Experiment set1IT089 for Pedobacter sp. GW460-11-11-14-LB5
R2A with Aluminum chloride hydrate 1 mM
Group: stressMedia: R2A + Aluminum chloride hydrate (1 mM)
Culturing: Pedo557_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.8 generations
By: Adam on 17-May-17
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1757 B1
Specific Phenotypes
For 14 genes in this experiment
For stress Aluminum chloride hydrate in Pedobacter sp. GW460-11-11-14-LB5
For stress Aluminum chloride hydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Multidrug Resistance Efflux Pumps | 2 |
| Cobalt-zinc-cadmium resistance | 1 |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) | 1 |
| Peptidoglycan Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Peptidoglycan biosynthesis
- Fructose and mannose metabolism
- Purine metabolism
- Pyrimidine metabolism
- gamma-Hexachlorocyclohexane degradation
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- High-mannose type N-glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Keratan sulfate biosynthesis
- Lipopolysaccharide biosynthesis
- Glycerolipid metabolism
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Folate biosynthesis
- Carotenoid biosynthesis - General
- Zeatin biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Flavone and flavonol biosynthesis
- Drug metabolism - other enzymes
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pyrimidine ribonucleosides salvage I | 3 | 3 | 2 |
| di-trans,poly-cis-undecaprenyl phosphate biosynthesis | 2 | 2 | 1 |
| diethylphosphate degradation | 2 | 1 | 1 |
| polyisoprenoid biosynthesis (E. coli) | 5 | 5 | 1 |
| superpathway of pyrimidine ribonucleosides salvage | 10 | 9 | 2 |
| nucleoside and nucleotide degradation (archaea) | 10 | 4 | 1 |