Experiment set1IT091 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cobalt chloride hexahydrate 0.16 mM

200 most important genes:

  gene name fitness t score description  
AO353_26685 -4.4 -7.4 cobalt efflux pump (from data) conserved
AO353_07315 -3.6 -3.5 rRNA methyltransferase compare
AO353_18540 -3.6 -4.2 pseudouridine synthase compare
AO353_07355 -3.3 -5.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_04565 -3.0 -7.5 nucleoid-associated protein compare
AO353_03595 -3.0 -5.6 hypothetical protein compare
AO353_13100 -3.0 -2.8 GTPase RsgA compare
AO353_27720 -2.9 -6.7 cupin compare
AO353_02250 -2.8 -5.0 chorismate synthase compare
AO353_12500 -2.8 -2.7 shikimate kinase compare
AO353_12420 -2.8 -4.3 predicted FeS cluster maintenance protein (from data) compare
AO353_05625 -2.6 -2.8 transcription elongation factor GreA compare
AO353_01355 -2.6 -10.2 3-oxoacyl-ACP synthase compare
AO353_00825 -2.6 -5.1 porin compare
AO353_04355 -2.5 -3.3 homoserine dehydrogenase compare
AO353_01685 -2.4 -2.6 hypothetical protein compare
AO353_00460 -2.3 -4.1 TetR family transcriptional regulator compare
AO353_05550 -2.2 -7.7 pseudouridine synthase compare
AO353_13225 -2.2 -4.6 50S ribosomal protein L9 compare
AO353_11730 -2.1 -10.7 glutamate--cysteine ligase compare
AO353_20185 -2.1 -7.7 DNA-binding protein compare
AO353_14085 -2.1 -3.5 hypothetical protein compare
AO353_03580 -2.1 -4.7 ATP-dependent DNA helicase RuvB compare
AO353_23495 -2.1 -2.4 SAM-dependent methyltransferase compare
AO353_11165 -2.0 -9.8 hypothetical protein compare
AO353_04185 -1.9 -6.7 DeoR family transcriptional regulator compare
AO353_10455 -1.9 -2.6 tRNA modification GTPase MnmE compare
AO353_06495 -1.9 -5.7 gamma-glutamyl phosphate reductase compare
AO353_02810 -1.8 -6.8 histidine kinase compare
AO353_08165 -1.8 -3.5 pyrroline-5-carboxylate reductase compare
AO353_14150 -1.7 -2.6 peptidylprolyl isomerase compare
AO353_02640 -1.7 -1.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_24130 -1.7 -2.3 hypothetical protein compare
AO353_09440 -1.7 -2.6 type VI secretion protein compare
AO353_09000 -1.7 -5.6 argininosuccinate lyase compare
AO353_06040 -1.7 -4.4 exodeoxyribonuclease V subunit alpha compare
AO353_12115 -1.7 -3.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_05690 -1.6 -3.7 SsrA-binding protein compare
AO353_13220 -1.6 -6.2 hypothetical protein compare
AO353_16940 -1.6 -6.0 deoxycytidine triphosphate deaminase compare
AO353_13160 -1.6 -2.6 membrane protease HflC compare
AO353_26680 -1.6 -4.1 hypothetical protein compare
AO353_01405 -1.6 -5.9 23S rRNA pseudouridylate synthase compare
AO353_08420 -1.5 -9.7 ATPase P conserved
AO353_19145 -1.5 -4.6 protease HtpX compare
AO353_14585 -1.5 -5.6 ribosomal-protein-alanine acetyltransferase compare
AO353_20175 -1.5 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_00650 -1.5 -3.0 cytochrome biogenesis protein compare
AO353_04175 -1.5 -4.9 glycerol uptake facilitator GlpF compare
AO353_15785 -1.5 -7.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_04520 -1.4 -4.2 elongation factor 4 compare
AO353_02005 -1.4 -2.5 hypothetical protein compare
AO353_09240 -1.4 -3.4 acetylglutamate kinase compare
AO353_15465 -1.4 -5.2 cytochrome C oxidase compare
AO353_09260 -1.4 -6.1 ribonuclease PH compare
AO353_06045 -1.4 -5.5 exodeoxyribonuclease V subunit beta compare
AO353_24120 -1.4 -2.5 hypothetical protein compare
AO353_11770 -1.3 -2.3 molecular chaperone Hsp33 compare
AO353_14775 -1.3 -5.9 hypothetical protein compare
AO353_13140 -1.3 -5.1 tRNA dimethylallyltransferase compare
AO353_28320 -1.3 -3.4 aminopeptidase compare
AO353_10945 -1.3 -3.1 cytochrome C compare
AO353_13200 -1.3 -8.3 exoribonuclease R compare
AO353_17970 -1.3 -9.9 hypothetical protein compare
AO353_03615 -1.3 -3.5 cold-shock protein compare
AO353_03710 -1.2 -3.2 formyltetrahydrofolate deformylase compare
