Experiment set1IT090 for Caulobacter crescentus NA1000

Compare to:

L-Proline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03281 +2.8 21.4 AsnC-family transcriptional regulator compare
CCNA_02000 +2.1 3.4 SSU ribosomal protein S2P compare
CCNA_02028 +2.1 3.1 NTF2 superfamily protein compare
CCNA_02250 +2.0 4.6 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_00684 +2.0 8.7 anti-sigma factor, ChrR-family compare
CCNA_02252 +2.0 5.9 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01851 +2.0 15.2 quinol cytochrome oxidase polypeptide II compare
CCNA_01848 +2.0 13.7 quinol cytochrome oxidase polypeptide IV compare
CCNA_02732 +1.9 5.2 hypothetical protein compare
CCNA_01840 +1.8 15.5 MerR-family transcriptional regulator compare
CCNA_03951 +1.8 9.5 hypothetical protein compare
CCNA_01684 +1.8 8.6 phenylalanine-4-hydroxylase compare
CCNA_R0037 +1.8 7.5 tRNA-Glu compare
CCNA_03961 +1.8 6.1 hypothetical protein compare
CCNA_01712 +1.8 13.2 CopY/TcrY family transcriptional repressor compare
CCNA_01751 +1.8 7.2 aminodeoxychorismate lyase compare
CCNA_01804 +1.8 11.1 glutathione peroxidase compare
CCNA_02021 +1.7 7.0 hypothetical protein compare
CCNA_01850 +1.7 13.2 quinol cytochrome oxidase polypeptide I compare
CCNA_03064 +1.7 8.2 PadR-family transcriptional regulator compare
CCNA_01373 +1.7 7.1 hypothetical protein compare
CCNA_00752 +1.7 11.3 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_01780 +1.7 12.5 exopolyphosphatase compare
CCNA_01849 +1.7 9.2 quinol cytochrome oxidase polypeptide III compare
CCNA_01526 +1.7 5.7 flagellar biosynthesis regulatory protein flaF compare
CCNA_00699 +1.7 6.1 LSU ribosomal protein L28P compare
CCNA_03289 +1.7 9.6 HicB-family RNA-binding protein compare
CCNA_01681 +1.7 5.9 RimI-like acetyltransferase compare
CCNA_02004 +1.6 3.3 SOS-induced inhibitor of cell division SidA compare
CCNA_01913 +1.6 10.3 MarR-family transcriptional regulator compare
CCNA_02646 +1.6 2.2 cell division protein MraZ compare
CCNA_02591 +1.6 7.0 glutaredoxin compare
CCNA_01059 +1.6 14.2 S-layer protein rsaA compare
CCNA_01801 +1.6 7.0 hypothetical protein compare
CCNA_01690 +1.6 6.4 MAPEG family membrane protein compare
CCNA_02026 +1.6 6.2 hypothetical protein compare
CCNA_00648 +1.6 12.2 nitrate response regulator NasT compare
CCNA_01979 +1.6 8.5 LexA repressor compare
CCNA_03280 +1.6 13.7 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01679 +1.6 9.6 succinylglutamic semialdehyde dehydrogenase compare
CCNA_00264 +1.6 11.1 C4-dicarboxylate transport protein compare
CCNA_02957 +1.6 4.9 ArsR-family transcriptional regulator compare
CCNA_01790 +1.6 6.1 protein translocase subunit secG compare
CCNA_00518 +1.6 10.9 LSU ribosomal protein L25P compare
CCNA_01573 +1.6 9.0 ArsR-family transcriptional regulator compare
CCNA_01802 +1.6 3.3 hypothetical protein compare
CCNA_01619 +1.6 8.1 NYN domain protein compare
CCNA_02081 +1.5 3.7 Sec-independent protein translocase protein tatB compare
CCNA_01813 +1.5 8.8 tRNA-dihydrouridine synthase compare
CCNA_02416 +1.5 7.8 DNA-binding protein HU compare
CCNA_03123 +1.5 10.3 ArsR-family transcriptional regulator compare
CCNA_03271 +1.5 9.8 methionine gamma-lyase compare
CCNA_02297 +1.5 5.9 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_01742 +1.5 6.8 hypothetical protein compare
CCNA_01525 +1.5 6.9 flagellar biosynthesis repressor flbT compare
CCNA_01752 +1.5 7.6 YicC-family protein compare
CCNA_02367 +1.5 10.9 CelR-family transcriptional regulator compare
CCNA_01541 +1.5 9.5 LysR-family transcriptional regulator compare
CCNA_01816 +1.5 9.5 nitrogen regulation protein ntrY compare
CCNA_01060 +1.5 5.9 type I protein secretion ATP-binding protein RsaD compare
CCNA_02980 +1.5 9.8 tryptophan 2,3-dioxygenase compare
CCNA_02467 +1.5 9.0 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_02339 +1.5 9.1 methyltransferase compare
CCNA_01847 +1.5 10.5 cytochrome c oxidase assembly protein Surf1 compare
