Experiment set1IT089 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Paraquat dichloride 0.032 mg/mL

200 most important genes:

  gene name fitness t score description  
AO353_12880 -4.7 -3.3 ADP-heptose--LPS heptosyltransferase compare
AO353_07800 -3.9 -3.8 transcriptional repressor BetI compare
AO353_09315 -3.8 -8.0 LysR family transcriptional regulator compare
AO353_13960 -3.6 -9.5 ferredoxin-NADP reductase conserved
AO353_20565 -3.4 -2.1 tRNA-Ala compare
AO353_19605 -3.3 -2.3 hypothetical protein compare
AO353_15830 -2.9 -3.0 transcriptional regulator compare
AO353_09190 -2.9 -6.8 MFS transporter conserved
AO353_09060 -2.9 -2.8 hypothetical protein compare
AO353_26045 -2.9 -2.0 hypothetical protein compare
AO353_03585 -2.8 -3.3 ATP-dependent DNA helicase RuvA compare
AO353_15785 -2.8 -6.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_06585 -2.8 -5.9 hypothetical protein compare
AO353_02005 -2.7 -2.6 hypothetical protein compare
AO353_07810 -2.7 -10.9 choline dehydrogenase conserved
AO353_07805 -2.7 -7.8 betaine-aldehyde dehydrogenase compare
AO353_20865 -2.7 -2.6 cold-shock protein compare
AO353_09950 -2.6 -4.7 aspartate ammonia-lyase compare
AO353_11915 -2.6 -6.7 agmatine deiminase compare
AO353_03515 -2.6 -2.5 cold-shock protein compare
AO353_13100 -2.6 -1.8 GTPase RsgA compare
AO353_23405 -2.6 -2.5 hypothetical protein compare
AO353_14485 -2.5 -1.4 pseudouridine synthase compare
AO353_00310 -2.5 -7.5 transaldolase compare
AO353_12950 -2.5 -7.1 polymerase compare
AO353_15170 -2.5 -2.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_08910 -2.4 -2.3 hypothetical protein compare
AO353_02000 -2.3 -3.9 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_02250 -2.3 -3.1 chorismate synthase compare
AO353_21455 -2.3 -2.5 cation:proton antiporter compare
AO353_22520 -2.2 -2.4 hypothetical protein compare
AO353_10885 -2.2 -6.0 metal ABC transporter permease compare
AO353_27675 -2.2 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_06040 -2.2 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_10440 -2.1 -5.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_09235 -2.1 -6.7 phosphoglucomutase compare
AO353_10670 -2.1 -6.1 shikimate dehydrogenase compare
AO353_12935 -2.1 -2.9 glycosyltransferase compare
AO353_19295 -2.1 -1.6 hypothetical protein compare
AO353_05690 -2.1 -3.2 SsrA-binding protein compare
AO353_01915 -2.1 -1.4 GlcG protein compare
AO353_19090 -2.1 -2.4 MarR family transcriptional regulator compare
AO353_00115 -2.1 -2.8 hypothetical protein compare
AO353_07315 -2.1 -2.0 rRNA methyltransferase compare
AO353_04340 -2.0 -2.5 hypothetical protein compare
AO353_13140 -2.0 -4.6 tRNA dimethylallyltransferase compare
AO353_15385 -2.0 -3.0 hypothetical protein compare
AO353_27500 -2.0 -2.3 hypothetical protein compare
AO353_12045 -2.0 -4.2 iron transporter compare
AO353_03360 -2.0 -6.8 glucose-6-phosphate dehydrogenase compare
AO353_02975 -1.9 -3.2 aspartate kinase compare
AO353_09000 -1.9 -4.4 argininosuccinate lyase compare
AO353_12420 -1.9 -2.5 predicted FeS cluster maintenance protein (from data) compare
AO353_20175 -1.9 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_03580 -1.9 -2.8 ATP-dependent DNA helicase RuvB compare
AO353_18780 -1.8 -5.5 cobyrinic acid a,c-diamide synthase compare
AO353_18715 -1.8 -1.4 histidine kinase compare
AO353_22800 -1.8 -2.9 sulfite reductase compare
AO353_08130 -1.8 -2.4 uracil phosphoribosyltransferase compare
AO353_10445 -1.8 -1.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_02710 -1.8 -9.1 (p)ppGpp synthetase compare
AO353_12940 -1.8 -4.9 glycosyl transferase compare
AO353_23245 -1.8 -2.6 DNA-3-methyladenine glycosylase compare
AO353_02100 -1.8 -2.8 phosphoglycolate phosphatase compare
AO353_06050 -1.7 -4.7 exodeoxyribonuclease V subunit gamma compare
