Experiment set1IT093 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Dimethyl Sulfoxide 5 vol%

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS19465 +0.8 4.1 protein tyrosine phosphatase compare
CA265_RS18950 +0.8 4.8 transcriptional regulator compare
CA265_RS20650 +0.8 1.3 hypothetical protein compare
CA265_RS11920 +0.8 1.5 histone H1 compare
CA265_RS18495 +0.7 1.7 hypothetical protein compare
CA265_RS21320 +0.7 1.7 hypothetical protein compare
CA265_RS10615 +0.7 3.3 diacylglycerol kinase compare
CA265_RS11030 +0.7 1.4 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS23265 +0.6 1.9 iron-binding protein compare
CA265_RS15815 +0.6 2.0 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS17565 +0.6 3.1 hypothetical protein compare
CA265_RS20395 +0.6 2.2 hypothetical protein compare
CA265_RS16295 +0.6 3.9 LacI family transcriptional regulator compare
CA265_RS02795 +0.6 1.3 hypothetical protein compare
CA265_RS16105 +0.6 1.8 hypothetical protein compare
CA265_RS23305 +0.6 1.0 hypothetical protein compare
CA265_RS01320 +0.6 1.5 hypothetical protein compare
CA265_RS24355 +0.5 2.1 transcriptional regulator compare
CA265_RS11800 +0.5 3.6 hypothetical protein compare
CA265_RS23820 +0.5 0.9 hypothetical protein compare
CA265_RS04820 +0.5 2.7 GntR family transcriptional regulator compare
CA265_RS16470 +0.5 3.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS20880 +0.5 2.4 hypothetical protein compare
CA265_RS12800 +0.5 1.8 NAD(P)H-dependent oxidoreductase compare
CA265_RS19345 +0.5 3.5 hypothetical protein compare
CA265_RS21445 +0.5 2.8 exodeoxyribonuclease III compare
CA265_RS16270 +0.5 3.0 hypothetical protein compare
CA265_RS13985 +0.5 1.3 hypothetical protein compare
CA265_RS15280 +0.5 3.0 glycine C-acetyltransferase compare
CA265_RS19535 +0.5 3.3 hypothetical protein compare
CA265_RS11050 +0.5 2.0 hypothetical protein compare
CA265_RS18775 +0.5 2.4 hypothetical protein compare
CA265_RS16785 +0.5 1.0 50S ribosomal protein L17 compare
CA265_RS13485 +0.5 1.2 hypothetical protein compare
CA265_RS01225 +0.5 2.0 hypothetical protein compare
CA265_RS17420 +0.5 2.2 glyoxalase compare
CA265_RS03450 +0.5 1.9 hypothetical protein compare
CA265_RS12535 +0.5 3.3 RNA polymerase compare
CA265_RS14325 +0.5 1.4 hypothetical protein compare
CA265_RS09920 +0.5 2.4 protein tyrosine phosphatase compare
CA265_RS20320 +0.5 4.2 hypothetical protein compare
CA265_RS16695 +0.5 2.5 hypothetical protein compare
CA265_RS22475 +0.5 2.1 hypothetical protein compare
CA265_RS24845 +0.5 1.9 STAS/SEC14 domain-containing protein compare
CA265_RS16945 +0.5 1.1 hypothetical protein compare
CA265_RS18855 +0.5 2.1 hypothetical protein compare
CA265_RS01565 +0.5 1.2 circadian clock protein KaiB compare
CA265_RS22590 +0.4 2.4 hypothetical protein compare
CA265_RS09690 +0.4 1.9 hypothetical protein compare
CA265_RS23675 +0.4 1.3 hypothetical protein compare
CA265_RS13555 +0.4 2.3 hypothetical protein compare
CA265_RS24025 +0.4 2.2 hypothetical protein compare
CA265_RS20315 +0.4 3.6 hypothetical protein compare
CA265_RS10540 +0.4 1.1 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS24450 +0.4 1.8 hypothetical protein compare
CA265_RS03280 +0.4 2.0 hypothetical protein compare
CA265_RS22450 +0.4 1.7 GntR family transcriptional regulator compare
CA265_RS19685 +0.4 2.1 hypothetical protein compare
CA265_RS01175 +0.4 2.3 hypothetical protein compare
CA265_RS18275 +0.4 1.3 pyrophosphatase compare
CA265_RS17580 +0.4 2.3 four helix bundle protein compare
CA265_RS01560 +0.4 1.2 circadian clock protein KaiB compare
CA265_RS23670 +0.4 2.3 cyclic nucleotide-binding protein compare
CA265_RS20925 +0.4 2.1 hypothetical protein compare
CA265_RS04245 +0.4 2.2 hypothetical protein compare
CA265_RS19170 +0.4 2.6 chromosome segregation protein ScpA compare
