Experiment set1IT090 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Nickel (II) chloride hexahydrate 0.625 mM

200 most important genes:

  gene name fitness t score description  
AO353_18540 -3.1 -3.7 pseudouridine synthase compare
AO353_03585 -3.0 -3.6 ATP-dependent DNA helicase RuvA compare
AO353_12500 -3.0 -2.1 shikimate kinase compare
AO353_11945 -2.9 -2.0 4-oxalocrotonate tautomerase compare
AO353_07355 -2.9 -4.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13390 -2.9 -10.0 N-acylglucosamine 2-epimerase compare
AO353_18505 -2.7 -2.2 translation initiation factor 2 compare
AO353_19790 -2.7 -10.4 sodium:proton antiporter conserved
AO353_07315 -2.6 -2.6 rRNA methyltransferase compare
AO353_12580 -2.5 -2.9 type II secretory protein PulK compare
AO353_09890 -2.5 -5.6 phosphate ABC transporter ATP-binding protein compare
AO353_08915 -2.5 -12.5 cystathionine gamma-synthase conserved
AO353_00825 -2.5 -3.4 porin compare
AO353_16805 -2.5 -6.1 recombinase RecA compare
AO353_05690 -2.5 -3.7 SsrA-binding protein compare
AO353_10670 -2.4 -7.1 shikimate dehydrogenase compare
AO353_02810 -2.4 -8.2 histidine kinase compare
AO353_00610 -2.4 -2.8 cytochrome C oxidase Cbb3 compare
AO353_08880 -2.3 -2.8 exopolyphosphatase compare
AO353_19145 -2.3 -4.7 protease HtpX compare
AO353_03710 -2.3 -3.8 formyltetrahydrofolate deformylase compare
AO353_13100 -2.3 -2.2 GTPase RsgA compare
AO353_07325 -2.3 -2.2 diadenosine tetraphosphatase compare
AO353_04355 -2.3 -2.6 homoserine dehydrogenase compare
AO353_06045 -2.2 -7.4 exodeoxyribonuclease V subunit beta compare
AO353_18960 -2.2 -2.7 terminase compare
AO353_13225 -2.2 -3.6 50S ribosomal protein L9 compare
AO353_12090 -2.1 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08835 -2.0 -9.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_18890 -2.0 -4.8 cytochrome C compare
AO353_08265 -2.0 -5.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_09000 -2.0 -5.6 argininosuccinate lyase compare
AO353_14150 -2.0 -2.3 peptidylprolyl isomerase compare
AO353_17940 -2.0 -3.2 hypothetical protein compare
AO353_02070 -2.0 -6.7 prephenate dehydratase compare
AO353_14400 -1.9 -4.4 Fis family transcriptional regulator compare
AO353_08015 -1.9 -6.6 5,10-methylenetetrahydrofolate reductase compare
AO353_09905 -1.9 -8.3 phosphate-binding protein compare
AO353_12420 -1.9 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_03580 -1.9 -3.5 ATP-dependent DNA helicase RuvB compare
AO353_09885 -1.9 -2.2 transcriptional regulator PhoU compare
AO353_04175 -1.9 -4.6 glycerol uptake facilitator GlpF compare
AO353_22195 -1.8 -2.2 metal ABC transporter permease compare
AO353_20175 -1.8 -3.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_14395 -1.8 -4.3 poly(A) polymerase compare
AO353_11730 -1.8 -8.4 glutamate--cysteine ligase compare
AO353_16375 -1.8 -2.7 hypothetical protein compare
AO353_18485 -1.8 -4.2 nitroreductase compare
AO353_13580 -1.8 -3.7 copper resistance protein CopZ compare
AO353_13155 -1.8 -3.9 hypothetical protein compare
AO353_12070 -1.8 -7.4 imidazoleglycerol-phosphate dehydratase compare
AO353_12345 -1.8 -2.4 twin-arginine protein translocation system subunit TatC compare
AO353_10985 -1.7 -2.4 hypothetical protein compare
AO353_27160 -1.7 -2.9 Pathogenicity locus compare
AO353_06495 -1.7 -4.8 gamma-glutamyl phosphate reductase compare
AO353_06050 -1.7 -6.2 exodeoxyribonuclease V subunit gamma compare
AO353_02970 -1.7 -3.1 carbon storage regulator compare
AO353_28640 -1.7 -3.6 hypothetical protein compare
AO353_11165 -1.7 -7.8 hypothetical protein compare
AO353_14495 -1.7 -8.9 acetolactate synthase 3 catalytic subunit compare
AO353_10705 -1.7 -4.1 tryptophan synthase subunit alpha compare
AO353_03715 -1.7 -2.4 H-NS histone compare
AO353_28930 -1.6 -2.7 hypothetical protein compare
AO353_13160 -1.6 -2.4 membrane protease HflC compare
