Experiment set1IT089 for Dyella japonica UNC79MFTsu3.2

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS10475 -7.0 -4.9 shikimate kinase compare
ABZR86_RS09635 -6.6 -4.6 phosphoglycerate dehydrogenase compare
ABZR86_RS15945 -6.5 -4.5 dihydroxy-acid dehydratase compare
ABZR86_RS06720 -6.4 -4.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS20980 -6.2 -3.6 hypothetical protein compare
ABZR86_RS02230 -6.1 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS12070 -5.9 -5.9 anthranilate phosphoribosyltransferase compare
ABZR86_RS15950 -5.9 -4.1 3-isopropylmalate dehydrogenase compare
ABZR86_RS14985 -5.8 -8.0 shikimate dehydrogenase compare
ABZR86_RS12065 -5.8 -4.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS08705 -5.5 -8.4 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS11105 -5.4 -4.2 Fructokinase (EC 2.7.1.4) (from data) conserved
ABZR86_RS17085 -5.4 -7.8 type II 3-dehydroquinate dehydratase compare
ABZR86_RS06630 -5.3 -3.7 phosphopyruvate hydratase compare
ABZR86_RS16795 -5.2 -17.5 glutamate synthase large subunit compare
ABZR86_RS10215 -5.2 -6.3 inositol monophosphatase family protein compare
ABZR86_RS19025 -5.2 -3.6 homoserine O-succinyltransferase compare
ABZR86_RS08905 -5.1 -8.5 carbonate dehydratase compare
ABZR86_RS19560 -5.1 -5.1 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS10425 -5.1 -3.5 pyrroline-5-carboxylate reductase compare
ABZR86_RS18675 -5.0 -3.5 phosphoglycerate kinase compare
ABZR86_RS11555 -5.0 -11.9 phosphoenolpyruvate carboxylase compare
ABZR86_RS02815 -5.0 -15.1 asparagine synthase B compare
ABZR86_RS02225 -5.0 -6.8 prephenate dehydratase compare
ABZR86_RS11570 -5.0 -10.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS12435 -4.8 -11.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS06715 -4.7 -7.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS15960 -4.7 -9.9 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS14100 -4.7 -5.6 DNA adenine methylase compare
ABZR86_RS15975 -4.7 -10.3 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS08715 -4.7 -13.1 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS08000 -4.7 -12.1 tryptophan synthase subunit beta compare
ABZR86_RS16800 -4.7 -14.1 FAD-dependent oxidoreductase compare
ABZR86_RS15935 -4.6 -11.4 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS06725 -4.6 -7.7 histidinol-phosphate transaminase compare
ABZR86_RS06735 -4.6 -4.5 ATP phosphoribosyltransferase compare
ABZR86_RS08700 -4.6 -4.4 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS02285 -4.5 -5.8 DUF1643 domain-containing protein compare
ABZR86_RS00830 -4.5 -11.3 glucose-6-phosphate isomerase compare
ABZR86_RS19860 -4.5 -11.9 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS08040 -4.5 -3.1 chorismate synthase compare
ABZR86_RS05875 -4.4 -5.9 cysteine synthase A compare
ABZR86_RS06730 -4.3 -7.3 histidinol dehydrogenase compare
ABZR86_RS08010 -4.3 -4.3 phosphoribosylanthranilate isomerase compare
ABZR86_RS15980 -4.2 -4.5 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS10480 -4.2 -4.1 3-dehydroquinate synthase compare
ABZR86_RS08250 -4.2 -2.9 phosphate signaling complex protein PhoU compare
ABZR86_RS06700 -4.1 -6.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS09075 -4.1 -1.4 NrsF family protein compare
ABZR86_RS06775 -4.1 -15.1 amidophosphoribosyltransferase compare
ABZR86_RS15940 -4.1 -8.5 ketol-acid reductoisomerase compare
ABZR86_RS15305 -4.0 -6.1 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS05885 -4.0 -9.5 LysR substrate-binding domain-containing protein compare
ABZR86_RS08730 -4.0 -8.0 N-acetylornithine carbamoyltransferase compare
ABZR86_RS16770 -3.9 -1.4 phage holin family protein compare
ABZR86_RS18355 -3.9 -1.4 PepSY domain-containing protein compare
ABZR86_RS12605 -3.9 -2.7 thioredoxin TrxA compare
ABZR86_RS15970 -3.8 -6.8 2-isopropylmalate synthase compare
ABZR86_RS15965 -3.7 -6.7 branched-chain amino acid transaminase compare