CA265_RS19680 +0.4 2.5 DNA-binding transcriptional regulator OxyR compare
CA265_RS24385 +0.4 1.1 GNAT family N-acetyltransferase compare
CA265_RS19190 +0.4 2.3 transferase compare
CA265_RS12780 +0.4 1.2 hypothetical protein compare
CA265_RS19115 +0.4 2.6 23S rRNA (adenine(2503)-C(2))-methyltransferase compare
CA265_RS03225 +0.4 2.6 hypothetical protein compare
CA265_RS17950 +0.4 1.7 hypothetical protein compare
CA265_RS21115 +0.4 1.7 hypothetical protein compare
CA265_RS14785 +0.4 2.9 pyrroloquinoline quinone biosynthesis protein PqqB compare
CA265_RS10110 +0.4 2.8 hypothetical protein compare
CA265_RS11925 +0.4 1.8 hypothetical protein compare
CA265_RS19405 +0.4 1.8 transcriptional regulator compare
CA265_RS11570 +0.4 1.0 hypothetical protein compare
CA265_RS22530 +0.4 2.2 RDD family protein compare
CA265_RS18530 +0.4 1.1 aspartate aminotransferase family protein compare
CA265_RS16155 +0.4 2.2 tRNA pseudouridine(55) synthase TruB compare
CA265_RS13020 +0.4 2.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS15795 +0.4 2.8 dihydroxy-acid dehydratase compare
CA265_RS24040 +0.4 1.6 seryl-tRNA synthetase compare
CA265_RS16630 +0.4 2.8 hypothetical protein compare
CA265_RS23140 +0.4 1.4 hypothetical protein compare
CA265_RS19350 +0.4 2.5 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare
CA265_RS07845 +0.4 2.8 signal transduction protein compare
CA265_RS20610 +0.4 0.7 hypothetical protein compare
CA265_RS23480 +0.4 1.9 hypothetical protein compare
CA265_RS09480 +0.4 2.6 magnesium transporter compare
CA265_RS01100 +0.4 2.1 transcriptional regulator compare
CA265_RS00055 +0.4 2.5 hypothetical protein compare
CA265_RS20750 +0.4 0.9 hypothetical protein compare
CA265_RS01770 +0.4 1.4 hypothetical protein compare
CA265_RS23835 +0.4 2.0 hypothetical protein compare
CA265_RS17955 +0.4 2.7 hypothetical protein compare
CA265_RS20215 +0.4 1.3 transcriptional regulator compare
CA265_RS15175 +0.4 2.3 thioredoxin-dependent thiol peroxidase compare
CA265_RS25030 +0.4 1.1 hypothetical protein compare
CA265_RS22075 +0.4 2.3 hypothetical protein compare
CA265_RS05845 +0.4 1.9 hypothetical protein compare
CA265_RS02565 +0.4 1.5 hypothetical protein compare
CA265_RS20440 +0.4 2.2 hypothetical protein compare
CA265_RS03210 +0.4 2.0 hypothetical protein compare
CA265_RS21435 +0.4 1.4 hypothetical protein compare
CA265_RS06930 +0.4 1.6 hypothetical protein compare
CA265_RS08620 +0.4 1.7 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data) compare
CA265_RS06180 +0.4 1.4 hypothetical protein compare
CA265_RS01370 +0.4 1.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA265_RS22800 +0.4 2.4 glycosyl transferase compare
CA265_RS25305 +0.4 1.5 hypothetical protein compare
CA265_RS20475 +0.4 1.1 hypothetical protein compare
CA265_RS22460 +0.4 1.9 ABC transporter ATP-binding protein compare
CA265_RS04885 +0.4 0.7 tRNA-Gly compare
CA265_RS19820 +0.4 2.4 LacI family transcriptional regulator compare
CA265_RS07755 +0.4 0.6 hypothetical protein compare
CA265_RS15165 +0.4 2.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS22750 +0.4 1.4 hypothetical protein compare
CA265_RS18525 +0.4 1.8 four helix bundle protein compare
CA265_RS20930 +0.4 2.5 hypothetical protein compare
CA265_RS03115 +0.4 1.1 peroxiredoxin compare
CA265_RS18195 +0.4 1.3 maltose O-acetyltransferase compare
CA265_RS23145 +0.4 1.0 hypothetical protein compare
CA265_RS21255 +0.4 2.6 hypothetical protein compare
CA265_RS14615 +0.4 1.6 hypothetical protein compare
CA265_RS13835 +0.4 1.8 hypothetical protein compare
CA265_RS23505 +0.3 1.1 biopolymer transporter ExbD compare
CA265_RS22260 +0.3 1.5 hypothetical protein compare
CA265_RS22050 +0.3 1.5 hypothetical protein compare
CA265_RS25205 +0.3 1.5 hypothetical protein compare
CA265_RS22295 +0.3 1.1 hypothetical protein compare