AO353_28425 -1.7 -3.1 TetR family transcriptional regulator compare
AO353_01595 -1.7 -1.9 Flp pilus assembly protein CpaB compare
AO353_10510 -1.7 -1.7 benzoate transporter compare
AO353_27130 -1.7 -1.9 hypothetical protein compare
AO353_21830 -1.7 -10.2 chemotaxis protein CheY compare
AO353_13405 -1.7 -2.6 urease accessory protein UreF compare
AO353_00825 -1.7 -2.8 porin compare
AO353_09015 -1.7 -2.7 DNA-binding protein compare
AO353_21440 -1.6 -2.9 hypothetical protein compare
AO353_13925 -1.6 -2.4 XRE family transcriptional regulator compare
AO353_02735 -1.6 -11.4 chemotaxis protein CheY compare
AO353_09720 -1.6 -1.2 hypothetical protein compare
AO353_23955 -1.6 -3.3 RND transporter compare
AO353_26050 -1.6 -2.5 hypothetical protein compare
AO353_04175 -1.6 -3.7 glycerol uptake facilitator GlpF compare
AO353_01190 -1.6 -2.0 hypothetical protein compare
AO353_26080 -1.6 -2.4 hypothetical protein compare
AO353_03715 -1.6 -2.2 H-NS histone compare
AO353_18540 -1.6 -2.8 pseudouridine synthase compare
AO353_25355 -1.5 -2.5 hypothetical protein compare
AO353_02195 -1.5 -3.6 spermidine synthase compare
AO353_04355 -1.5 -2.0 homoserine dehydrogenase compare
AO353_05625 -1.5 -1.4 transcription elongation factor GreA compare
AO353_12790 -1.5 -1.4 hypothetical protein compare
AO353_06495 -1.5 -3.7 gamma-glutamyl phosphate reductase compare
AO353_10890 -1.5 -4.0 methionine ABC transporter ATP-binding protein compare
AO353_13220 -1.5 -4.6 hypothetical protein compare
AO353_08365 -1.5 -5.0 L-cystine transporter tcyP compare
AO353_06045 -1.5 -5.4 exodeoxyribonuclease V subunit beta compare
AO353_20535 -1.5 -2.6 hypothetical protein compare
AO353_04190 -1.5 -2.0 glycerol-3-phosphate dehydrogenase compare
AO353_09050 -1.5 -3.0 recombinase XerC compare
AO353_03275 -1.5 -1.4 LysR family transcriptional regulator compare
AO353_21625 -1.4 -1.9 Fe/S biogenesis protein NfuA compare
AO353_26220 -1.4 -2.2 hypothetical protein compare
AO353_13155 -1.4 -3.0 hypothetical protein compare
AO353_14420 -1.4 -2.9 molecular chaperone DnaK compare
AO353_04810 -1.4 -1.5 hypothetical protein compare
AO353_00660 -1.4 -2.3 transcriptional regulator compare
AO353_24760 -1.4 -2.8 glutamine amidotransferase compare
AO353_12350 -1.4 -2.1 preprotein translocase compare
AO353_12650 -1.4 -1.1 hypothetical protein compare
AO353_19770 -1.4 -1.5 peptidase compare
AO353_11850 -1.4 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14220 -1.4 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_28945 -1.4 -1.6 potassium-transporting ATPase subunit B compare
AO353_02995 -1.3 -5.0 succinylglutamate desuccinylase compare
AO353_22700 -1.3 -1.5 LexA family transcriptional regulator compare
AO353_07515 -1.3 -1.6 transporter compare
AO353_28935 -1.3 -1.9 ATPase compare
AO353_05240 -1.3 -1.6 rod shape-determining protein MreD compare
AO353_14030 -1.3 -7.1 ABC transporter ATP-binding protein compare
AO353_02920 -1.3 -3.0 serine recombinase compare
AO353_09240 -1.3 -2.6 acetylglutamate kinase compare
AO353_09045 -1.3 -1.2 hypothetical protein compare
AO353_02070 -1.3 -4.5 prephenate dehydratase compare
AO353_15410 -1.3 -1.3 hypothetical protein compare
AO353_13160 -1.3 -1.9 membrane protease HflC compare
AO353_07155 -1.3 -4.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_24360 -1.2 -3.7 TetR family transcriptional regulator compare
AO353_15270 -1.2 -2.9 phospholipid-binding protein compare
AO353_20840 -1.2 -1.8 ribose pyranase compare
AO353_06415 -1.2 -3.1 hypothetical protein compare
AO353_12125 -1.2 -4.4 glutaredoxin compare
AO353_00835 -1.2 -4.2 transporter compare
AO353_05010 -1.2 -1.0 HopJ type III effector protein compare
AO353_00355 -1.2 -2.0 transcriptional regulator compare
AO353_09250 -1.2 -2.0 exodeoxyribonuclease III compare
