Experiment set1IT089 for Pantoea sp. MT58

Compare to:

Potassium dichromate 2 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -5.6 -4.6 Tol-Pal system protein TolB compare
IAI47_15635 -5.3 -5.4 RNA polymerase-binding protein DksA compare
IAI47_17220 -5.1 -31.1 glutamate synthase large subunit compare
IAI47_16350 -5.1 -11.9 phosphoserine phosphatase compare
IAI47_09175 -5.1 -11.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_01030 -4.9 -21.2 branched-chain amino acid transaminase compare
IAI47_16205 -4.9 -11.4 threonine synthase compare
IAI47_07070 -4.8 -10.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_10520 -4.8 -3.3 pyridoxamine 5'-phosphate oxidase compare
IAI47_16005 -4.7 -14.6 3-isopropylmalate dehydrogenase compare
IAI47_01035 -4.7 -23.8 dihydroxy-acid dehydratase compare
IAI47_01050 -4.7 -22.8 ketol-acid reductoisomerase compare
IAI47_09190 -4.6 -13.4 anthranilate synthase component 1 compare
IAI47_07090 -4.6 -13.9 histidinol dehydrogenase compare
IAI47_00920 -4.6 -20.4 argininosuccinate lyase compare
IAI47_00915 -4.6 -19.2 argininosuccinate synthase compare
IAI47_17225 -4.5 -23.4 sulfite reductase subunit alpha compare
IAI47_09180 -4.5 -13.6 anthranilate phosphoribosyltransferase compare
IAI47_07085 -4.4 -17.7 histidinol-phosphate transaminase compare
IAI47_07065 -4.4 -14.2 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16115 -4.4 -25.0 carbamoyl-phosphate synthase large subunit compare
IAI47_03725 -4.4 -12.7 phosphoglycerate dehydrogenase compare
IAI47_09165 -4.4 -9.3 tryptophan synthase subunit alpha compare
IAI47_07165 -4.3 -3.0 exodeoxyribonuclease I compare
IAI47_16120 -4.3 -15.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_18015 -4.3 -20.7 homoserine O-succinyltransferase compare
IAI47_07080 -4.3 -13.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_18040 -4.3 -22.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_05275 -4.3 -8.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_16830 -4.3 -19.0 ornithine carbamoyltransferase compare
IAI47_16210 -4.2 -14.3 homoserine kinase compare
IAI47_09170 -4.2 -13.9 tryptophan synthase subunit beta compare
IAI47_13900 -4.2 -20.1 asparagine synthase B compare
IAI47_03820 -4.2 -4.1 site-specific tyrosine recombinase XerD compare
IAI47_07060 -4.2 -14.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_00895 -4.1 -23.2 phosphoenolpyruvate carboxylase compare
IAI47_07075 -4.1 -11.6 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_00880 -4.1 -18.6 cystathionine gamma-synthase compare
IAI47_01040 -4.1 -14.9 threonine ammonia-lyase, biosynthetic compare
IAI47_16215 -4.1 -21.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_00905 -4.1 -14.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_00780 -4.1 -6.2 6-phosphofructokinase compare
IAI47_13770 -4.0 -13.6 citrate synthase compare
IAI47_09275 -4.0 -12.1 orotidine-5'-phosphate decarboxylase compare
IAI47_03860 -3.9 -16.4 diaminopimelate decarboxylase compare
IAI47_15115 -3.9 -11.9 glutamate-5-semialdehyde dehydrogenase compare
IAI47_15120 -3.9 -8.4 glutamate 5-kinase compare
IAI47_12865 -3.9 -13.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_16015 -3.8 -8.1 3-isopropylmalate dehydratase small subunit compare
IAI47_17185 -3.8 -5.8 RNA polymerase factor sigma-54 compare
IAI47_06235 -3.8 -11.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_05070 -3.8 -1.6 outer membrane protein assembly factor BamB compare
IAI47_16010 -3.8 -18.5 3-isopropylmalate dehydratase large subunit compare
IAI47_09185 -3.7 -7.1 glutamine amidotransferase compare
IAI47_05180 -3.7 -16.3 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_06275 -3.7 -20.2 amidophosphoribosyltransferase compare
IAI47_03975 -3.7 -17.7 amino-acid N-acetyltransferase compare
IAI47_13695 -3.7 -1.5 colicin uptake protein TolR compare
IAI47_00910 -3.7 -12.3 acetylglutamate kinase compare
IAI47_07095 -3.7 -10.9 ATP phosphoribosyltransferase compare
IAI47_12705 -3.6 -15.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_16000 -3.6 -17.7 2-isopropylmalate synthase compare
IAI47_04895 -3.5 -5.7 pyridoxine 5'-phosphate synthase compare
IAI47_04160 -3.5 -14.3 phosphoadenylyl-sulfate reductase compare
IAI47_14350 -3.4 -8.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_14945 -3.4 -4.7 pyrroline-5-carboxylate reductase compare
