Experiment set1IT093 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with copper (II) chloride dihydrate 2.5 mM

200 most important genes:

  gene name fitness t score description  
AO353_06155 -4.4 -8.4 copper-transporting ATPase compare
AO353_19370 -4.3 -10.4 transcriptional regulator conserved
AO353_06160 -4.3 -5.1 transcriptional regulator compare
AO353_00355 -4.1 -2.8 transcriptional regulator compare
AO353_22205 -3.8 -8.9 copper resistance protein CopB conserved
AO353_04190 -3.8 -2.6 glycerol-3-phosphate dehydrogenase compare
AO353_22210 -3.7 -15.4 copper oxidase conserved
AO353_08420 -3.7 -11.3 ATPase P conserved
AO353_22800 -3.6 -4.3 sulfite reductase compare
AO353_09890 -3.6 -5.0 phosphate ABC transporter ATP-binding protein compare
AO353_19375 -3.4 -5.7 histidine kinase compare
AO353_06415 -3.4 -5.1 hypothetical protein compare
AO353_04535 -3.3 -9.5 aminopeptidase compare
AO353_15900 -3.3 -3.2 GTP-binding protein compare
AO353_12090 -3.2 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07140 -3.0 -17.2 peptidase M23 compare
AO353_03710 -3.0 -3.6 formyltetrahydrofolate deformylase compare
AO353_20200 -2.9 -4.0 peptidylprolyl isomerase compare
AO353_05110 -2.8 -10.6 histidinol dehydrogenase compare
AO353_12950 -2.8 -8.9 polymerase compare
AO353_12350 -2.8 -4.2 preprotein translocase compare
AO353_12940 -2.7 -7.2 glycosyl transferase compare
AO353_05225 -2.7 -14.4 hypothetical protein compare
AO353_05240 -2.6 -3.2 rod shape-determining protein MreD compare
AO353_12075 -2.6 -8.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12650 -2.6 -1.6 hypothetical protein compare
AO353_04835 -2.6 -11.6 fusaric acid resistance protein compare
AO353_18540 -2.6 -3.9 pseudouridine synthase compare
AO353_04035 -2.5 -5.1 exclusion suppressor FxsA compare
AO353_09905 -2.5 -9.4 phosphate-binding protein compare
AO353_15170 -2.5 -3.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_10320 -2.5 -2.9 hypothetical protein compare
AO353_13100 -2.5 -2.4 GTPase RsgA compare
AO353_03815 -2.4 -2.9 heme utilization protein compare
AO353_00430 -2.4 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_23405 -2.4 -3.2 hypothetical protein compare
AO353_28110 -2.4 -6.1 TetR family transcriptional regulator compare
AO353_14370 -2.4 -6.5 glucose-6-phosphate isomerase compare
AO353_02440 -2.4 -11.3 peptidase S41 compare
AO353_07355 -2.3 -5.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_17290 -2.3 -6.3 multidrug transporter compare
AO353_06460 -2.3 -7.7 hypothetical protein compare
AO353_10710 -2.3 -5.4 tryptophan synthase subunit beta compare
AO353_17295 -2.3 -15.6 multidrug transporter compare
AO353_19250 -2.3 -3.0 molybdenum cofactor guanylyltransferase compare
AO353_05690 -2.3 -4.1 SsrA-binding protein compare
AO353_07315 -2.3 -2.7 rRNA methyltransferase compare
AO353_08265 -2.3 -6.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_19365 -2.3 -9.3 thiol:disulfide interchange protein compare
AO353_01410 -2.3 -3.7 ribonuclease E compare
AO353_12070 -2.2 -8.5 imidazoleglycerol-phosphate dehydratase compare
AO353_12115 -2.2 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_18505 -2.2 -1.7 translation initiation factor 2 compare
AO353_04840 -2.2 -9.9 RND transporter compare
AO353_09720 -2.2 -1.9 hypothetical protein compare
AO353_20800 -2.1 -1.2 hypothetical protein compare
AO353_12085 -2.1 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12420 -2.1 -3.7 predicted FeS cluster maintenance protein (from data) compare
AO353_14150 -2.1 -2.4 peptidylprolyl isomerase compare
AO353_29000 -2.1 -3.1 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_05625 -2.1 -1.9 transcription elongation factor GreA compare
AO353_00825 -2.0 -4.1 porin compare
AO353_27650 -2.0 -4.8 cell division protein FtsK compare
AO353_04825 -2.0 -6.1 hypothetical protein compare
AO353_03580 -2.0 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_17300 -2.0 -6.2 antibiotic transporter compare
