Experiment set1IT094 for Dyella japonica UNC79MFTsu3.2

Compare to:

D-Cellobiose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS12070 -6.8 -8.0 anthranilate phosphoribosyltransferase compare
ABZR86_RS02230 -6.7 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS10215 -6.6 -6.4 inositol monophosphatase family protein compare
ABZR86_RS15980 -6.6 -4.6 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS08010 -6.4 -6.2 phosphoribosylanthranilate isomerase compare
ABZR86_RS06720 -6.1 -5.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS06710 -6.1 -5.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS15960 -6.0 -10.1 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS10425 -5.7 -3.9 pyrroline-5-carboxylate reductase compare
ABZR86_RS10475 -5.7 -7.8 shikimate kinase compare
ABZR86_RS06725 -5.7 -6.8 histidinol-phosphate transaminase compare
ABZR86_RS13515 -5.6 -3.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS11570 -5.5 -12.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS09635 -5.5 -7.2 phosphoglycerate dehydrogenase compare
ABZR86_RS14985 -5.5 -11.1 shikimate dehydrogenase compare
ABZR86_RS15950 -5.5 -7.5 3-isopropylmalate dehydrogenase compare
ABZR86_RS19560 -5.5 -7.5 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS15975 -5.4 -12.6 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS06715 -5.4 -8.9 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS05875 -5.3 -6.2 cysteine synthase A compare
ABZR86_RS15965 -5.2 -12.2 branched-chain amino acid transaminase compare
ABZR86_RS14100 -5.2 -7.1 DNA adenine methylase compare
ABZR86_RS06705 -5.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS15935 -5.1 -14.8 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS08730 -5.0 -10.9 N-acetylornithine carbamoyltransferase compare
ABZR86_RS08705 -5.0 -11.2 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS14690 -5.0 -7.7 phosphogluconate dehydratase compare
ABZR86_RS19025 -5.0 -4.8 homoserine O-succinyltransferase compare
ABZR86_RS02815 -4.9 -17.2 asparagine synthase B compare
ABZR86_RS17085 -4.9 -9.4 type II 3-dehydroquinate dehydratase compare
ABZR86_RS08000 -4.9 -15.5 tryptophan synthase subunit beta compare
ABZR86_RS08695 -4.9 -11.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS16800 -4.8 -15.5 FAD-dependent oxidoreductase compare
ABZR86_RS12180 -4.8 -18.3 anthranilate synthase component I compare
ABZR86_RS13055 -4.8 -11.6 glucokinase compare
ABZR86_RS08250 -4.8 -3.3 phosphate signaling complex protein PhoU compare
ABZR86_RS08715 -4.7 -13.0 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS15945 -4.7 -4.8 dihydroxy-acid dehydratase compare
ABZR86_RS02225 -4.6 -8.5 prephenate dehydratase compare
ABZR86_RS06775 -4.6 -17.1 amidophosphoribosyltransferase compare
ABZR86_RS08710 -4.6 -7.2 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS10715 -4.6 -13.9 serine hydroxymethyltransferase compare
ABZR86_RS05905 -4.5 -7.5 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS02220 -4.5 -17.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS06700 -4.5 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS16795 -4.5 -20.1 glutamate synthase large subunit compare
ABZR86_RS06730 -4.5 -8.9 histidinol dehydrogenase compare
ABZR86_RS15940 -4.4 -11.8 ketol-acid reductoisomerase compare
ABZR86_RS18675 -4.4 -6.0 phosphoglycerate kinase compare
ABZR86_RS11555 -4.4 -10.7 phosphoenolpyruvate carboxylase compare
ABZR86_RS12215 -4.3 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS07995 -4.3 -8.1 tryptophan synthase subunit alpha compare
ABZR86_RS15970 -4.3 -9.0 2-isopropylmalate synthase compare
ABZR86_RS19860 -4.3 -10.6 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS11825 -4.2 -2.9 citrate synthase compare
ABZR86_RS08040 -4.2 -6.9 chorismate synthase compare
ABZR86_RS12065 -4.2 -6.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS19800 -4.1 -12.3 RNase adapter RapZ compare
ABZR86_RS20980 -4.1 -3.6 hypothetical protein compare
ABZR86_RS00830 -4.1 -13.4 glucose-6-phosphate isomerase compare
ABZR86_RS08680 -4.1 -11.3 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS08700 -4.0 -6.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS12280 -4.0 -2.7 dihydrolipoyl dehydrogenase compare
ABZR86_RS08340 -4.0 -7.0 adenylosuccinate synthase compare
ABZR86_RS06000 -4.0 -7.5 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS15315 -3.8 -10.3 phenylalanine 4-monooxygenase compare