CCNA_02942 +1.4 4.5 nucleoside-diphosphate-sugar epimerase compare
CCNA_00919 +1.4 5.3 hypothetical protein compare
CCNA_01931 +1.4 7.8 TetR-family transcriptional regulator compare
CCNA_01186 +1.4 8.1 hypothetical protein compare
CCNA_01655 +1.4 6.8 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_02617 +1.4 9.7 histidinol-phosphate aminotransferase compare
CCNA_03287 +1.4 9.8 PadR-family transcriptional regulator compare
CCNA_02330 +1.4 6.5 hypothetical protein compare
CCNA_02941 +1.4 3.9 transcription elongation factor greA compare
CCNA_03740 +1.4 7.2 cysteine synthase compare
CCNA_02287 +1.4 7.7 TetR-family transcriptional regulator compare
CCNA_03012 +1.4 7.1 peroxiredoxin compare
CCNA_01173 +1.4 6.5 chorismate mutase compare
CCNA_02025 +1.4 5.6 hypothetical protein compare
CCNA_02805 +1.4 4.8 hypothetical protein compare
CCNA_02447 +1.4 10.1 PspA/IM30 family regulatory protein compare
CCNA_03989 +1.4 10.0 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01826 +1.4 7.4 vitamin B12 receptor compare
CCNA_02103 +1.4 7.2 hypothetical protein compare
CCNA_00292 +1.3 3.6 phosphate transport system permease protein pstC compare
CCNA_01949 +1.3 4.0 bactofilin A BacA compare
CCNA_01728 +1.3 6.6 short chain dehydrogenase compare
CCNA_02616 +1.3 8.1 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01827 +1.3 6.8 cobyric acid synthase CobQ compare
CCNA_02448 +1.3 10.1 hypothetical protein compare
CCNA_03252 +1.3 9.5 CopY/TcrY-family transcriptional regulator compare
CCNA_02619 +1.3 10.5 stomatin/prohibitin-related protein compare
CCNA_01074 +1.3 2.1 entericidin B-like protein compare
CCNA_01580 +1.3 6.1 M15 superfamily membrane peptidase compare
CCNA_03260 +1.3 5.9 queuosine biosynthesis protein QueD compare
CCNA_03959 +1.3 1.2 hypothetical protein compare
CCNA_01393 +1.3 10.2 soluble lytic murein transglycosylase compare
CCNA_02063 +1.3 4.4 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_01942 +1.3 6.2 Rrf2 family protein compare
CCNA_01193 +1.3 9.4 amylosucrase compare
CCNA_00153 +1.3 5.9 adenine nucleotide exchange factor GrpE compare
CCNA_03479 +1.3 7.1 MarR-family transcriptional regulator compare
CCNA_03643 +1.3 1.8 succinate dehydrogenase membrane anchor subunit compare
CCNA_01181 +1.3 8.0 hypothetical protein compare
CCNA_03062 +1.3 8.2 cell wall hydrolase family protein compare
CCNA_02132 +1.3 5.6 LacI-family transcriptional regulator compare
CCNA_03108 +1.3 9.3 TonB-dependent outer membrane receptor compare
CCNA_01528 +1.3 7.1 flagellin fljK compare
CCNA_00726 +1.3 9.5 acyl-CoA dehydrogenase compare
CCNA_00028 +1.3 4.2 TonB-dependent receptor compare
CCNA_03948 +1.3 2.5 hypothetical protein compare
CCNA_02575 +1.3 3.7 hypothetical protein compare
CCNA_00505 +1.3 6.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02030 +1.3 4.5 hypothetical protein compare
CCNA_01593 +1.3 6.8 Xaa-pro aminopeptidase compare
CCNA_02576 +1.2 7.8 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_00207 +1.2 6.9 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_02728 +1.2 6.1 hypothetical protein compare
CCNA_00675 +1.2 5.4 VapC-like PIN domain ribonuclease compare
CCNA_02324 +1.2 7.6 heat shock protein 33 hsp33 compare
CCNA_01926 +1.2 6.8 GGDEF diguanylate cyclase DgcB compare
CCNA_01608 +1.2 5.3 TetR-family transcriptional regulator compare
CCNA_00895 +1.2 5.0 hypothetical protein compare
CCNA_01622 +1.2 3.6 Rsh ppGpp hydrolase-synthetase compare
CCNA_03107 +1.2 5.1 cytidine deaminase compare
CCNA_01533 +1.2 6.0 hypothetical protein compare
CCNA_02270 +1.2 3.5 MarR-family transcriptional regulator compare
CCNA_00939 +1.2 5.6 MarR-family transcriptional regulator compare
CCNA_01629 +1.2 6.7 signal peptidase I compare
CCNA_02368 +1.2 8.8 alpha-glucosidase compare
CCNA_02475 +1.2 8.5 transcriptional regulator vanR compare
CCNA_02338 +1.2 6.8 hypothetical protein compare
CCNA_01678 +1.2 6.6 arginine N-succinyltransferase, beta chain compare