AO353_15905 -2.0 -6.6 outer membrane protein assembly factor BamB compare
AO353_04830 -1.9 -5.4 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_16890 -1.9 -7.1 virulence factor family protein compare
AO353_06045 -1.9 -7.2 exodeoxyribonuclease V subunit beta compare
AO353_11730 -1.9 -8.5 glutamate--cysteine ligase compare
AO353_07325 -1.9 -2.2 diadenosine tetraphosphatase compare
AO353_01995 -1.9 -12.0 hypothetical protein compare
AO353_06455 -1.9 -3.1 D-alanyl-D-alanine carboxypeptidase compare
AO353_02010 -1.9 -6.6 glycosyl transferase family 1 compare
AO353_16495 -1.9 -5.6 zinc metallopeptidase RseP compare
AO353_06050 -1.9 -6.3 exodeoxyribonuclease V subunit gamma compare
AO353_13140 -1.9 -5.7 tRNA dimethylallyltransferase compare
AO353_08165 -1.9 -2.8 pyrroline-5-carboxylate reductase compare
AO353_12880 -1.8 -1.8 ADP-heptose--LPS heptosyltransferase compare
AO353_14220 -1.8 -2.0 ribosomal large subunit pseudouridine synthase D compare
AO353_27435 -1.8 -1.9 hypothetical protein compare
AO353_11750 -1.8 -2.6 ATPase compare
AO353_03585 -1.8 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_20095 -1.8 -5.0 histidine kinase compare
AO353_09900 -1.8 -9.5 phosphate ABC transporter permease compare
AO353_06495 -1.8 -4.9 gamma-glutamyl phosphate reductase compare
AO353_06040 -1.8 -3.7 exodeoxyribonuclease V subunit alpha compare
AO353_01985 -1.8 -8.6 hypothetical protein compare
AO353_07210 -1.7 -4.6 indole-3-glycerol-phosphate synthase compare
AO353_04180 -1.7 -7.8 glycerol kinase compare
AO353_08170 -1.7 -4.3 hypothetical protein compare
AO353_20785 -1.7 -4.9 carbon storage regulator CsrA compare
AO353_02015 -1.7 -7.0 acetyltransferase compare
AO353_10065 -1.7 -7.1 hypothetical protein compare
AO353_10705 -1.7 -3.9 tryptophan synthase subunit alpha compare
AO353_15460 -1.7 -5.6 cytochrome o ubiquinol oxidase subunit III compare
AO353_01970 -1.7 -9.1 hypothetical protein compare
AO353_07155 -1.7 -6.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_17970 -1.7 -11.3 hypothetical protein compare
AO353_09240 -1.7 -3.7 acetylglutamate kinase compare
AO353_01975 -1.7 -7.2 glycosyl transferase compare
AO353_02885 -1.7 -2.9 flagellar biosynthesis protein FlgN compare
AO353_12345 -1.7 -2.5 twin-arginine protein translocation system subunit TatC compare
AO353_03545 -1.7 -7.2 hypothetical protein compare
AO353_23955 -1.7 -4.0 RND transporter compare
AO353_12540 -1.6 -2.9 hypothetical protein compare
AO353_02020 -1.6 -4.7 hypothetical protein compare
AO353_10495 -1.6 -2.9 serine hydroxymethyltransferase compare
AO353_21400 -1.6 -2.5 conjugal transfer protein TraR compare
AO353_15455 -1.6 -10.5 cytochrome o ubiquinol oxidase subunit I compare
AO353_02970 -1.6 -2.9 carbon storage regulator compare
AO353_04175 -1.6 -4.5 glycerol uptake facilitator GlpF compare
AO353_04445 -1.6 -3.9 GntR family transcriptional regulator compare
AO353_13640 -1.6 -3.8 histidine kinase compare
AO353_12130 -1.6 -4.4 preprotein translocase subunit SecB compare
AO353_26055 -1.5 -2.2 hypothetical protein compare
AO353_26945 -1.5 -2.0 transcriptional regulator compare
AO353_01990 -1.5 -6.0 UDP-N-acetylglucosamine 2-epimerase compare
AO353_02025 -1.5 -8.3 mannose-1-phosphate guanyltransferase compare
AO353_00890 -1.5 -4.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_20665 -1.5 -7.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13080 -1.5 -6.0 thiosulfate sulfurtransferase conserved
AO353_07215 -1.5 -5.4 anthranilate phosphoribosyltransferase compare
AO353_06820 -1.5 -4.1 hypothetical protein compare
AO353_20810 -1.5 -2.3 hypothetical protein compare
AO353_02250 -1.5 -3.0 chorismate synthase compare
AO353_06850 -1.5 -3.7 MFS transporter compare
AO353_05730 -1.5 -4.2 hypothetical protein compare
AO353_18305 -1.4 -3.9 RNA helicase compare
AO353_08110 -1.4 -5.1 glutathione synthetase compare
AO353_16940 -1.4 -5.0 deoxycytidine triphosphate deaminase compare
AO353_10455 -1.4 -1.9 tRNA modification GTPase MnmE compare
