Experiment set1IT092 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cobalt chloride hexahydrate 0.32 mM

200 most important genes:

  gene name fitness t score description  
AO353_14220 -4.3 -3.0 ribosomal large subunit pseudouridine synthase D compare
AO353_26685 -3.2 -7.2 cobalt efflux pump (from data) conserved
AO353_07355 -3.2 -4.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03580 -3.0 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_21625 -3.0 -2.9 Fe/S biogenesis protein NfuA compare
AO353_00185 -2.9 -3.4 phage tail protein compare
AO353_06040 -2.7 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_13200 -2.6 -11.7 exoribonuclease R compare
AO353_19060 -2.6 -5.9 CysB family transcriptional regulator compare
AO353_13225 -2.6 -4.2 50S ribosomal protein L9 compare
AO353_04185 -2.5 -7.3 DeoR family transcriptional regulator compare
AO353_07075 -2.5 -6.0 elongation factor Tu compare
AO353_17970 -2.4 -15.2 hypothetical protein compare
AO353_13140 -2.4 -6.7 tRNA dimethylallyltransferase compare
AO353_14585 -2.4 -6.3 ribosomal-protein-alanine acetyltransferase compare
AO353_12345 -2.4 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_01220 -2.4 -2.6 hypothetical protein compare
AO353_11915 -2.4 -9.0 agmatine deiminase compare
AO353_03520 -2.3 -3.8 hypothetical protein compare
AO353_03585 -2.3 -3.2 ATP-dependent DNA helicase RuvA compare
AO353_16940 -2.3 -6.9 deoxycytidine triphosphate deaminase compare
AO353_07315 -2.2 -2.6 rRNA methyltransferase compare
AO353_18745 -2.2 -2.8 flagellar biosynthesis protein flip compare
AO353_19530 -2.1 -2.5 quinohemoprotein amine dehydrogenase compare
AO353_01355 -2.1 -8.7 3-oxoacyl-ACP synthase compare
AO353_09285 -2.1 -10.3 reactive intermediate/imine deaminase compare
AO353_06045 -2.1 -8.3 exodeoxyribonuclease V subunit beta compare
AO353_13925 -2.1 -2.4 XRE family transcriptional regulator compare
AO353_11770 -2.0 -2.4 molecular chaperone Hsp33 compare
AO353_11730 -2.0 -9.9 glutamate--cysteine ligase compare
AO353_12935 -2.0 -4.0 glycosyltransferase compare
AO353_03595 -2.0 -2.5 hypothetical protein compare
AO353_12420 -1.9 -4.1 predicted FeS cluster maintenance protein (from data) compare
AO353_09060 -1.9 -3.4 hypothetical protein compare
AO353_12115 -1.9 -3.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_09030 -1.9 -1.9 iron donor protein CyaY compare
AO353_06050 -1.8 -7.0 exodeoxyribonuclease V subunit gamma compare
AO353_09320 -1.8 -8.8 ATP-dependent DNA helicase RecG compare
AO353_07325 -1.8 -2.1 diadenosine tetraphosphatase compare
AO353_03590 -1.8 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_08110 -1.8 -6.5 glutathione synthetase compare
AO353_08420 -1.8 -10.8 ATPase P conserved
AO353_13160 -1.8 -2.9 membrane protease HflC compare
AO353_18540 -1.8 -3.3 pseudouridine synthase compare
AO353_02040 -1.8 -3.1 integration host factor subunit beta compare
AO353_08465 -1.8 -12.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_13905 -1.8 -9.6 tRNA (uracil-5-)-methyltransferase conserved
AO353_08885 -1.7 -11.7 polyphosphate kinase compare
AO353_26390 -1.7 -2.3 glyoxalase compare
AO353_00430 -1.7 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_14150 -1.7 -2.3 peptidylprolyl isomerase compare
AO353_20185 -1.7 -5.9 DNA-binding protein compare
AO353_26835 -1.7 -3.5 transcriptional regulator compare
AO353_19360 -1.7 -2.7 peroxiredoxin compare
AO353_09440 -1.7 -2.6 type VI secretion protein compare
AO353_23590 -1.7 -2.6 ArsR family transcriptional regulator compare
AO353_04355 -1.6 -2.3 homoserine dehydrogenase compare
AO353_19290 -1.6 -3.6 molybdenum cofactor sulfurase compare
AO353_14775 -1.6 -6.0 hypothetical protein compare
AO353_14740 -1.6 -4.0 GTP-binding protein compare
AO353_09040 -1.6 -1.9 diaminopimelate epimerase compare
AO353_09000 -1.6 -5.3 argininosuccinate lyase compare