CCNA_03808 +1.2 7.1 organic solvent resistance transport system Ttg2C protein compare
CCNA_03129 +1.2 8.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_00447 +1.2 5.7 chemotaxis protein cheD compare
CCNA_03089 +1.2 5.8 hypothetical protein compare
CCNA_02841 +1.2 3.9 hypothetical protein compare
CCNA_01680 +1.2 7.0 succinylarginine dihydrolase compare
CCNA_00872 +1.2 3.8 glutaredoxin compare
CCNA_02273 +1.2 3.9 glutathione peroxidase compare
CCNA_03325 +1.2 4.2 hypothetical protein compare
CCNA_00750 +1.2 7.9 FeaR-family transcriptional regulator compare
CCNA_03609 +1.2 3.2 outer membrane protein compare
CCNA_00161 +1.2 6.2 hypothetical protein compare
CCNA_00931 +1.2 7.8 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_03372 +1.2 3.1 bacterioferritin-associated ferredoxin compare
CCNA_02644 +1.2 3.0 cell division protein FtsL compare
CCNA_00296 +1.1 4.9 phosphate regulon response regulator PhoB compare
CCNA_02976 +1.1 6.1 MCP-signal associated domain protein compare
CCNA_02379 +1.1 6.8 hypothetical protein compare
CCNA_00998 +1.1 5.5 ROS/MUCR transcriptional regulator compare
CCNA_02695 +1.1 4.2 hypothetical protein compare
CCNA_00929 +1.1 8.1 Riboflavin-specific deaminase family protein compare
CCNA_00756 +1.1 4.1 hypothetical protein compare
CCNA_00448 +1.1 6.7 cheU protein compare
CCNA_02854 +1.1 4.5 two-component response regulator compare
CCNA_02012 +1.1 7.1 metal-dependent hydrolase compare
CCNA_00555 +1.1 4.8 nitrogen regulatory protein P-II compare
CCNA_01339 +1.1 5.0 ArsR-family transcriptional regulator compare
CCNA_01748 +1.1 6.4 methyltransferase compare
CCNA_01716 +1.1 1.3 hypothetical protein compare
CCNA_03214 +1.1 7.0 hypothetical protein compare
CCNA_03515 +1.1 5.2 hypothetical protein compare
CCNA_00206 +1.1 3.3 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A compare
CCNA_02698 +1.1 7.0 Inosine-uridine nucleoside N-ribohydrolase compare
CCNA_03689 +1.1 7.6 alanine dehydrogenase compare
CCNA_02534 +1.1 2.2 hypothetical protein compare
CCNA_02737 +1.1 2.4 queuosine biosynthesis protein QueF compare
CCNA_00129 +1.1 5.4 hypothetical protein compare
CCNA_01405 +1.1 4.0 GIY-YIG domain protein compare
CCNA_00947 +1.1 8.1 flagellar hook protein FlgE compare
CCNA_03105 +1.1 5.4 DnaJ domain protein compare
CCNA_03043 +1.1 4.4 type IV pilin protein pilA compare
CCNA_02249 +1.1 3.8 conserved hypothetical cytosolic protein compare
CCNA_03688 +1.1 5.5 AsnC-family transcriptional regulator compare
CCNA_01575 +1.1 6.7 glucose / sorbosone dehydrogenase compare
CCNA_00803 +1.1 5.4 chemotaxis protein cheW compare
CCNA_01505 +1.1 2.8 hypothetical protein compare
CCNA_02151 +1.1 4.5 exodeoxyribonuclease VII small subunit compare
CCNA_00834 +1.1 5.2 flagellin FljM compare
CCNA_02750 +1.1 6.4 ABC transporter permease protein compare
CCNA_03893 +1.0 2.0 hypothetical protein compare
CCNA_03952 +1.0 4.8 hypothetical protein compare
CCNA_02687 +1.0 6.2 serine-pyruvate aminotransferase compare
CCNA_02243 +1.0 8.0 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01338 +1.0 5.7 glyoxalase family protein compare
CCNA_01596 +1.0 3.5 DNA helicase II compare
CCNA_00164 +1.0 6.8 O-antigen polymerase compare
CCNA_03936 +1.0 3.3 hypothetical protein compare
CCNA_03824 +1.0 5.9 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_03964 +1.0 2.7 hypothetical protein compare
CCNA_00255 +1.0 1.9 esterase compare
CCNA_01685 +1.0 2.9 hemimethylated DNA-binding protein yccV compare
CCNA_03156 +1.0 4.7 putative periplasmic protein compare
CCNA_02098 +1.0 7.1 molybdopterin-guanine dinucleotide biosynthesis protein A compare
CCNA_01057 +1.0 6.5 hypothetical protein compare
CCNA_03155 +1.0 6.9 PepSY-associated transmembrane protein compare
CCNA_01184 +1.0 5.8 MutT/nudix family hydrolase compare
CCNA_01415 +1.0 7.3 methyltransferase compare
CCNA_01453 +1.0 2.7 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in nitrogen source experiments

For nitrogen source L-Proline across organisms