ABZR86_RS13515 -3.7 -6.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS12215 -3.7 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS21480 -3.7 -6.6 arginase family protein compare
ABZR86_RS12180 -3.6 -10.8 anthranilate synthase component I compare
ABZR86_RS11825 -3.6 -2.5 citrate synthase compare
ABZR86_RS14690 -3.6 -6.2 phosphogluconate dehydratase compare
ABZR86_RS13850 -3.6 -5.8 phosphoribosylamine--glycine ligase compare
ABZR86_RS09660 -3.6 -3.4 MerR family transcriptional regulator compare
ABZR86_RS18815 -3.5 -4.2 FAD-binding protein compare
ABZR86_RS11095 -3.5 -6.7 LacI family DNA-binding transcriptional regulator compare
ABZR86_RS05895 -3.4 -9.1 phosphoadenylyl-sulfate reductase compare
ABZR86_RS15315 -3.4 -9.3 phenylalanine 4-monooxygenase compare
ABZR86_RS05890 -3.4 -10.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS10715 -3.4 -11.8 serine hydroxymethyltransferase compare
ABZR86_RS02220 -3.4 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS08710 -3.4 -4.6 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS05905 -3.4 -6.6 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS11100 -3.3 -7.5 fructose porter FruP (from data) conserved
ABZR86_RS14700 -3.3 -5.5 glucose-6-phosphate dehydrogenase compare
ABZR86_RS05880 -3.3 -6.5 siroheme synthase CysG compare
ABZR86_RS18615 -3.3 -2.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS02795 -3.2 -1.6 phosphoglycerate mutase compare
ABZR86_RS08340 -3.2 -5.2 adenylosuccinate synthase compare
ABZR86_RS10830 -3.2 -2.3 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS06400 -3.2 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR86_RS15460 -3.1 -2.1 type I glutamate--ammonia ligase compare
ABZR86_RS10205 -3.1 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS08695 -3.1 -8.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS13055 -3.1 -6.9 glucokinase compare
ABZR86_RS19865 -3.1 -2.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS07995 -3.0 -5.0 tryptophan synthase subunit alpha compare
ABZR86_RS09840 -3.0 -1.0 Trm112 family protein compare
ABZR86_RS18875 -3.0 -5.7 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS21575 -3.0 -6.8 [protein-PII] uridylyltransferase compare
ABZR86_RS20835 -2.9 -3.4 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABZR86_RS02880 -2.9 -8.1 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS06710 -2.9 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS19800 -2.9 -6.6 RNase adapter RapZ compare
ABZR86_RS21435 -2.9 -5.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS15020 -2.9 -2.3 DUF484 family protein compare
ABZR86_RS05550 -2.9 -2.0 lipopolysaccharide assembly protein LapB compare
ABZR86_RS06355 -2.9 -4.3 folate-binding protein YgfZ compare
ABZR86_RS06260 -2.8 -4.2 MBL fold metallo-hydrolase compare
ABZR86_RS07585 -2.8 -5.5 homocysteine S-methyltransferase family protein compare
ABZR86_RS06740 -2.8 -2.8 YerC/YecD family TrpR-related protein compare
ABZR86_RS06000 -2.8 -4.9 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS12005 -2.8 -1.6 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS08015 -2.8 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS07885 -2.8 -6.5 cation diffusion facilitator family transporter compare
ABZR86_RS20775 -2.7 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS15955 -2.7 -4.4 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS06705 -2.7 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS08305 -2.7 -10.6 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS02890 -2.7 -5.2 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS18360 -2.7 -8.0 response regulator transcription factor compare
ABZR86_RS20150 -2.6 -1.7 PilZ domain-containing protein compare
ABZR86_RS18450 -2.6 -1.8 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS12835 -2.6 -4.7 DedA family protein compare
ABZR86_RS15695 -2.6 -1.2 23S ribosomal RNA compare
ABZR86_RS15330 -2.6 -6.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS19910 -2.5 -2.2 inorganic phosphate transporter compare