AO353_14420 -1.6 -3.9 molecular chaperone DnaK compare
AO353_19250 -1.6 -2.0 molybdenum cofactor guanylyltransferase compare
AO353_09240 -1.6 -3.2 acetylglutamate kinase compare
AO353_28210 -1.5 -2.9 2-haloalkanoic acid dehalogenase compare
AO353_04565 -1.5 -5.4 nucleoid-associated protein compare
AO353_16495 -1.5 -5.6 zinc metallopeptidase RseP compare
AO353_00140 -1.5 -4.3 phage tail protein compare
AO353_13720 -1.5 -9.7 arginine decarboxylase compare
AO353_09660 -1.5 -1.8 hypothetical protein compare
AO353_05465 -1.5 -9.7 flavodoxin compare
AO353_17980 -1.5 -8.4 siderophore synthetase compare
AO353_13100 -1.4 -1.9 GTPase RsgA compare
AO353_27470 -1.4 -6.5 sodium:proton antiporter compare
AO353_27650 -1.4 -3.5 cell division protein FtsK compare
AO353_08425 -1.4 -5.1 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO353_05010 -1.4 -1.6 HopJ type III effector protein compare
AO353_01915 -1.4 -1.2 GlcG protein compare
AO353_09260 -1.3 -5.6 ribonuclease PH compare
AO353_03715 -1.3 -2.3 H-NS histone compare
AO353_04490 -1.3 -6.8 murein transglycosylase compare
AO353_10445 -1.3 -2.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_28425 -1.3 -3.2 TetR family transcriptional regulator compare
AO353_00825 -1.3 -2.8 porin compare
AO353_02810 -1.2 -5.4 histidine kinase compare
AO353_04520 -1.2 -4.0 elongation factor 4 compare
AO353_26680 -1.2 -3.5 hypothetical protein compare
AO353_28380 -1.2 -3.0 GntR family transcriptional regulator compare
AO353_05690 -1.2 -3.1 SsrA-binding protein compare
AO353_16450 -1.2 -7.5 protein-PII uridylyltransferase compare
AO353_01485 -1.2 -5.2 ABC transporter compare
AO353_04240 -1.2 -1.9 chemotaxis protein CheW compare
AO353_19090 -1.2 -1.9 MarR family transcriptional regulator compare
AO353_04220 -1.2 -4.0 chemotaxis protein CheY compare
AO353_23495 -1.2 -1.9 SAM-dependent methyltransferase compare
AO353_11165 -1.2 -7.0 hypothetical protein compare
AO353_27365 -1.2 -2.4 hypothetical protein compare
AO353_18305 -1.2 -2.5 RNA helicase compare
AO353_13155 -1.2 -3.0 hypothetical protein compare
AO353_03290 -1.2 -1.5 peptide deformylase compare
AO353_02765 -1.1 -2.3 NAD(P)H-quinone oxidoreductase compare
AO353_27215 -1.1 -1.7 hypothetical protein compare
AO353_06100 -1.1 -2.1 thymidylate synthase compare
AO353_01685 -1.1 -1.5 hypothetical protein compare
AO353_09475 -1.1 -2.8 hypothetical protein compare
AO353_21630 -1.1 -2.4 precorrin-4 C11-methyltransferase compare
AO353_01350 -1.1 -4.8 4-amino-4-deoxychorismate lyase compare
AO353_16155 -1.1 -2.5 antibiotic biosynthesis monooxygenase compare
AO353_10055 -1.1 -6.4 DNA helicase II compare
AO353_04175 -1.1 -3.6 glycerol uptake facilitator GlpF compare
AO353_14485 -1.1 -1.3 pseudouridine synthase compare
AO353_27720 -1.1 -3.8 cupin compare
AO353_00660 -1.1 -1.8 transcriptional regulator compare
AO353_07495 -1.1 -7.8 acyl-CoA dehydrogenase compare
AO353_12915 -1.1 -5.3 carbamoyltransferase compare
AO353_02710 -1.1 -6.7 (p)ppGpp synthetase compare
AO353_05550 -1.1 -4.2 pseudouridine synthase compare
AO353_07555 -1.0 -1.9 glycine cleavage system protein R compare
AO353_15290 -1.0 -5.6 methyltransferase compare
AO353_11750 -1.0 -2.1 ATPase compare
AO353_21615 -1.0 -6.5 methionine synthase compare
AO353_13220 -1.0 -4.0 hypothetical protein compare
AO353_00460 -1.0 -1.7 TetR family transcriptional regulator compare
AO353_08165 -1.0 -2.1 pyrroline-5-carboxylate reductase compare
AO353_17850 -1.0 -1.7 SAM-dependent methyltransferase compare
AO353_10945 -1.0 -2.3 cytochrome C compare
AO353_18890 -1.0 -2.9 cytochrome C compare
AO353_00510 -1.0 -3.4 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_00210 -1.0 -3.6 terminase compare
AO353_29215 -1.0 -1.4 alpha/beta hydrolase compare
AO353_12690 -1.0 -0.8 acyl carrier protein compare
AO353_00610 -1.0 -1.6 cytochrome C oxidase Cbb3 compare
AO353_12020 -1.0 -1.4 hypothetical protein compare
