Experiment set1IT090 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with benzoic acid 0.1 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23305 +1.1 2.3 hypothetical protein compare
CA265_RS22825 +0.9 3.5 reactive intermediate/imine deaminase compare
CA265_RS24385 +0.8 1.9 GNAT family N-acetyltransferase compare
CA265_RS21580 +0.8 3.1 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS17285 +0.8 2.5 hypothetical protein compare
CA265_RS19465 +0.7 2.6 protein tyrosine phosphatase compare
CA265_RS13720 +0.7 2.3 4-oxalocrotonate tautomerase compare
CA265_RS17940 +0.7 3.5 hypothetical protein compare
CA265_RS17885 +0.6 2.6 CopY family transcriptional repressor compare
CA265_RS17025 +0.6 1.1 hypothetical protein compare
CA265_RS07245 +0.6 2.4 hypothetical protein compare
CA265_RS01975 +0.5 1.3 cell division protein compare
CA265_RS07470 +0.5 1.9 hypothetical protein compare
CA265_RS00490 +0.5 1.7 hypothetical protein compare
CA265_RS12855 +0.5 1.8 hypothetical protein compare
CA265_RS16985 +0.5 1.7 hypothetical protein compare
CA265_RS17300 +0.5 3.0 hypothetical protein compare
CA265_RS23045 +0.5 2.3 cold-shock protein compare
CA265_RS23950 +0.5 1.5 ribonuclease HII compare
CA265_RS00270 +0.5 1.7 hypothetical protein compare
CA265_RS23820 +0.5 1.3 hypothetical protein compare
CA265_RS12075 +0.5 1.3 hypothetical protein compare
CA265_RS12780 +0.5 1.2 hypothetical protein compare
CA265_RS16040 +0.5 3.3 hypothetical protein compare
CA265_RS22750 +0.4 2.0 hypothetical protein compare
CA265_RS18850 +0.4 1.7 hypothetical protein compare
CA265_RS03530 +0.4 1.5 hypothetical protein compare
CA265_RS15035 +0.4 1.5 prevent-host-death protein compare
CA265_RS23705 +0.4 2.2 esterase compare
CA265_RS09050 +0.4 2.2 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS08510 +0.4 2.8 oxidoreductase compare
CA265_RS05395 +0.4 1.7 heme oxygenase compare
CA265_RS18260 +0.4 0.7 hypothetical protein compare
CA265_RS18160 +0.4 2.1 short chain dehydrogenase compare
CA265_RS23035 +0.4 1.4 four-helix bundle copper-binding protein compare
CA265_RS01200 +0.4 2.1 hypothetical protein compare
CA265_RS23915 +0.4 2.3 G-D-S-L family lipolytic protein compare
CA265_RS14125 +0.4 1.0 hypothetical protein compare
CA265_RS08340 +0.4 2.5 amidohydrolase compare
CA265_RS15195 +0.4 2.8 hypothetical protein compare
CA265_RS16585 +0.4 1.2 hypothetical protein compare
CA265_RS21355 +0.4 1.5 hypothetical protein compare
CA265_RS25060 +0.4 1.9 hypothetical protein compare
CA265_RS19455 +0.4 2.9 hypothetical protein compare
CA265_RS09920 +0.4 1.9 protein tyrosine phosphatase compare
CA265_RS21485 +0.4 1.0 acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase compare
CA265_RS19140 +0.4 1.0 tRNA-Ile compare
CA265_RS24480 +0.4 1.3 hypothetical protein compare
CA265_RS13200 +0.4 2.7 phosphatase PAP2 family protein compare
CA265_RS13010 +0.4 1.2 transcriptional regulator compare
CA265_RS09695 +0.4 1.1 hypothetical protein compare
CA265_RS24845 +0.4 1.4 STAS/SEC14 domain-containing protein compare
CA265_RS11995 +0.4 1.2 RNA polymerase subunit sigma compare
CA265_RS20315 +0.4 3.1 hypothetical protein compare
CA265_RS13555 +0.4 2.0 hypothetical protein compare
CA265_RS20570 +0.4 1.9 hypothetical protein compare
CA265_RS15435 +0.4 2.1 glycine transporter (from data) compare
CA265_RS20190 +0.4 1.7 thiamine biosynthesis protein ThiF compare
CA265_RS07440 +0.4 2.4 hypothetical protein compare
CA265_RS13965 +0.4 1.3 hypothetical protein compare
CA265_RS13325 +0.4 1.8 RNA polymerase sigma-70 factor compare
CA265_RS21365 +0.4 1.4 thiol reductase thioredoxin compare
CA265_RS08745 +0.4 2.1 STAS/SEC14 domain-containing protein compare
CA265_RS08805 +0.4 2.6 LacI family transcriptional regulator compare
