Experiment set1IT091 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3536.1 -5.7 -5.5 FIG01210913: hypothetical protein compare
Xcc-8004.957.1 -5.6 -6.6 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.622.1 -5.5 -3.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.4481.1 -5.4 -5.3 hypothetical protein compare
Xcc-8004.1967.1 -4.7 -10.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.3855.1 -4.7 -8.4 FIG01209965: hypothetical protein compare
Xcc-8004.2387.1 -4.7 -3.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.2011.1 -4.5 -3.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4620.1 -4.5 -11.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2260.1 -4.4 -8.9 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.1964.1 -4.4 -15.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.621.1 -4.4 -7.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.1676.1 -4.4 -12.5 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.4503.1 -4.3 -5.2 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.956.1 -4.3 -9.5 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) compare
Xcc-8004.1053.1 -4.3 -9.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.2081.1 -4.2 -5.7 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2323.1 -4.2 -10.7 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.2012.1 -4.2 -9.6 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.2316.1 -4.1 -15.0 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.2944.1 -4.0 -10.3 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.1049.1 -4.0 -9.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.2956.1 -4.0 -3.7 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.2946.1 -4.0 -4.9 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.3282.1 -4.0 -10.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.1615.1 -3.9 -3.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4439.1 -3.9 -14.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3281.1 -3.9 -8.5 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.645.1 -3.9 -2.1 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4738.1 -3.8 -14.5 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.271.1 -3.8 -2.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2079.1 -3.8 -5.1 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.2320.1 -3.8 -6.7 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.4596.1 -3.8 -11.0 hypothetical protein compare
Xcc-8004.4026.1 -3.7 -8.4 FIG01209666: hypothetical protein compare
Xcc-8004.2931.1 -3.7 -7.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.1059.1 -3.7 -10.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.1058.1 -3.6 -4.4 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.4737.1 -3.6 -6.4 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.2943.1 -3.5 -6.2 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.2743.1 -3.5 -13.8 FIG01210856: hypothetical protein compare
Xcc-8004.2318.1 -3.5 -6.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.3324.1 -3.5 -5.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.505.1 -3.5 -8.5 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.4073.1 -3.5 -13.6 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.601.1 -3.5 -7.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3346.1 -3.5 -3.4 hypothetical protein compare
Xcc-8004.4824.1 -3.5 -11.1 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2945.1 -3.4 -3.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.451.1 -3.4 -5.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.4283.1 -3.4 -1.5 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.4025.1 -3.4 -12.4 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.2322.1 -3.4 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.1060.1 -3.4 -10.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.2421.1 -3.3 -17.0 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.4423.1 -3.3 -1.8 General secretion pathway protein N compare
Xcc-8004.2385.1 -3.3 -12.1 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.1205.1 -3.3 -4.0 hypothetical protein compare
Xcc-8004.2977.1 -3.3 -20.1 hypothetical protein compare
Xcc-8004.2420.1 -3.3 -8.2 PHA synthase subunit compare
Xcc-8004.3361.1 -3.3 -7.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.130.1 -3.2 -7.7 hypothetical protein compare
Xcc-8004.659.1 -3.2 -2.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2086.1 -3.2 -2.5 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.1336.1 -3.1 -8.3 two-component system sensor protein compare