CA265_RS08345 +0.3 1.9 L-fucose mutarotase compare
CA265_RS21760 +0.3 1.7 hypothetical protein compare
CA265_RS03665 +0.3 1.7 hypothetical protein compare
CA265_RS19390 +0.3 2.2 UDP-2,3-diacylglucosamine hydrolase compare
CA265_RS25265 +0.3 1.6 hypothetical protein compare
CA265_RS17560 +0.3 2.2 peptidylprolyl isomerase compare
CA265_RS08445 +0.3 0.6 endonuclease compare
CA265_RS25360 +0.3 1.8 phosphoribosyltransferase compare
CA265_RS18985 +0.3 1.8 hypothetical protein compare
CA265_RS19095 +0.3 2.0 DNA-binding transcriptional regulator compare
CA265_RS04745 +0.3 2.1 hypothetical protein compare
CA265_RS02105 +0.3 1.7 hypothetical protein compare
CA265_RS04040 +0.3 1.2 hypothetical protein compare
CA265_RS14170 +0.3 1.1 DNA repair protein compare
CA265_RS15640 +0.3 2.8 sugar kinase compare
CA265_RS12505 +0.3 1.2 hypothetical protein compare
CA265_RS02730 +0.3 2.2 endonuclease compare
CA265_RS21750 +0.3 1.1 hypothetical protein compare
CA265_RS06115 +0.3 2.2 DNA mismatch repair protein MutT compare
CA265_RS12270 +0.3 1.2 RNA polymerase subunit sigma compare
CA265_RS24195 +0.3 2.4 TetR family transcriptional regulator compare
CA265_RS16615 +0.3 0.8 hypothetical protein compare
CA265_RS21450 +0.3 1.7 imidazolonepropionase compare
CA265_RS22355 +0.3 1.2 translation initiation factor compare
CA265_RS03330 +0.3 1.5 hypothetical protein compare
CA265_RS23310 +0.3 1.5 polyketide cyclase compare
CA265_RS15200 +0.3 1.3 hypothetical protein compare
CA265_RS09640 +0.3 1.1 ATPase compare
CA265_RS19420 +0.3 0.5 hypothetical protein compare
CA265_RS15760 +0.3 2.1 peroxiredoxin compare
CA265_RS25150 +0.3 1.2 hypothetical protein compare
CA265_RS12805 +0.3 1.6 hypothetical protein compare
CA265_RS24910 +0.3 1.7 GNAT family N-acetyltransferase compare
CA265_RS18415 +0.3 1.9 hypothetical protein compare
CA265_RS08060 +0.3 0.9 hypothetical protein compare
CA265_RS18780 +0.3 0.9 YicC family protein compare
CA265_RS17285 +0.3 0.9 hypothetical protein compare
CA265_RS02315 +0.3 1.9 single-stranded DNA-binding protein compare
CA265_RS15010 +0.3 1.8 hypothetical protein compare
CA265_RS23720 +0.3 2.1 membrane-bound O-acyltransferase family protein compare
CA265_RS12645 +0.3 1.5 molybdopterin converting factor compare
CA265_RS24700 +0.3 1.9 hypothetical protein compare
CA265_RS09840 +0.3 1.3 YajQ family cyclic di-GMP-binding protein compare
CA265_RS00115 +0.3 1.7 hypothetical protein compare
CA265_RS07100 +0.3 1.6 DUF4440 domain-containing protein compare
CA265_RS16000 +0.3 2.2 hypothetical protein compare
CA265_RS23560 +0.3 1.4 DNA-binding protein compare
CA265_RS15445 +0.3 2.0 hypothetical protein compare
CA265_RS02235 +0.3 2.4 hypothetical protein compare
CA265_RS03120 +0.3 1.2 disulfide bond formation protein DsbA compare
CA265_RS17375 +0.3 1.4 hypothetical protein compare
CA265_RS24960 +0.3 1.6 hypothetical protein compare
CA265_RS23020 +0.3 2.3 hypothetical protein compare
CA265_RS14825 +0.3 0.8 outer membrane protein assembly factor BamD compare
CA265_RS09010 +0.3 1.5 3-phosphoglycerate dehydrogenase compare
CA265_RS17720 +0.3 2.5 hypothetical protein compare
CA265_RS20745 +0.3 0.8 conjugative transposon protein TraK compare
CA265_RS10480 +0.3 1.1 hypothetical protein compare
CA265_RS17345 +0.3 1.9 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS23650 +0.3 1.9 hypothetical protein compare
CA265_RS19940 +0.3 2.6 hypothetical protein compare
CA265_RS19425 +0.3 2.1 nematoblast specific protein compare
CA265_RS15580 +0.3 1.7 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS15840 +0.3 1.2 3-isopropylmalate dehydratase small subunit compare
CA265_RS17785 +0.3 1.4 hypothetical protein compare
CA265_RS25435 +0.3 0.9 hypothetical protein compare
CA265_RS00640 +0.3 1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Dimethyl Sulfoxide across organisms