site-determining protein MinD compare
SGL_RS04510 -2.3 -6.4 DUF561 domain-containing protein compare
SGL_RS10155 -2.3 -4.0 hypothetical protein compare
SGL_RS13055 -2.3 -2.1 protein translocase subunit SecF compare
SGL_RS10305 -2.3 -5.5 PIN/TRAM domain-containing protein compare
SGL_RS03250 -2.2 -3.6 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS18365 -2.2 -10.2 glycosyltransferase family 9 protein compare
SGL_RS03545 -2.1 -5.3 glucose-1-phosphate cytidylyltransferase compare
SGL_RS10320 -2.1 -1.9 ribosome biogenesis GTPase Der compare
SGL_RS18300 -2.1 -3.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS08790 -2.1 -2.3 carbohydrate ABC transporter permease compare
SGL_RS13465 -2.1 -9.9 class II fumarate hydratase compare
SGL_RS07870 -2.0 -3.0 Ycf51 family protein compare
SGL_RS14045 -2.0 -4.5 hypothetical protein compare
SGL_RS15700 -2.0 -9.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS16735 -2.0 -1.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS13495 -2.0 -8.0 AarF/ABC1/UbiB kinase family protein compare
SGL_RS03560 -2.0 -7.7 class I SAM-dependent methyltransferase compare
SGL_RS14505 -1.9 -5.5 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS16860 -1.9 -6.3 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS03185 -1.9 -2.2 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS04525 -1.9 -2.5 photosynthesis system II assembly factor Ycf48 compare
SGL_RS05210 -1.9 -6.4 SLBB domain-containing protein compare
SGL_RS08115 -1.9 -3.7 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS13560 -1.9 -11.7 glucose-1-phosphate thymidylyltransferase compare
SGL_RS12235 -1.9 -2.4 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS00825 -1.9 -6.1 hypothetical protein compare
SGL_RS06755 -1.8 -7.5 bacterioferritin-associated ferredoxin compare
SGL_RS11835 -1.8 -2.4 transcription antitermination factor NusB compare
SGL_RS01900 -1.8 -5.9 GDP-L-fucose synthase compare
SGL_RS02375 -1.8 -7.5 DUF3086 domain-containing protein compare
SGL_RS06355 -1.8 -2.0 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS04775 -1.8 -4.4 alpha/beta hydrolase compare
SGL_RS03555 -1.8 -9.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS03425 -1.8 -1.6 precorrin-3B C(17)-methyltransferase compare
SGL_RS11675 -1.8 -4.0 chromophore lyase CpcT/CpeT compare
SGL_RS15870 -1.8 -5.9 septum site-determining protein MinC compare
SGL_RS12910 -1.7 -6.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
SGL_RS10480 -1.7 -9.2 metallophosphoesterase family protein compare
SGL_RS14540 -1.7 -2.2 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS02260 -1.7 -1.9 HEAT repeat domain-containing protein compare
SGL_RS03675 -1.7 -3.5 hypothetical protein compare
SGL_RS11985 -1.7 -1.9 LysR family transcriptional regulator compare
SGL_RS07305 -1.7 -6.0 N-acetylmuramic acid 6-phosphate etherase compare
SGL_RS02850 -1.6 -4.2 uracil phosphoribosyltransferase compare
SGL_RS12925 -1.6 -4.3 AAA family ATPase compare
SGL_RS05320 -1.6 -7.0 PBP1A family penicillin-binding protein compare
SGL_RS13195 -1.6 -4.5 Ig-like domain-containing protein compare
SGL_RS18170 -1.6 -3.0 PspA/IM30 family protein compare
SGL_RS05240 -1.6 -3.2 phycobilisome linker polypeptide compare
SGL_RS14285 -1.6 -3.0 hypothetical protein compare
SGL_RS12755 -1.6 -8.3 IMS domain-containing protein compare
SGL_RS04230 -1.6 -3.2 exonuclease subunit SbcC compare
SGL_RS00830 -1.6 -3.1 hypothetical protein compare
SGL_RS13855 -1.6 -3.9 hypothetical protein compare
SGL_RS08495 -1.6 -6.2 DUF3370 domain-containing protein compare
SGL_RS13510 -1.6 -5.9 transglycosylase domain-containing protein compare
SGL_RS17270 -1.5 -2.5 hypothetical protein compare
SGL_RS14025 -1.5 -8.4 gamma-glutamyl-phosphate reductase compare
SGL_RS13910 -1.5 -2.9 phasin family protein compare
SGL_RS15655 -1.5 -11.1 asparaginase compare
SGL_RS13370 -1.5 -2.3 exonuclease SbcCD subunit D compare
SGL_RS03450 -1.5 -3.4 permease compare
SGL_RS16705 -1.5 -4.1 diadenylate cyclase CdaA compare
SGL_RS06640 -1.5 -2.2 DUF4168 domain-containing protein compare
SGL_RS05465 -1.5 -2.3 hypothetical protein compare
SGL_RS13550 -1.4 -1.5 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS04735 -1.4 -2.4 hypothetical protein compare
SGL_RS14860 -1.4 -2.8 8-amino-7-oxononanoate synthase compare
SGL_RS04390 -1.4 -2.6 DUF433 domain-containing protein compare
SGL_RS09905 -1.4 -3.3 biotin/lipoate A/B protein ligase family protein compare
SGL_RS13900 -1.4 -8.9 AI-2E family transporter compare
SGL_RS11025 -1.4 -5.5 oxidoreductase compare
SGL_RS03275 -1.4 -7.2 UDP-glucose/GDP-mannose dehydrogenase family protein compare
SGL_RS05500 -1.4 -8.3 ribonuclease R compare
SGL_RS13905 -1.4 -4.7 hypothetical protein compare
SGL_RS03430 -1.4 -5.2 DUF4335 domain-containing protein compare
SGL_RS10065 -1.4 -7.8 four-carbon acid sugar kinase family protein compare
SGL_RS07105 -1.4 -4.4 precorrin-6Y C5,15-methyltransferase subunit CbiT compare
SGL_RS00195 -1.4 -8.7 glycosyltransferase family 2 protein compare
SGL_RS16670 -1.3 -9.1 DUF5942 domain-containing protein compare
SGL_RS05235 -1.3 -3.1 phycobilisome linker polypeptide compare
SGL_RS16770 -1.3 -5.0 LptF/LptG family permease compare
SGL_RS02460 -1.3 -3.0 phosphate signaling complex protein PhoU compare
SGL_RS09890 -1.3 -4.2 DUF3007 family protein compare
SGL_RS13490 -1.3 -4.9 aspartate aminotransferase compare
SGL_RS11945 -1.3 -6.1 sirohydrochlorin chelatase compare
SGL_RS06775 -1.3 -3.1 type II toxin-antitoxin system PemK/MazF family toxin compare
SGL_RS01905 -1.3 -7.1 GDP-mannose 4,6-dehydratase compare
SGL_RS09160 -1.3 -2.3 thioredoxin family protein compare
SGL_RS15305 -1.3 -3.1 ribonuclease HI compare
SGL_RS18180 -1.3 -4.4 ABC transporter permease compare
SGL_RS19585 -1.3 -3.0 hypothetical protein compare
SGL_RS11325 -1.3 -3.6 pitrilysin family protein compare
SGL_RS02475 -1.2 -1.6 YlxR family protein compare
SGL_RS03085 -1.2 -2.3 DUF2862 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in nitrogen source experiments

For nitrogen source Sodium nitrate across organisms