Xcc-8004.4024.1 -3.1 -6.6 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.2713.1 -3.1 -1.6 Nitrate/nitrite transporter compare
Xcc-8004.1763.1 -3.1 -4.7 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2319.1 -3.1 -3.5 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.657.1 -3.0 -8.1 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.43.1 -3.0 -8.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.1236.1 -3.0 -7.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4485.1 -3.0 -10.2 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.2386.1 -2.9 -13.0 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.1616.1 -2.9 -1.6 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.608.1 -2.9 -7.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.1027.1 -2.9 -1.8 Two-component system sensor protein compare
Xcc-8004.2954.1 -2.9 -15.2 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.44.1 -2.9 -21.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.186.1 -2.8 -10.9 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Xcc-8004.2561.1 -2.8 -10.6 FIG01213638: hypothetical protein compare
Xcc-8004.4170.1 -2.8 -2.6 LSU ribosomal protein L25p compare
Xcc-8004.3433.1 -2.7 -7.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.968.1 -2.7 -10.9 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.2346.1 -2.7 -2.5 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.618.1 -2.7 -2.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.3049.1 -2.7 -7.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.4514.1 -2.7 -11.7 Glycosyltransferase compare
Xcc-8004.2384.1 -2.7 -12.9 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.4486.1 -2.6 -12.4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4398.1 -2.6 -7.8 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.2947.1 -2.6 -8.0 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.1568.1 -2.6 -3.4 Glycine cleavage system H protein compare
Xcc-8004.5020.1 -2.6 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.577.1 -2.6 -5.9 Transcriptional regulator, MarR family compare
Xcc-8004.3537.1 -2.6 -7.1 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.4046.1 -2.5 -11.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1955.1 -2.5 -4.5 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2948.1 -2.5 -5.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.4739.1 -2.5 -5.9 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.1437.1 -2.5 -7.4 Kup system potassium uptake protein compare
Xcc-8004.1891.1 -2.5 -2.7 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.1792.1 -2.5 -8.1 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.3283.1 -2.4 -6.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.17.1 -2.4 -5.6 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) compare
Xcc-8004.1057.1 -2.4 -10.6 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.1359.1 -2.4 -7.0 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1372.1 -2.4 -3.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1511.1 -2.4 -3.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3395.1 -2.3 -2.7 Transcriptional regulator, GntR family compare
Xcc-8004.4976.1 -2.3 -10.5 hypothetical protein compare
Xcc-8004.2074.1 -2.3 -5.6 Transcriptional regulator, MerR family compare
Xcc-8004.3362.1 -2.3 -4.8 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Xcc-8004.3862.1 -2.3 -6.4 Septum site-determining protein MinC compare
Xcc-8004.4200.1 -2.3 -2.6 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4473.1 -2.2 -13.5 FIG01212400: hypothetical protein compare
Xcc-8004.127.1 -2.2 -2.5 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2957.1 -2.2 -8.0 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.1662.1 -2.2 -9.6 RNA polymerase sigma-54 factor RpoN compare
Xcc-8004.3363.1 -2.2 -5.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Xcc-8004.3978.1 -2.2 -2.3 FIG01211989: hypothetical protein compare
Xcc-8004.1434.1 -2.2 -1.8 FIG000859: hypothetical protein YebC compare
Xcc-8004.1914.1 -2.2 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.589.1 -2.2 -3.3 hypothetical protein compare
Xcc-8004.1491.1 -2.2 -12.4 Glycosyltransferase compare
Xcc-8004.1515.1 -2.1 -3.0 hypothetical protein compare
Xcc-8004.2105.1 -2.1 -6.7 FIG01210123: hypothetical protein compare
Xcc-8004.395.1 -2.1 -6.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Xcc-8004.2754.1 -2.1 -10.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.1241.1 -2.1 -4.7 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3976.1 -2.1 -4.6 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2217.1 -2.1 -4.6 FIG01209779: hypothetical protein compare