AO353_03590 -1.2 -2.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_01015 -1.2 -1.4 hypothetical protein compare
AO353_03605 -1.2 -0.9 FmdB family transcriptional regulator compare
AO353_10725 -1.2 -1.1 dodecin flavoprotein compare
AO353_17100 -1.2 -1.9 hypothetical protein compare
AO353_09705 -1.2 -1.3 hypothetical protein compare
AO353_11165 -1.2 -5.6 hypothetical protein compare
AO353_16955 -1.2 -3.5 succinylglutamate desuccinylase compare
AO353_15480 -1.2 -1.6 hypothetical protein compare
AO353_09840 -1.1 -3.3 chorismate--pyruvate lyase compare
AO353_18425 -1.1 -2.7 hypothetical protein compare
AO353_19240 -1.1 -3.9 pseudouridine synthase compare
AO353_06455 -1.1 -1.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_02075 -1.1 -6.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08835 -1.1 -5.7 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_14370 -1.1 -3.9 glucose-6-phosphate isomerase compare
AO353_16845 -1.1 -5.6 LysR family transcriptional regulator compare
AO353_03775 -1.1 -4.7 pyruvate kinase compare
AO353_11655 -1.1 -3.5 SfnB family sulfur acquisition oxidoreductase compare
AO353_19360 -1.1 -1.5 peroxiredoxin compare
AO353_06850 -1.1 -3.1 MFS transporter compare
AO353_16940 -1.1 -3.6 deoxycytidine triphosphate deaminase compare
AO353_05205 -1.1 -6.8 peptidase PmbA compare
AO353_02135 -1.1 -5.4 hypothetical protein compare
AO353_03010 -1.1 -3.9 succinylglutamate-semialdehyde dehydrogenase compare
AO353_15820 -1.1 -4.0 RNA methyltransferase compare
AO353_27535 -1.1 -2.3 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_09260 -1.1 -3.9 ribonuclease PH compare
AO353_27950 -1.1 -1.5 hypothetical protein compare
AO353_09065 -1.1 -3.9 hypothetical protein compare
AO353_16805 -1.1 -3.7 recombinase RecA compare
AO353_03510 -1.1 -1.7 glycine cleavage system protein T compare
AO353_08005 -1.1 -3.2 thioesterase compare
AO353_09560 -1.1 -1.2 type VI secretion protein compare
AO353_22955 -1.1 -1.8 tRNA hydroxylase compare
AO353_25700 -1.1 -1.7 hypothetical protein compare
AO353_10495 -1.1 -2.0 serine hydroxymethyltransferase compare
AO353_25925 -1.1 -1.5 hypothetical protein compare
AO353_03410 -1.0 -1.3 chemotaxis protein CheY compare
AO353_02570 -1.0 -1.5 hypothetical protein compare
AO353_13840 -1.0 -2.3 histidine kinase compare
AO353_13200 -1.0 -5.9 exoribonuclease R compare
AO353_03615 -1.0 -2.3 cold-shock protein compare
AO353_17995 -1.0 -3.9 hypothetical protein compare
AO353_08620 -1.0 -1.4 hypothetical protein compare
AO353_09360 -1.0 -3.4 hypothetical protein compare
AO353_04490 -1.0 -5.1 murein transglycosylase compare
AO353_14740 -1.0 -2.3 GTP-binding protein compare
AO353_24060 -1.0 -4.5 AcrR family transcriptional regulator compare
AO353_18130 -1.0 -1.6 hypothetical protein compare
AO353_21425 -1.0 -2.4 hypothetical protein compare
AO353_04475 -1.0 -2.1 hypothetical protein compare
AO353_07075 -1.0 -2.9 elongation factor Tu compare
AO353_29270 -1.0 -2.1 type VI secretion system protein compare
AO353_10085 -1.0 -2.2 pyridoxamine kinase compare
AO353_27585 -1.0 -1.6 DNA repair protein compare
AO353_01355 -1.0 -4.4 3-oxoacyl-ACP synthase compare
AO353_09565 -1.0 -3.9 type VI secretion protein compare
AO353_15985 -1.0 -3.4 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
AO353_12710 -1.0 -1.1 thioredoxin compare
AO353_08880 -1.0 -1.8 exopolyphosphatase compare
AO353_27930 -1.0 -2.6 LysR family transcriptional regulator compare
AO353_24745 -1.0 -1.2 hypothetical protein compare
AO353_18980 -1.0 -2.3 DoxX family protein compare
AO353_20095 -1.0 -2.6 histidine kinase compare
AO353_05125 -1.0 -2.9 BolA family transcriptional regulator compare
AO353_20380 -1.0 -4.6 acyl-CoA dehydrogenase compare


Specific Phenotypes

For 11 genes in this experiment

For stress Paraquat dichloride in Pseudomonas fluorescens FW300-N2E3

For stress Paraquat dichloride across organisms