AO353_24130 -1.6 -1.8 hypothetical protein compare
AO353_05625 -1.6 -1.8 transcription elongation factor GreA compare
AO353_01410 -1.6 -3.3 ribonuclease E compare
AO353_19360 -1.6 -2.5 peroxiredoxin compare
AO353_09050 -1.6 -3.8 recombinase XerC compare
AO353_17540 -1.6 -2.9 helicase compare
AO353_10925 -1.6 -6.6 hypothetical protein compare
AO353_03615 -1.6 -3.3 cold-shock protein compare
AO353_05105 -1.6 -7.7 histidinol-phosphate aminotransferase compare
AO353_12105 -1.6 -5.2 peptidase S41 compare
AO353_05420 -1.5 -1.8 peptide chain release factor 3 compare
AO353_18765 -1.5 -3.4 hypothetical protein compare
AO353_09045 -1.5 -1.9 hypothetical protein compare
AO353_03015 -1.5 -4.0 arginine N-succinyltransferase compare
AO353_27500 -1.5 -2.1 hypothetical protein compare
AO353_21595 -1.5 -5.0 serine/threonine protein kinase compare
AO353_03605 -1.5 -1.2 FmdB family transcriptional regulator compare
AO353_26525 -1.5 -2.2 hypothetical protein compare
AO353_03985 -1.5 -3.7 imelysin compare
AO353_17975 -1.5 -5.8 arabinose ABC transporter permease compare
AO353_03215 -1.5 -3.5 pyridoxamine 5'-phosphate oxidase compare
AO353_06850 -1.4 -4.1 MFS transporter compare
AO353_04190 -1.4 -2.2 glycerol-3-phosphate dehydrogenase compare
AO353_12930 -1.4 -3.1 GlcNAc-PI de-N-acetylase compare
AO353_09895 -1.4 -5.1 phosphate ABC transporter permease compare
AO353_10710 -1.4 -4.1 tryptophan synthase subunit beta compare
AO353_12880 -1.4 -1.7 ADP-heptose--LPS heptosyltransferase compare
AO353_06585 -1.4 -5.4 hypothetical protein compare
AO353_17970 -1.4 -9.4 hypothetical protein compare
AO353_00660 -1.4 -2.4 transcriptional regulator compare
AO353_06040 -1.4 -3.0 exodeoxyribonuclease V subunit alpha compare
AO353_09240 -1.3 -3.2 acetylglutamate kinase compare
AO353_18780 -1.3 -5.1 cobyrinic acid a,c-diamide synthase compare
AO353_04185 -1.3 -5.1 DeoR family transcriptional regulator compare
AO353_14590 -1.3 -1.1 serine kinase/phosphatase compare
AO353_09745 -1.3 -1.4 hypothetical protein compare
AO353_02250 -1.3 -2.8 chorismate synthase compare
AO353_04565 -1.3 -4.4 nucleoid-associated protein compare
AO353_01355 -1.3 -5.8 3-oxoacyl-ACP synthase compare
AO353_29005 -1.3 -1.8 hypothetical protein compare
AO353_23495 -1.3 -2.0 SAM-dependent methyltransferase compare
AO353_09320 -1.3 -6.5 ATP-dependent DNA helicase RecG compare
AO353_20170 -1.3 -3.6 trigger factor compare
AO353_07155 -1.3 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10455 -1.3 -1.7 tRNA modification GTPase MnmE compare
AO353_20785 -1.2 -3.9 carbon storage regulator CsrA compare
AO353_15905 -1.2 -4.9 outer membrane protein assembly factor BamB compare
AO353_19625 -1.2 -2.9 isopentenyl-diphosphate delta-isomerase compare
AO353_00750 -1.2 -3.0 GntR family transcriptional regulator compare
AO353_29270 -1.2 -2.2 type VI secretion system protein compare
AO353_08475 -1.2 -4.8 phosphoserine phosphatase compare
AO353_04365 -1.2 -3.6 recombinase XerD compare
AO353_14775 -1.2 -4.5 hypothetical protein compare
AO353_14500 -1.2 -4.2 acetolactate synthase 3 regulatory subunit compare
AO353_14940 -1.2 -2.7 malate:quinone oxidoreductase compare
AO353_21615 -1.2 -6.5 methionine synthase compare
AO353_12075 -1.2 -4.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10320 -1.2 -1.7 hypothetical protein compare
AO353_13640 -1.1 -2.5 histidine kinase compare
AO353_15185 -1.1 -3.6 ATPase compare
AO353_05110 -1.1 -5.8 histidinol dehydrogenase compare
AO353_02040 -1.1 -1.6 integration host factor subunit beta compare
AO353_15250 -1.1 -2.6 cytochrome B compare
AO353_08110 -1.1 -4.4 glutathione synthetase compare
AO353_26180 -1.1 -2.5 phage tail protein compare
AO353_22215 -1.1 -1.9 hypothetical protein compare
AO353_20265 -1.1 -2.1 spore coat protein compare
AO353_13575 -1.1 -2.0 hypothetical protein compare
AO353_01265 -1.1 -3.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO353_06415 -1.1 -3.3 hypothetical protein compare