AO353_13420 -1.2 -2.2 hypothetical protein compare
AO353_18305 -1.2 -4.2 RNA helicase compare
AO353_06050 -1.2 -5.6 exodeoxyribonuclease V subunit gamma compare
AO353_07075 -1.2 -4.1 elongation factor Tu compare
AO353_15460 -1.2 -5.9 cytochrome o ubiquinol oxidase subunit III compare
AO353_14740 -1.2 -3.4 GTP-binding protein compare
AO353_08110 -1.2 -5.5 glutathione synthetase compare
AO353_08425 -1.2 -3.9 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO353_27950 -1.2 -2.6 hypothetical protein compare
AO353_03795 -1.2 -3.6 fumarate hydratase compare
AO353_22810 -1.2 -1.4 hypothetical protein compare
AO353_19250 -1.2 -1.3 molybdenum cofactor guanylyltransferase compare
AO353_14420 -1.1 -3.6 molecular chaperone DnaK compare
AO353_00355 -1.1 -2.6 transcriptional regulator compare
AO353_22195 -1.1 -1.6 metal ABC transporter permease compare
AO353_14220 -1.1 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_21615 -1.1 -7.2 methionine synthase compare
AO353_27380 -1.1 -1.8 pyocin R2, holin compare
AO353_23245 -1.1 -2.3 DNA-3-methyladenine glycosylase compare
AO353_05465 -1.1 -7.8 flavodoxin compare
AO353_12915 -1.1 -5.8 carbamoyltransferase compare
AO353_19090 -1.1 -1.9 MarR family transcriptional regulator compare
AO353_09050 -1.1 -2.8 recombinase XerC compare
AO353_17175 -1.1 -2.8 beta-ketoadipyl CoA thiolase compare
AO353_27550 -1.1 -2.1 hypothetical protein compare
AO353_00140 -1.1 -2.8 phage tail protein compare
AO353_28425 -1.1 -2.9 TetR family transcriptional regulator compare
AO353_00750 -1.0 -3.4 GntR family transcriptional regulator compare
AO353_16425 -1.0 -1.7 Fe-S metabolism protein SufE compare
AO353_18225 -1.0 -5.6 ATP-dependent RNA helicase HrpA compare
AO353_13640 -1.0 -2.5 histidine kinase compare
AO353_00430 -1.0 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12935 -1.0 -2.6 glycosyltransferase compare
AO353_09320 -1.0 -5.8 ATP-dependent DNA helicase RecG compare
AO353_14485 -1.0 -1.4 pseudouridine synthase compare
AO353_14395 -1.0 -3.0 poly(A) polymerase compare
AO353_02010 -1.0 -3.9 glycosyl transferase family 1 compare
AO353_23410 -1.0 -1.5 hypothetical protein compare
AO353_00635 -0.9 -2.4 hypothetical protein compare
AO353_15905 -0.9 -4.9 outer membrane protein assembly factor BamB compare
AO353_09150 -0.9 -2.7 cytochrome C2 compare
AO353_16805 -0.9 -3.9 recombinase RecA compare
AO353_09275 -0.9 -2.4 DNA-directed RNA polymerase subunit omega compare
AO353_14400 -0.9 -2.6 Fis family transcriptional regulator compare
AO353_19060 -0.9 -3.7 CysB family transcriptional regulator compare
AO353_09250 -0.9 -2.1 exodeoxyribonuclease III compare
AO353_09060 -0.9 -1.5 hypothetical protein compare
AO353_26765 -0.9 -5.9 magnesium-translocating P-type ATPase compare
AO353_28565 -0.9 -2.6 hypothetical protein compare
AO353_12105 -0.9 -3.4 peptidase S41 compare
AO353_02220 -0.9 -1.6 hypothetical protein compare
AO353_12045 -0.9 -4.1 iron transporter compare
AO353_11915 -0.9 -4.6 agmatine deiminase compare
AO353_01375 -0.9 -3.9 phosphate acyltransferase compare
AO353_20340 -0.9 -2.7 gamma-carboxygeranoyl-CoA hydratase compare
AO353_25260 -0.9 -3.2 hypothetical protein compare
AO353_08650 -0.9 -2.2 aliphatic sulfonate ABC transporter ATP-binding protein compare
AO353_09450 -0.9 -3.1 type VI secretion protein compare
AO353_18985 -0.9 -2.8 hypothetical protein compare
AO353_22360 -0.9 -2.0 ABC transporter ATP-binding protein compare
AO353_13715 -0.9 -2.4 translation initiation factor Sui1 compare
AO353_20925 -0.9 -2.4 hypothetical protein compare
AO353_15445 -0.9 -2.5 disulfide bond formation protein B compare
AO353_00195 -0.9 -1.2 virion morphogenesis protein compare
AO353_02015 -0.9 -4.4 acetyltransferase compare
AO353_24760 -0.9 -2.4 glutamine amidotransferase compare
AO353_09285 -0.9 -5.5 reactive intermediate/imine deaminase compare