AO353_08425 -1.4 -4.4 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO353_15470 -1.4 -8.8 protoheme IX farnesyltransferase compare
AO353_22215 -1.4 -1.9 hypothetical protein compare
AO353_27420 -1.4 -3.2 DNA-binding protein compare
AO353_08680 -1.4 -8.8 porin conserved
AO353_14990 -1.4 -2.3 hypothetical protein compare
AO353_27535 -1.4 -2.2 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_12310 -1.4 -7.1 glucan biosynthesis protein G compare
AO353_05075 -1.4 -7.3 adenylylsulfate kinase compare
AO353_15465 -1.4 -4.9 cytochrome C oxidase compare
AO353_04365 -1.4 -4.1 recombinase XerD compare
AO353_09235 -1.4 -6.0 phosphoglucomutase compare
AO353_26830 -1.4 -3.3 histidine kinase compare
AO353_02660 -1.3 -3.0 peptidase P60 compare
AO353_02690 -1.3 -6.8 dehydrogenase compare
AO353_12935 -1.3 -2.5 glycosyltransferase compare
AO353_08470 -1.3 -3.2 RNA pyrophosphohydrolase compare
AO353_13225 -1.3 -2.4 50S ribosomal protein L9 compare
AO353_14210 -1.3 -4.5 hypothetical protein compare
AO353_10780 -1.3 -1.7 DNA-binding protein compare
AO353_10930 -1.3 -5.5 DNA polymerase I compare
AO353_09040 -1.3 -1.4 diaminopimelate epimerase compare
AO353_16805 -1.3 -4.7 recombinase RecA compare
AO353_14740 -1.3 -3.1 GTP-binding protein compare
AO353_01485 -1.2 -4.2 ABC transporter compare
AO353_09860 -1.2 -6.2 histidine kinase compare
AO353_21640 -1.2 -1.9 cobalt transporter compare
AO353_27130 -1.2 -1.7 hypothetical protein compare
AO353_05130 -1.2 -1.4 anti-anti-sigma factor compare
AO353_28815 -1.2 -1.4 hypothetical protein compare
AO353_03515 -1.2 -1.4 cold-shock protein compare
AO353_03420 -1.2 -3.6 phosphogluconate dehydratase compare
AO353_12930 -1.2 -2.8 GlcNAc-PI de-N-acetylase compare
AO353_17035 -1.2 -2.7 hypothetical protein compare
AO353_07460 -1.2 -1.9 DNA-binding protein compare
AO353_11850 -1.2 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_05140 -1.2 -5.7 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_10440 -1.2 -4.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_08620 -1.2 -1.7 hypothetical protein compare
AO353_03615 -1.2 -2.7 cold-shock protein compare
AO353_17640 -1.2 -1.6 serine peptidase compare
AO353_06285 -1.2 -3.3 ABC transporter substrate-binding protein compare
AO353_14420 -1.2 -3.2 molecular chaperone DnaK compare
AO353_25550 -1.2 -4.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_13610 -1.2 -3.2 precorrin isomerase compare
AO353_09315 -1.1 -4.6 LysR family transcriptional regulator compare
AO353_08350 -1.1 -4.9 hypothetical protein compare
AO353_09320 -1.1 -5.9 ATP-dependent DNA helicase RecG compare
AO353_04565 -1.1 -4.2 nucleoid-associated protein compare
AO353_05115 -1.1 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_09395 -1.1 -2.4 type VI secretion protein compare
AO353_00460 -1.1 -2.3 TetR family transcriptional regulator compare
AO353_25335 -1.1 -1.8 malonate decarboxylase acyl carrier protein compare
AO353_07220 -1.1 -3.9 anthranilate synthase compare
AO353_17880 -1.1 -3.2 hypothetical protein compare
AO353_11945 -1.1 -0.9 4-oxalocrotonate tautomerase compare
AO353_21935 -1.1 -1.9 nitrite reductase compare
AO353_19280 -1.1 -1.1 hypothetical protein compare
AO353_09915 -1.1 -3.5 long-chain acyl-CoA thioester hydrolase compare
AO353_02300 -1.1 -1.1 MarR family transcriptional regulator compare
AO353_16415 -1.1 -6.1 beta-(1-3)-glucosyl transferase compare
AO353_00650 -1.1 -2.0 cytochrome biogenesis protein compare
AO353_06725 -1.1 -1.2 hypothetical protein compare
AO353_17175 -1.1 -2.0 beta-ketoadipyl CoA thiolase compare
AO353_17100 -1.1 -2.1 hypothetical protein compare
AO353_12315 -1.1 -7.0 glucosyltransferase MdoH compare
AO353_08245 -1.1 -2.0 cell division ATP-binding protein FtsE compare


Specific Phenotypes

For 10 genes in this experiment

For stress copper (II) chloride dihydrate in Pseudomonas fluorescens FW300-N2E3

For stress copper (II) chloride dihydrate across organisms