AO353_11340 -1.1 -1.2 MarR family transcriptional regulator compare
AO353_28115 -1.1 -2.4 DNA glycosylase compare
AO353_04930 -1.1 -2.3 flavodoxin compare
AO353_20095 -1.1 -3.1 histidine kinase compare
AO353_23270 -1.1 -2.9 hypothetical protein compare
AO353_07515 -1.1 -1.2 transporter compare
AO353_00900 -1.1 -4.9 2-methylisocitrate lyase compare
AO353_08420 -1.1 -6.3 ATPase P compare
AO353_13200 -1.1 -6.3 exoribonuclease R compare
AO353_20565 -1.1 -0.7 tRNA-Ala compare
AO353_08115 -1.1 -4.0 energy transducer TonB compare
AO353_26550 -1.1 -1.2 hypothetical protein compare
AO353_06720 -1.1 -1.7 NrdR family transcriptional regulator compare
AO353_13925 -1.1 -1.4 XRE family transcriptional regulator compare
AO353_28700 -1.1 -1.6 hypothetical protein compare
AO353_21655 -1.1 -2.7 cobalamin biosynthesis protein CobW compare
AO353_18560 -1.1 -1.3 class I peptide chain release factor compare
AO353_00650 -1.0 -2.0 cytochrome biogenesis protein compare
AO353_15445 -1.0 -2.5 disulfide bond formation protein B compare
AO353_00510 -1.0 -3.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_02075 -1.0 -5.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_03590 -1.0 -2.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_18630 -1.0 -5.1 beta-ketoacyl-ACP synthase compare
AO353_12240 -1.0 -3.4 histidine utilization repressor compare
AO353_15260 -1.0 -3.2 stringent starvation protein A compare
AO353_12470 -1.0 -7.2 peptidase compare
AO353_27695 -1.0 -4.9 isocitrate dehydrogenase compare
AO353_02060 -1.0 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_14435 -1.0 -2.4 Rieske (2Fe-2S) protein compare
AO353_03100 -1.0 -1.6 XRE family transcriptional regulator compare
AO353_01480 -1.0 -5.0 hypothetical protein compare
AO353_22665 -1.0 -3.0 AsnC family transcriptional regulator compare
AO353_12935 -1.0 -2.2 glycosyltransferase compare
AO353_00345 -1.0 -3.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_24595 -1.0 -0.9 hypothetical protein compare
AO353_26680 -1.0 -2.5 hypothetical protein compare
AO353_08975 -1.0 -3.7 heme biosynthesis protein HemY compare
AO353_14740 -1.0 -2.6 GTP-binding protein compare
AO353_17640 -1.0 -1.7 serine peptidase compare
AO353_19840 -1.0 -2.2 hypothetical protein compare
AO353_00140 -1.0 -2.2 phage tail protein compare
AO353_02440 -1.0 -6.0 peptidase S41 compare
AO353_29280 -1.0 -2.2 hypothetical protein compare
AO353_28055 -1.0 -2.0 hypothetical protein compare
AO353_23620 -1.0 -1.3 hypothetical protein compare
AO353_05465 -1.0 -6.5 flavodoxin compare
AO353_14930 -1.0 -1.5 GntR family transcriptional regulator compare
AO353_22800 -1.0 -1.9 sulfite reductase compare
AO353_08685 -1.0 -4.8 N-acetylglutamate synthase compare
AO353_27415 -1.0 -1.2 hypothetical protein compare
AO353_19250 -1.0 -1.7 molybdenum cofactor guanylyltransferase compare
AO353_22920 -1.0 -2.9 GntR family transcriptional regulator compare
AO353_24120 -1.0 -1.3 hypothetical protein compare
AO353_27535 -1.0 -1.6 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_14115 -1.0 -3.5 gamma-glutamyl kinase compare
AO353_26865 -0.9 -2.1 transcriptional regulator compare
AO353_00460 -0.9 -2.0 TetR family transcriptional regulator compare
AO353_10950 -0.9 -4.7 thiol:disulfide interchange protein compare
AO353_00505 -0.9 -2.3 3-ketoacyl-CoA thiolase compare
AO353_09900 -0.9 -5.4 phosphate ABC transporter permease compare
AO353_25825 -0.9 -5.0 sodium:proton antiporter compare
AO353_17885 -0.9 -1.2 hypothetical protein compare
AO353_15595 -0.9 -1.8 hypothetical protein compare
AO353_20425 -0.9 -1.7 ArsC family transcriptional regulator compare
AO353_22500 -0.9 -1.6 hypothetical protein compare
AO353_04105 -0.9 -4.4 argininosuccinate synthase compare


Specific Phenotypes

For 11 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Nickel (II) chloride hexahydrate across organisms