AO353_15290 -0.9 -4.7 methyltransferase compare
AO353_12345 -0.8 -1.5 twin-arginine protein translocation system subunit TatC compare
AO353_15455 -0.8 -6.5 cytochrome o ubiquinol oxidase subunit I compare
AO353_17965 -0.8 -3.3 hypothetical protein compare
AO353_00665 -0.8 -3.0 adenine phosphoribosyltransferase compare
AO353_11480 -0.8 -3.2 hypothetical protein compare
AO353_15555 -0.8 -3.2 fumarylacetoacetase compare
AO353_02060 -0.8 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_20865 -0.8 -1.9 cold-shock protein compare
AO353_28890 -0.8 -2.9 hypothetical protein compare
AO353_23725 -0.8 -3.3 hypothetical protein compare
AO353_26390 -0.8 -1.9 glyoxalase compare
AO353_20565 -0.8 -1.1 tRNA-Ala compare
AO353_26945 -0.8 -1.6 transcriptional regulator compare
AO353_15470 -0.8 -5.9 protoheme IX farnesyltransferase compare
AO353_03515 -0.8 -1.2 cold-shock protein compare
AO353_27535 -0.8 -2.5 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_23875 -0.8 -2.5 ketosteroid isomerase compare
AO353_04445 -0.8 -2.8 GntR family transcriptional regulator compare
AO353_12245 -0.8 -1.9 hypothetical protein compare
AO353_10445 -0.8 -1.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_04220 -0.8 -2.5 chemotaxis protein CheY compare
AO353_09885 -0.8 -0.8 transcriptional regulator PhoU compare
AO353_06380 -0.8 -2.6 ATP-binding protein compare
AO353_15825 -0.8 -2.4 serine acetyltransferase compare
AO353_07270 -0.8 -1.8 transcriptional regulator compare
AO353_06415 -0.8 -2.5 hypothetical protein compare
AO353_02710 -0.8 -5.3 (p)ppGpp synthetase compare
AO353_21595 -0.8 -3.8 serine/threonine protein kinase compare
AO353_22475 -0.8 -2.4 alkaline phosphatase compare
AO353_26225 -0.8 -3.4 hypothetical protein compare
AO353_19360 -0.8 -1.9 peroxiredoxin compare
AO353_24275 -0.7 -1.8 transcriptional regulator compare
AO353_02000 -0.7 -2.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_18510 -0.7 -2.4 hypothetical protein compare
AO353_12690 -0.7 -0.7 acyl carrier protein compare
AO353_27580 -0.7 -2.9 hypothetical protein compare
AO353_29215 -0.7 -1.4 alpha/beta hydrolase compare
AO353_09945 -0.7 -2.2 LysR family transcriptional regulator compare
AO353_13925 -0.7 -1.7 XRE family transcriptional regulator compare
AO353_21100 -0.7 -2.5 DNA-binding protein compare
AO353_12720 -0.7 -2.5 hypothetical protein compare
AO353_24340 -0.7 -1.6 TetR family transcriptional regulator compare
AO353_05150 -0.7 -2.8 ABC transporter ATP-binding protein compare
AO353_14995 -0.7 -2.5 16S rRNA methyltransferase compare
AO353_12670 -0.7 -2.4 glycosyl transferase compare
AO353_27275 -0.7 -2.4 hypothetical protein compare
AO353_00620 -0.7 -1.1 cytochrome C oxidase Cbb3 compare
AO353_02020 -0.7 -2.8 hypothetical protein compare
AO353_06585 -0.7 -3.6 hypothetical protein compare
AO353_28930 -0.7 -1.4 hypothetical protein compare
AO353_23785 -0.7 -1.2 hypothetical protein compare
AO353_08880 -0.7 -1.5 exopolyphosphatase compare
AO353_15680 -0.7 -2.3 cation-binding protein compare
AO353_02780 -0.7 -4.5 tRNA 2-thiocytidine biosynthesis protein TtcA compare
AO353_21430 -0.7 -2.0 hypothetical protein compare
AO353_19290 -0.7 -1.5 molybdenum cofactor sulfurase compare
AO353_15830 -0.7 -1.9 transcriptional regulator compare
AO353_13460 -0.7 -1.8 phosphate starvation-inducible protein PsiF compare
AO353_05135 -0.7 -4.5 toluene tolerance protein compare
AO353_00330 -0.7 -4.2 hypothetical protein compare
AO353_00515 -0.7 -1.8 hypothetical protein compare
AO353_15270 -0.7 -2.3 phospholipid-binding protein compare
AO353_03015 -0.7 -2.2 arginine N-succinyltransferase compare
AO353_21625 -0.7 -1.3 Fe/S biogenesis protein NfuA compare
AO353_21410 -0.7 -1.2 hypothetical protein compare
AO353_08265 -0.6 -2.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Cobalt chloride hexahydrate across organisms