Experiment set1IT091 for Xanthomonas campestris pv. campestris strain 8004

1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

Group: in planta
Media:
Culturing: Xantho_ML2
By: Alice on 6/5/18

Specific Phenotypes

For 6 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Campylobacter Iron Metabolism	1
Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more.	1
D-galactonate catabolism	1
Folate Biosynthesis	1
Hemin transport system	1
High affinity phosphate transporter and control of PHO regulon	1
Multidrug Resistance Efflux Pumps	1
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)	1
Phosphate metabolism	1
Ton and Tol transport systems	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Galactose metabolism
• Folate biosynthesis
• Biosynthesis of phenylpropanoids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
4-aminobenzoate biosynthesis I	2	2	1
4-aminobenzoate biosynthesis II	2	1	1
D-galactonate degradation	3	3	1
superpathway of tetrahydrofolate biosynthesis	10	8	1
superpathway of candicidin biosynthesis	11	4	1
superpathway of tetrahydrofolate biosynthesis and salvage	12	10	1
superpathway of chorismate metabolism	59	41	1