CA265_RS24200 +0.4 1.9 fatty acid hydroxylase compare
CA265_RS12805 +0.4 2.1 hypothetical protein compare
CA265_RS22590 +0.4 2.2 hypothetical protein compare
CA265_RS00830 +0.4 1.6 hypothetical protein compare
CA265_RS15370 +0.4 1.8 glycosyl hydrolase compare
CA265_RS20320 +0.4 3.2 hypothetical protein compare
CA265_RS10480 +0.4 1.3 hypothetical protein compare
CA265_RS24360 +0.3 2.1 ATPase compare
CA265_RS20280 +0.3 0.8 DoxX family protein compare
CA265_RS09015 +0.3 1.8 hypothetical protein compare
CA265_RS00360 +0.3 1.7 hypothetical protein compare
CA265_RS18925 +0.3 2.4 metallophosphoesterase compare
CA265_RS20925 +0.3 1.9 hypothetical protein compare
CA265_RS24995 +0.3 1.8 hypothetical protein compare
CA265_RS22290 +0.3 1.6 NADPH quinone reductase MdaB compare
CA265_RS09615 +0.3 2.0 thioesterase compare
CA265_RS22415 +0.3 1.9 hypothetical protein compare
CA265_RS19655 +0.3 1.4 carboxymuconolactone decarboxylase family protein compare
CA265_RS09195 +0.3 2.2 Fis family transcriptional regulator compare
CA265_RS20365 +0.3 0.7 hypothetical protein compare
CA265_RS14640 +0.3 0.6 UDP-glucose 4-epimerase compare
CA265_RS00395 +0.3 1.1 hypothetical protein compare
CA265_RS12835 +0.3 2.2 polysaccharide deacetylase compare
CA265_RS14130 +0.3 1.8 hypothetical protein compare
CA265_RS23905 +0.3 1.9 hypothetical protein compare
CA265_RS10490 +0.3 1.6 PhnA protein compare
CA265_RS18550 +0.3 0.4 N-acetyltransferase compare
CA265_RS18225 +0.3 1.8 DNA-binding response regulator compare
CA265_RS25180 +0.3 1.7 hypothetical protein compare
CA265_RS04245 +0.3 1.4 hypothetical protein compare
CA265_RS06585 +0.3 1.7 hypothetical protein compare
CA265_RS23675 +0.3 0.6 hypothetical protein compare
CA265_RS00250 +0.3 1.6 oxidoreductase compare
CA265_RS08915 +0.3 2.2 hypothetical protein compare
CA265_RS00525 +0.3 1.4 aldo/keto reductase compare
CA265_RS14085 +0.3 2.0 hypothetical protein compare
CA265_RS02550 +0.3 0.9 tRNA-Phe compare
CA265_RS19765 +0.3 1.0 hypothetical protein compare
CA265_RS24910 +0.3 1.6 GNAT family N-acetyltransferase compare
CA265_RS14650 +0.3 1.5 thiol-disulfide oxidoreductase compare
CA265_RS23835 +0.3 1.3 hypothetical protein compare
CA265_RS08970 +0.3 1.2 hypothetical protein compare
CA265_RS25030 +0.3 1.2 hypothetical protein compare
CA265_RS20525 +0.3 0.7 hypothetical protein compare
CA265_RS14480 +0.3 1.8 hypothetical protein compare
CA265_RS05915 +0.3 1.7 hypothetical protein compare
CA265_RS00040 +0.3 0.7 hypothetical protein compare
CA265_RS03415 +0.3 1.2 hypothetical protein compare
CA265_RS12800 +0.3 1.3 NAD(P)H-dependent oxidoreductase compare
CA265_RS18855 +0.3 1.6 hypothetical protein compare
CA265_RS18525 +0.3 1.8 four helix bundle protein compare
CA265_RS04820 +0.3 1.5 GntR family transcriptional regulator compare
CA265_RS04640 +0.3 1.6 efflux transporter periplasmic adaptor subunit compare
CA265_RS16685 +0.3 2.1 ATPase compare
CA265_RS21450 +0.3 1.4 imidazolonepropionase compare
CA265_RS20225 +0.3 0.6 DNA (cytosine-5-)-methyltransferase compare
CA265_RS24355 +0.3 1.3 transcriptional regulator compare
CA265_RS23460 +0.3 1.1 hypothetical protein compare
CA265_RS11095 +0.3 1.9 hypothetical protein compare
CA265_RS11010 +0.3 1.8 hypothetical protein compare
CA265_RS11475 +0.3 1.5 hypothetical protein compare
CA265_RS18125 +0.3 1.9 gliding motility protein GldL compare
CA265_RS18780 +0.3 0.8 YicC family protein compare
CA265_RS23355 +0.3 1.5 hypothetical protein compare
CA265_RS05945 +0.3 1.4 polysaccharide biosynthesis protein GtrA compare
CA265_RS24955 +0.3 1.3 methyltransferase type 11 compare
CA265_RS19515 +0.3 1.2 aldehyde dehydrogenase compare
CA265_RS06635 +0.3 1.3 hypothetical protein compare