Xcc-8004.1413.1 -2.1 -10.3 Outer membrane receptor proteins, mostly Fe transport compare
Xcc-8004.2942.1 -2.1 -5.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.1436.1 -2.0 -2.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.2314.1 -2.0 -9.0 FIG01209975: hypothetical protein compare
Xcc-8004.4752.1 -2.0 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4062.1 -2.0 -8.1 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Xcc-8004.1727.1 -2.0 -3.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.270.1 -2.0 -5.5 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.234.1 -1.9 -9.5 cardiolipin synthase compare
Xcc-8004.3360.1 -1.9 -4.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.3815.1 -1.9 -4.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.1010.1 -1.9 -4.2 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.4510.1 -1.9 -1.7 ATP binding component of ABC-transporter compare
Xcc-8004.4275.1 -1.9 -5.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3156.1 -1.9 -6.2 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.3786.1 -1.9 -3.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.1873.1 -1.8 -2.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.3394.1 -1.8 -3.1 hypothetical protein compare
Xcc-8004.1117.1 -1.8 -2.5 hypothetical protein compare
Xcc-8004.3834.1 -1.8 -3.0 Pathogenicity-related protein compare
Xcc-8004.4776.1 -1.8 -3.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.986.1 -1.8 -3.2 hypothetical protein compare
Xcc-8004.429.1 -1.8 -1.5 hypothetical protein compare
Xcc-8004.3875.1 -1.7 -1.3 FIG01212144: hypothetical protein compare
Xcc-8004.4507.1 -1.7 -5.3 Glycosyltransferase compare
Xcc-8004.4430.1 -1.7 -1.4 General secretion pathway protein G compare
Xcc-8004.1559.1 -1.7 -6.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.3663.1 -1.7 -2.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.4890.1 -1.7 -10.6 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.1282.1 -1.7 -4.5 sulfur deprivation response regulator compare
Xcc-8004.3459.1 -1.7 -2.0 FIG01212836: hypothetical protein compare
Xcc-8004.4428.1 -1.7 -1.4 General secretion pathway protein I compare
Xcc-8004.4063.1 -1.7 -6.7 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Xcc-8004.713.1 -1.7 -1.5 FIG01210186: hypothetical protein compare
Xcc-8004.5343.1 -1.7 -6.3 hypothetical protein compare
Xcc-8004.703.1 -1.7 -1.3 hypothetical protein compare
Xcc-8004.3130.1 -1.7 -5.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.1086.1 -1.7 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1871.1 -1.7 -2.2 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2219.1 -1.6 -3.7 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.3310.1 -1.6 -5.4 Chromosome partition protein smc compare
Xcc-8004.3054.1 -1.6 -1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4836.1 -1.6 -4.3 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1132.1 -1.6 -2.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.4425.1 -1.6 -5.0 General secretion pathway protein L compare
Xcc-8004.4699.1 -1.6 -1.3 Flagellar motor protein compare
Xcc-8004.4241.1 -1.6 -2.1 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.1022.1 -1.6 -6.0 hypothetical protein compare
Xcc-8004.1334.1 -1.5 -1.5 hypothetical protein compare
Xcc-8004.337.1 -1.5 -3.1 ATPase, AFG1 family compare
Xcc-8004.4788.1 -1.5 -1.3 FIG01210406: hypothetical protein compare
Xcc-8004.1050.1 -1.5 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.1966.1 -1.5 -4.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3770.1 -1.5 -6.1 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Xcc-8004.1685.1 -1.5 -1.6 hypothetical protein compare
Xcc-8004.955.1 -1.5 -3.2 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.402.1 -1.5 -3.6 FIG01209770: hypothetical protein compare
Xcc-8004.4665.1 -1.5 -2.6 FIG01211765: hypothetical protein compare
Xcc-8004.5133.1 -1.5 -0.8 FIG01212313: hypothetical protein compare
Xcc-8004.2383.1 -1.4 -2.4 FIG01211288: hypothetical protein compare
Xcc-8004.4891.1 -1.4 -4.8 Dolichol-phosphate mannosyltransferase compare
Xcc-8004.741.1 -1.4 -2.0 hypothetical protein compare
Xcc-8004.1658.1 -1.4 -6.0 hypothetical protein compare
Xcc-8004.5203.1 -1.4 -1.6 Twin-arginine translocation protein TatB compare
Xcc-8004.4431.1 -1.4 -5.0 General secretion pathway protein F compare
Xcc-8004.4892.1 -1.4 -6.7 FIG01210656: hypothetical protein compare
Xcc-8004.689.1 -1.4 -1.0 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.4427.1 -1.4 -1.3 General secretion pathway protein J compare


Specific Phenotypes

For 6 genes in this experiment