IAI47_16080 -3.4 -10.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_12215 -3.4 -13.5 dihydroorotase compare
IAI47_08085 -3.4 -6.6 helix-turn-helix domain-containing protein compare
IAI47_12915 -3.3 -13.9 leucine-responsive transcriptional regulator Lrp compare
IAI47_04930 -3.3 -19.8 phosphoribosylformylglycinamidine synthase compare
IAI47_17965 -3.2 -16.3 glucose-6-phosphate isomerase compare
IAI47_15605 -3.2 -2.6 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_00600 -3.1 -12.6 orotate phosphoribosyltransferase compare
IAI47_17020 -3.1 -5.5 30S ribosome-binding factor RbfA compare
IAI47_18045 -3.0 -11.2 phosphoribosylamine--glycine ligase compare
IAI47_00890 -3.0 -12.1 methylenetetrahydrofolate reductase compare
IAI47_02695 -3.0 -12.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_00875 -2.9 -2.5 met regulon transcriptional regulator MetJ compare
IAI47_04410 -2.9 -13.5 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_16870 -2.8 -8.6 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_18530 -2.8 -2.9 thioredoxin TrxA compare
IAI47_18400 -2.7 -3.6 tyrosine recombinase XerC compare
IAI47_16860 -2.7 -13.6 aspartate carbamoyltransferase compare
IAI47_15970 -2.7 -3.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_04120 -2.6 -17.1 GTP diphosphokinase compare
IAI47_00870 -2.6 -1.5 50S ribosomal protein L31 compare
IAI47_06245 -2.4 -5.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_09580 -2.4 -5.3 FNR family transcription factor compare
IAI47_05440 -2.4 -11.5 cysteine synthase A compare
IAI47_13690 -2.3 -1.3 cell envelope integrity protein TolA compare
IAI47_02400 -2.2 -1.8 YhdT family protein compare
IAI47_06980 -2.2 -4.9 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_00460 -2.2 -2.1 glutamate--ammonia ligase compare
IAI47_07905 -2.2 -1.5 Arc family DNA-binding protein compare
IAI47_00455 -2.1 -10.1 nitrogen regulation protein NR(II) compare
IAI47_11760 -2.1 -2.5 TonB-dependent siderophore receptor compare
IAI47_09240 -2.1 -3.5 HTH-type transcriptional regulator CysB compare
IAI47_18830 -2.1 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_16085 -2.0 -1.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_09010 -2.0 -8.3 formyltetrahydrofolate deformylase compare
IAI47_13050 -1.9 -5.0 YbjN domain-containing protein compare
IAI47_14355 -1.9 -8.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_00785 -1.8 -12.7 sulfate ABC transporter substrate-binding protein compare
IAI47_13180 -1.8 -6.1 manganese-binding transcriptional regulator MntR compare
IAI47_03855 -1.8 -8.0 LysR family transcriptional regulator compare
IAI47_05155 -1.7 -13.4 polyphosphate kinase 1 compare
IAI47_09245 -1.7 -4.9 YmiA family putative membrane protein compare
IAI47_12885 -1.7 -7.9 pyruvate formate lyase 1-activating protein compare
IAI47_11475 -1.6 -1.7 hypothetical protein compare
IAI47_00900 -1.6 -8.3 acetylornithine deacetylase compare
IAI47_12880 -1.6 -11.9 formate C-acetyltransferase compare
IAI47_00465 -1.6 -2.1 ribosome-dependent GTPase TypA compare
IAI47_04190 -1.6 -5.0 adenylyl-sulfate kinase compare
IAI47_18145 -1.6 -2.1 elongation factor Tu compare
IAI47_11450 -1.5 -5.5 ankyrin repeat domain-containing protein compare
IAI47_04155 -1.5 -9.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_10840 -1.5 -4.8 pyruvate kinase PykF compare
IAI47_14730 -1.5 -1.7 exodeoxyribonuclease VII small subunit compare
IAI47_05425 -1.5 -4.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_13765 -1.4 -2.3 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_01365 -1.4 -1.6 inorganic phosphate transporter PitA compare
IAI47_00450 -1.4 -8.4 nitrogen regulation protein NR(I) compare
IAI47_17000 -1.4 -8.8 lipoprotein NlpI compare
IAI47_00300 -1.4 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_04185 -1.4 -9.1 sulfate adenylyltransferase subunit CysN compare
IAI47_17215 -1.3 -1.2 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_15810 -1.3 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_06355 -1.3 -7.3 transcriptional regulator LrhA compare
IAI47_04150 -1.3 -8.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_01955 -1.3 -8.0 aspartate aminotransferase family protein compare
IAI47_04175 -1.3 -7.2 uroporphyrinogen-III C-methyltransferase compare