ABZR86_RS18615 -3.8 -2.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS15460 -3.7 -2.5 type I glutamate--ammonia ligase compare
ABZR86_RS06735 -3.7 -5.1 ATP phosphoribosyltransferase compare
ABZR86_RS15955 -3.7 -7.1 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS05995 -3.7 -15.9 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS19030 -3.7 -7.6 cystathionine gamma-synthase compare
ABZR86_RS14700 -3.7 -6.1 glucose-6-phosphate dehydrogenase compare
ABZR86_RS06630 -3.6 -3.5 phosphopyruvate hydratase compare
ABZR86_RS21335 -3.6 -1.4 response regulator transcription factor compare
ABZR86_RS05900 -3.6 -11.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS10480 -3.5 -4.1 3-dehydroquinate synthase compare
ABZR86_RS18780 -3.5 -3.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS13850 -3.5 -5.9 phosphoribosylamine--glycine ligase compare
ABZR86_RS21020 -3.4 -8.7 ATP-binding protein compare
ABZR86_RS12200 -3.4 -6.9 ribulose-phosphate 3-epimerase compare
ABZR86_RS05890 -3.4 -15.4 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS12605 -3.4 -4.0 thioredoxin TrxA compare
ABZR86_RS19235 -3.4 -2.3 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS12005 -3.4 -2.2 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS18655 -3.3 -8.2 transketolase compare
ABZR86_RS05885 -3.3 -9.0 LysR substrate-binding domain-containing protein compare
ABZR86_RS07585 -3.3 -10.8 homocysteine S-methyltransferase family protein compare
ABZR86_RS07590 -3.2 -15.2 methionine synthase compare
ABZR86_RS02885 -3.1 -12.5 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS21575 -3.1 -8.8 [protein-PII] uridylyltransferase compare
ABZR86_RS20150 -3.1 -2.3 PilZ domain-containing protein compare
ABZR86_RS18450 -3.1 -2.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS06580 -3.0 -4.4 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS08685 -3.0 -5.1 glutamate 5-kinase compare
ABZR86_RS16045 -2.9 -8.6 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS19865 -2.9 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS06260 -2.8 -3.9 MBL fold metallo-hydrolase compare
ABZR86_RS12595 -2.8 -1.6 cell division ATP-binding protein FtsE compare
ABZR86_RS05895 -2.8 -11.0 phosphoadenylyl-sulfate reductase compare
ABZR86_RS12435 -2.8 -10.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS02895 -2.7 -7.7 ABC transporter ATP-binding protein compare
ABZR86_RS02880 -2.7 -9.4 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS08905 -2.7 -8.8 carbonate dehydratase compare
ABZR86_RS12780 -2.7 -4.8 pteridine reductase compare
ABZR86_RS13370 -2.6 -11.5 twin-arginine translocase subunit TatC compare
ABZR86_RS10710 -2.6 -2.0 transcriptional regulator NrdR compare
ABZR86_RS09885 -2.6 -1.7 trypsin-like peptidase domain-containing protein compare
ABZR86_RS02890 -2.5 -6.9 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS08305 -2.5 -13.5 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS12885 -2.4 -1.7 magnesium-translocating P-type ATPase compare
ABZR86_RS06590 -2.4 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS18875 -2.4 -6.6 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS12790 -2.4 -3.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS02305 -2.3 -1.6 hypothetical protein compare
ABZR86_RS19910 -2.2 -2.1 inorganic phosphate transporter compare
ABZR86_RS15985 -2.2 -6.5 homoserine dehydrogenase compare
ABZR86_RS10945 -2.1 -7.7 trehalose-phosphatase compare
ABZR86_RS20700 -2.1 -1.6 transcriptional repressor AgaR compare
ABZR86_RS05550 -2.1 -3.8 lipopolysaccharide assembly protein LapB compare
ABZR86_RS08465 -2.1 -2.1 hypothetical protein compare
ABZR86_RS03105 -2.0 -1.8 response regulator transcription factor compare
ABZR86_RS13380 -2.0 -2.0 Sec-independent protein translocase subunit TatA compare
ABZR86_RS15020 -2.0 -2.1 DUF484 family protein compare
ABZR86_RS09505 -2.0 -8.0 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR86_RS18960 -1.9 -6.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS20235 -1.9 -1.3 flagellar biosynthesis protein FliQ compare
ABZR86_RS04495 -1.9 -1.2 hypothetical protein compare
ABZR86_RS06030 -1.9 -1.4 transcription termination factor NusA compare
ABZR86_RS15515 -1.8 -5.8 nitrogen regulation protein NR(I) compare
ABZR86_RS05820 -1.8 -3.5 GntR family transcriptional regulator compare
ABZR86_RS18355 -1.8 -1.4 PepSY domain-containing protein compare
ABZR86_RS13865 -1.8 -1.2 DNA topoisomerase I compare