AO353_06380 -0.9 -4.1 ATP-binding protein compare
AO353_23245 -0.9 -1.8 DNA-3-methyladenine glycosylase compare
AO353_17290 -0.9 -3.3 multidrug transporter compare
AO353_11530 -0.9 -4.7 diguanylate cyclase compare
AO353_01190 -0.9 -1.5 hypothetical protein compare
AO353_24105 -0.9 -4.7 LysR family transcriptional regulator compare
AO353_28315 -0.9 -2.4 3-demethylubiquinone-9 3-methyltransferase compare
AO353_01480 -0.9 -5.0 hypothetical protein compare
AO353_17235 -0.9 -2.4 4-carboxymuconolactone decarboxylase compare
AO353_16530 -0.9 -1.4 ribonuclease HII compare
AO353_15260 -0.9 -3.2 stringent starvation protein A compare
AO353_16740 -0.9 -2.5 phage tail protein compare
AO353_05420 -0.9 -1.3 peptide chain release factor 3 compare
AO353_06320 -0.9 -2.9 AsnC family transcriptional regulator compare
AO353_21595 -0.9 -3.9 serine/threonine protein kinase compare
AO353_20680 -0.9 -2.1 cell division protein compare
AO353_08880 -0.9 -1.7 exopolyphosphatase compare
AO353_00860 -0.9 -2.6 EstX protein compare
AO353_11305 -0.9 -3.1 adenylylsulfate kinase compare
AO353_22075 -0.9 -2.7 hypothetical protein compare
AO353_23315 -0.9 -1.7 hypothetical protein compare
AO353_10780 -0.9 -1.3 DNA-binding protein compare
AO353_28475 -0.9 -2.7 NmrA family transcriptional regulator compare
AO353_03615 -0.9 -2.0 cold-shock protein compare
AO353_17640 -0.9 -1.9 serine peptidase compare
AO353_14935 -0.9 -2.1 aminopeptidase compare
AO353_27155 -0.9 -1.8 hypothetical protein compare
AO353_16745 -0.9 -1.8 ArsR family transcriptional regulator compare
AO353_13135 -0.9 -4.8 DNA mismatch repair protein compare
AO353_02195 -0.9 -3.0 spermidine synthase compare
AO353_16810 -0.9 -2.7 recombinase RecX compare
AO353_15725 -0.9 -2.5 hypothetical protein compare
AO353_13150 -0.9 -4.9 GTPase HflX compare
AO353_09885 -0.9 -1.5 transcriptional regulator PhoU compare
AO353_21355 -0.9 -1.8 xylose isomerase compare
AO353_19070 -0.9 -2.4 hypothetical protein compare
AO353_04810 -0.9 -1.0 hypothetical protein compare
AO353_07155 -0.9 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07700 -0.9 -3.0 electron transfer flavoprotein subunit alpha compare
AO353_10440 -0.9 -2.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_02010 -0.8 -3.6 glycosyl transferase family 1 compare
AO353_02390 -0.8 -4.5 aminopeptidase compare
AO353_06125 -0.8 -2.8 ArsR family transcriptional regulator compare
AO353_11035 -0.8 -3.9 hypothetical protein compare
AO353_16805 -0.8 -3.1 recombinase RecA compare
AO353_26225 -0.8 -3.2 hypothetical protein compare
AO353_03050 -0.8 -3.4 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_08265 -0.8 -3.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_09065 -0.8 -2.8 hypothetical protein compare
AO353_12385 -0.8 -3.0 polyhydroxyalkanoic acid system protein compare
AO353_21585 -0.8 -2.1 hydroxyacid dehydrogenase compare
AO353_07910 -0.8 -1.6 hypothetical protein compare
AO353_08695 -0.8 -4.2 adenylate cyclase compare
AO353_06480 -0.8 -1.8 50S rRNA methyltransferase compare
AO353_14495 -0.8 -5.2 acetolactate synthase 3 catalytic subunit compare
AO353_22195 -0.8 -1.1 metal ABC transporter permease compare
AO353_18765 -0.8 -1.9 hypothetical protein compare
AO353_22855 -0.8 -2.0 hypothetical protein compare
AO353_12090 -0.8 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_29145 -0.8 -2.2 HxlR family transcriptional regulator compare
AO353_06455 -0.8 -1.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_03040 -0.8 -4.0 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
AO353_02735 -0.8 -6.6 chemotaxis protein CheY compare
AO353_21830 -0.8 -5.5 chemotaxis protein CheY compare
AO353_25450 -0.8 -1.6 cyanate hydratase compare
AO353_01595 -0.8 -1.4 Flp pilus assembly protein CpaB compare


Specific Phenotypes

For 7 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Cobalt chloride hexahydrate across organisms