IAI47_03375 -1.3 -6.9 peptide chain release factor 3 compare
IAI47_01780 -1.3 -2.2 Fe-S biogenesis protein NfuA compare
IAI47_04180 -1.3 -7.1 sulfate adenylyltransferase subunit CysD compare
IAI47_13745 -1.2 -3.5 2-oxoglutarate dehydrogenase E1 component compare
IAI47_16220 -1.2 -3.6 thr operon leader peptide compare
IAI47_09360 -1.2 -1.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_12030 -1.2 -8.5 PTS glucose transporter subunit IIBC compare
IAI47_15595 -1.2 -1.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_04300 -1.2 -5.7 recombinase RecA compare
IAI47_00655 -1.2 -4.8 glycosyltransferase family 4 protein compare
IAI47_03685 -1.2 -6.5 erythrose-4-phosphate dehydrogenase compare
IAI47_05420 -1.2 -0.9 PTS glucose transporter subunit IIA compare
IAI47_12645 -1.2 -3.2 porin OmpA compare
IAI47_03610 -1.1 -3.1 YqgE/AlgH family protein compare
IAI47_08605 -1.1 -3.5 hypothetical protein compare
IAI47_09055 -1.1 -7.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07350 -1.1 -1.0 hypothetical protein compare
IAI47_00515 -1.1 -2.2 DNA-directed RNA polymerase subunit omega compare
IAI47_08705 -1.1 -7.7 carboxy terminal-processing peptidase compare
IAI47_06320 -1.1 -4.8 phosphate acetyltransferase compare
IAI47_05465 -1.0 -3.7 bile acid:sodium symporter compare
IAI47_14940 -1.0 -2.3 YaiI/YqxD family protein compare
IAI47_14555 -1.0 -3.4 hemolysin expression modulator Hha compare
IAI47_06420 -1.0 -2.6 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_21470 -1.0 -3.9 DUF2778 domain-containing protein compare
IAI47_00755 -1.0 -7.2 envelope stress sensor histidine kinase CpxA compare
IAI47_17005 -1.0 -5.1 polyribonucleotide nucleotidyltransferase compare
IAI47_08445 -1.0 -1.2 Holliday junction branch migration protein RuvA compare
IAI47_13475 -1.0 -2.1 molybdopterin synthase catalytic subunit MoaE compare
IAI47_04505 -1.0 -4.4 transcriptional repressor MprA compare
IAI47_04270 -1.0 -5.4 respiratory nitrate reductase subunit gamma compare
IAI47_05405 -1.0 -4.4 cysteine synthase CysM compare
IAI47_13480 -1.0 -2.4 molybdopterin synthase sulfur carrier subunit compare
IAI47_07020 -1.0 -0.9 hypothetical protein compare
IAI47_04835 -1.0 -4.4 ATP-dependent RNA helicase SrmB compare
IAI47_09305 -1.0 -2.0 cyclic di-GMP phosphodiesterase compare
IAI47_16095 -0.9 -2.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_11310 -0.9 -2.3 redox-regulated ATPase YchF compare
IAI47_00500 -0.9 -6.8 ATP-dependent DNA helicase RecG compare
IAI47_04400 -0.9 -4.1 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_19035 -0.9 -1.7 transcriptional regulator compare
IAI47_12930 -0.9 -2.5 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_17580 -0.9 -6.0 hypothetical protein compare
IAI47_07010 -0.9 -1.9 ABC transporter permease compare
IAI47_05525 -0.9 -1.2 tRNA-Ala compare
IAI47_21035 -0.9 -2.5 TetR/AcrR family transcriptional regulator compare
IAI47_00410 -0.9 -6.7 molybdenum cofactor guanylyltransferase MobA compare
IAI47_18315 -0.9 -3.4 HTH-type transcriptional regulator MetR compare
IAI47_03595 -0.9 -4.3 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_03135 -0.9 -4.1 outer membrane channel protein TolC compare
IAI47_04870 -0.9 -3.1 elongation factor 4 compare
IAI47_12175 -0.8 -1.1 anti-sigma-28 factor FlgM compare
IAI47_17120 -0.8 -1.8 BolA family iron metabolism protein IbaG compare
IAI47_18055 -0.8 -3.4 DNA-binding protein HU-alpha compare
IAI47_05195 -0.8 -1.6 DnaA inactivator Hda compare
IAI47_06055 -0.8 -3.0 tRNA-Arg compare
IAI47_05520 -0.8 -1.2 tRNA-Ala compare
IAI47_13950 -0.8 -0.7 PhoH family protein compare
IAI47_06325 -0.8 -3.5 acetate kinase compare
IAI47_21655 -0.8 -0.6 LacI family DNA-binding transcriptional regulator compare
IAI47_01475 -0.8 -3.9 MurR/RpiR family transcriptional regulator compare
IAI47_15540 -0.8 -4.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_03615 -0.8 -4.1 glutathione synthase compare
IAI47_08040 -0.7 -1.9 hypothetical protein compare
IAI47_08165 -0.7 -3.6 flagella biosynthesis regulatory protein FliZ compare
IAI47_04265 -0.7 -4.3 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_09720 -0.7 -4.5 TetR/AcrR family transcriptional regulator compare
IAI47_00110 -0.7 -3.7 glyoxylate/hydroxypyruvate reductase GhrB compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Potassium dichromate across organisms