CA265_RS15175 +0.3 1.7 thioredoxin-dependent thiol peroxidase compare
CA265_RS09075 +0.3 2.0 hypothetical protein compare
CA265_RS19610 +0.3 0.7 hypothetical protein compare
CA265_RS16950 +0.3 1.8 hypothetical protein compare
CA265_RS01855 +0.3 1.9 hypothetical protein compare
CA265_RS11800 +0.3 1.4 hypothetical protein compare
CA265_RS19485 +0.3 1.4 hypothetical protein compare
CA265_RS25330 +0.3 0.8 DoxX family protein compare
CA265_RS11050 +0.3 1.6 hypothetical protein compare
CA265_RS13270 +0.3 1.1 hypothetical protein compare
CA265_RS07230 +0.3 0.7 hypothetical protein compare
CA265_RS12010 +0.3 1.4 hypothetical protein compare
CA265_RS17565 +0.3 0.9 hypothetical protein compare
CA265_RS09635 +0.3 1.1 GxxExxY protein compare
CA265_RS20520 +0.3 1.4 hypothetical protein compare
CA265_RS17680 +0.3 1.6 hypothetical protein compare
CA265_RS21080 +0.3 1.2 hypothetical protein compare
CA265_RS05090 +0.3 1.1 hypothetical protein compare
CA265_RS14070 +0.3 1.6 hypothetical protein compare
CA265_RS18530 +0.3 0.8 aspartate aminotransferase family protein compare
CA265_RS00925 +0.3 1.6 hypothetical protein compare
CA265_RS12200 +0.3 2.0 hypothetical protein compare
CA265_RS02245 +0.3 1.3 hypothetical protein compare
CA265_RS23140 +0.3 0.8 hypothetical protein compare
CA265_RS06365 +0.3 2.1 hypothetical protein compare
CA265_RS25435 +0.3 0.8 hypothetical protein compare
CA265_RS21760 +0.3 1.4 hypothetical protein compare
CA265_RS02425 +0.3 1.1 GTP cyclohydrolase compare
CA265_RS03235 +0.3 1.3 hypothetical protein compare
CA265_RS08230 +0.3 1.9 redoxin compare
CA265_RS19680 +0.3 1.7 DNA-binding transcriptional regulator OxyR compare
CA265_RS19590 +0.3 0.9 hypothetical protein compare
CA265_RS14435 +0.3 1.3 GNAT family N-acetyltransferase compare
CA265_RS23270 +0.3 1.6 hypothetical protein compare
CA265_RS07880 +0.3 2.0 transcriptional regulator compare
CA265_RS23455 +0.3 1.1 hypothetical protein compare
CA265_RS19640 +0.3 1.4 hypothetical protein compare
CA265_RS01225 +0.3 1.0 hypothetical protein compare
CA265_RS04780 +0.3 0.9 polyketide cyclase compare
CA265_RS22860 +0.3 1.4 hypothetical protein compare
CA265_RS16785 +0.3 0.5 50S ribosomal protein L17 compare
CA265_RS22530 +0.3 1.5 RDD family protein compare
CA265_RS14360 +0.3 0.9 preprotein translocase subunit SecA compare
CA265_RS03375 +0.3 1.4 tRNA hydroxylase compare
CA265_RS25295 +0.3 2.1 DoxX family protein compare
CA265_RS05210 +0.3 1.2 tRNA methyltransferase compare
CA265_RS20795 +0.3 1.6 hypothetical protein compare
CA265_RS07655 +0.3 1.5 hypothetical protein compare
CA265_RS09725 +0.3 2.3 tolB protein precursor compare
CA265_RS06560 +0.3 1.3 hypothetical protein compare
CA265_RS21060 +0.3 0.8 hypothetical protein compare
CA265_RS17390 +0.3 1.3 PadR family transcriptional regulator compare
CA265_RS10035 +0.3 0.9 transcriptional regulator compare
CA265_RS05880 +0.3 1.6 DNA-binding response regulator compare
CA265_RS24965 +0.3 1.6 hypothetical protein compare
CA265_RS09400 +0.3 1.4 hypothetical protein compare
CA265_RS24050 +0.3 1.3 DNA-binding protein compare
CA265_RS18545 +0.3 1.2 argininosuccinate synthase compare
CA265_RS09935 +0.3 0.8 hypothetical protein compare
CA265_RS15165 +0.3 1.3 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS22720 +0.3 1.1 hypothetical protein compare
CA265_RS18275 +0.3 0.7 pyrophosphatase compare
CA265_RS22395 +0.3 1.1 VOC family virulence protein compare
CA265_RS15005 +0.3 1.8 porin compare
CA265_RS06930 +0.3 1.1 hypothetical protein compare
CA265_RS17060 +0.3 1.5 adenylyl-sulfate kinase compare
CA265_RS17950 +0.3 0.5 hypothetical protein compare
CA265_RS17720 +0.3 2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress benzoic acid across organisms