ABZR86_RS20775 -1.8 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS07660 -1.8 -5.1 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS04835 -1.7 -3.8 hypothetical protein compare
ABZR86_RS09485 -1.7 -1.3 SUF system Fe-S cluster assembly regulator compare
ABZR86_RS12545 -1.7 -9.5 transaldolase compare
ABZR86_RS18880 -1.7 -6.3 glycine cleavage system protein GcvH compare
ABZR86_RS05880 -1.6 -7.3 siroheme synthase CysG compare
ABZR86_RS18640 -1.6 -7.0 class I fructose-bisphosphate aldolase compare
ABZR86_RS09145 -1.6 -3.3 hypothetical protein compare
ABZR86_RS11995 -1.6 -6.3 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS02450 -1.6 -1.9 hypothetical protein compare
ABZR86_RS06355 -1.5 -2.4 folate-binding protein YgfZ compare
ABZR86_RS07180 -1.5 -4.3 RNA polymerase sigma factor RpoE compare
ABZR86_RS02285 -1.5 -6.1 DUF1643 domain-containing protein compare
ABZR86_RS06740 -1.5 -1.8 YerC/YecD family TrpR-related protein compare
ABZR86_RS21480 -1.5 -4.3 arginase family protein compare
ABZR86_RS12295 -1.4 -1.1 DUF2884 family protein compare
ABZR86_RS10355 -1.4 -1.1 chemotaxis protein CheW compare
ABZR86_RS10205 -1.4 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS17180 -1.4 -5.8 glycosyltransferase compare
ABZR86_RS09845 -1.4 -8.6 DUF1631 domain-containing protein compare
ABZR86_RS15990 -1.4 -1.9 hypothetical protein compare
ABZR86_RS11845 -1.4 -7.1 RidA family protein compare
ABZR86_RS01685 -1.4 -4.4 Gfo/Idh/MocA family oxidoreductase compare
ABZR86_RS01440 -1.4 -2.1 hypothetical protein compare
ABZR86_RS05860 -1.4 -2.2 adenylosuccinate lyase compare
ABZR86_RS18465 -1.4 -3.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS17150 -1.4 -7.3 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS22230 -1.3 -3.4 chemotaxis protein CheA compare
ABZR86_RS14705 -1.3 -4.6 GntR family transcriptional regulator compare
ABZR86_RS09630 -1.3 -5.2 FAD-binding oxidoreductase compare
ABZR86_RS06190 -1.3 -1.6 YceD family protein compare
ABZR86_RS00570 -1.3 -4.1 acetoacetyl-CoA reductase compare
ABZR86_RS02185 -1.2 -5.3 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS09430 -1.2 -2.6 non-heme iron oxygenase ferredoxin subunit compare
ABZR86_RS08015 -1.2 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS10840 -1.2 -2.6 Holliday junction branch migration protein RuvA compare
ABZR86_RS20820 -1.2 -1.1 CsbD family protein compare
ABZR86_RS11880 -1.1 -3.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS06275 -1.1 -3.4 DUF6165 family protein compare
ABZR86_RS15330 -1.1 -5.1 TetR/AcrR family transcriptional regulator compare
ABZR86_RS00800 -1.1 -1.3 tRNA-Glu compare
ABZR86_RS09660 -1.1 -3.2 MerR family transcriptional regulator compare
ABZR86_RS00530 -1.1 -3.2 cold-shock protein compare
ABZR86_RS05010 -1.1 -1.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR86_RS02545 -1.1 -2.5 Ref family recombination enhancement nuclease compare
ABZR86_RS19905 -1.1 -3.4 DUF47 domain-containing protein compare
ABZR86_RS18830 -1.1 -3.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS18430 -1.0 -1.6 type II toxin-antitoxin system HigA family antitoxin compare
ABZR86_RS17095 -1.0 -4.2 protein-disulfide reductase DsbD compare
ABZR86_RS04375 -1.0 -1.1 GNAT family N-acetyltransferase compare
ABZR86_RS16345 -1.0 -7.2 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS15925 -1.0 -6.6 threonine ammonia-lyase, biosynthetic compare
ABZR86_RS20280 -1.0 -2.1 chemotaxis protein CheA compare
ABZR86_RS00685 -1.0 -1.5 carbon storage regulator CsrA compare
ABZR86_RS19795 -1.0 -3.5 PTS sugar transporter subunit IIA compare
ABZR86_RS08775 -1.0 -2.5 HAD-IA family hydrolase compare
ABZR86_RS00890 -1.0 -0.9 enoyl-CoA hydratase/isomerase family protein compare
ABZR86_RS19805 -1.0 -2.8 HPr(Ser) kinase/phosphatase compare
ABZR86_RS00285 -1.0 -1.7 hypothetical protein compare
ABZR86_RS12410 -1.0 -1.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS18775 -1.0 -1.2 nucleotidyltransferase family protein compare
ABZR86_RS05700 -1.0 -2.2 SsrA-binding protein SmpB compare
ABZR86_RS22250 -0.9 -4.2 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
ABZR86_RS09015 -0.9 -2.0 anti-sigma factor compare
ABZR86_RS20190 -0.9 -1.5 flagellar export protein FliJ compare
ABZR86_RS00480 -0.9 -2.5 glutathione peroxidase compare


Specific Phenotypes

None in this experiment

For Dyella japonica UNC79MFTsu3.2 in carbon source experiments

For carbon source D-Cellobiose across organisms