ABZR86_RS08325 -2.5 -3.3 helix-turn-helix domain-containing protein compare
ABZR86_RS02885 -2.5 -7.0 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS18960 -2.5 -5.6 TetR/AcrR family transcriptional regulator compare
ABZR86_RS09145 -2.5 -1.5 hypothetical protein compare
ABZR86_RS19805 -2.5 -4.7 HPr(Ser) kinase/phosphatase compare
ABZR86_RS19030 -2.5 -5.3 cystathionine gamma-synthase compare
ABZR86_RS19235 -2.5 -2.9 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS18830 -2.4 -6.2 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS13380 -2.4 -1.5 Sec-independent protein translocase subunit TatA compare
ABZR86_RS21020 -2.4 -4.9 ATP-binding protein compare
ABZR86_RS00285 -2.4 -2.0 hypothetical protein compare
ABZR86_RS07590 -2.4 -9.1 methionine synthase compare
ABZR86_RS08355 -2.3 -3.8 FtsH protease activity modulator HflK compare
ABZR86_RS07280 -2.3 -3.0 methyltransferase domain-containing protein compare
ABZR86_RS05900 -2.3 -6.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS19795 -2.3 -5.9 PTS sugar transporter subunit IIA compare
ABZR86_RS08680 -2.3 -5.1 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS15985 -2.2 -5.1 homoserine dehydrogenase compare
ABZR86_RS00685 -2.2 -1.7 carbon storage regulator CsrA compare
ABZR86_RS13880 -2.2 -2.2 peptide deformylase compare
ABZR86_RS09430 -2.2 -4.0 non-heme iron oxygenase ferredoxin subunit compare
ABZR86_RS11110 -2.2 -5.9 AGE family epimerase/isomerase conserved
ABZR86_RS04375 -2.1 -1.3 GNAT family N-acetyltransferase compare
ABZR86_RS05995 -2.1 -9.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS14870 -2.1 -1.0 AAA family ATPase compare
ABZR86_RS12930 -2.1 -7.7 cytochrome c oxidase subunit II compare
ABZR86_RS09885 -2.1 -1.4 trypsin-like peptidase domain-containing protein compare
ABZR86_RS07180 -2.1 -3.6 RNA polymerase sigma factor RpoE compare
ABZR86_RS18880 -2.0 -4.3 glycine cleavage system protein GcvH compare
ABZR86_RS09870 -2.0 -5.2 cytochrome c1 compare
ABZR86_RS03640 -2.0 -2.7 DUF488 family protein compare
ABZR86_RS04920 -2.0 -1.2 pentapeptide repeat-containing protein compare
ABZR86_RS06580 -2.0 -2.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS18480 -1.9 -12.3 homogentisate 1,2-dioxygenase compare
ABZR86_RS02185 -1.9 -6.1 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS10315 -1.9 -3.5 Imm42 family immunity protein compare
ABZR86_RS00670 -1.8 -1.5 hypothetical protein compare
ABZR86_RS12885 -1.8 -1.3 magnesium-translocating P-type ATPase compare
ABZR86_RS08135 -1.8 -1.2 hypothetical protein compare
ABZR86_RS12895 -1.8 -4.8 heme o synthase compare
ABZR86_RS13370 -1.8 -6.1 twin-arginine translocase subunit TatC compare
ABZR86_RS02320 -1.8 -2.6 hypothetical protein compare
ABZR86_RS16160 -1.8 -3.4 hypothetical protein compare
ABZR86_RS06590 -1.8 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS18465 -1.8 -3.3 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS04850 -1.8 -2.1 LytTR family DNA-binding domain-containing protein compare
ABZR86_RS00660 -1.8 -2.9 recombinase RecA compare
ABZR86_RS18780 -1.8 -1.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS13415 -1.7 -1.3 DUF1656 domain-containing protein compare
ABZR86_RS08350 -1.7 -3.5 protease modulator HflC compare
ABZR86_RS08685 -1.7 -2.1 glutamate 5-kinase compare
ABZR86_RS20605 -1.7 -1.3 FeoA family protein compare
ABZR86_RS21725 -1.7 -7.5 YhdP family protein compare
ABZR86_RS19585 -1.7 -1.6 GNAT family N-acetyltransferase compare
ABZR86_RS06190 -1.7 -2.3 YceD family protein compare
ABZR86_RS18775 -1.7 -1.4 nucleotidyltransferase family protein compare
ABZR86_RS20820 -1.7 -1.0 CsbD family protein compare
ABZR86_RS07660 -1.7 -3.4 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS07665 -1.7 -2.3 exodeoxyribonuclease V subunit beta compare
ABZR86_RS02505 -1.6 -2.1 hypothetical protein compare
ABZR86_RS13780 -1.6 -4.1 hypothetical protein compare
ABZR86_RS12280 -1.6 -1.5 dihydrolipoyl dehydrogenase compare
ABZR86_RS22185 -1.6 -2.4 NUDIX hydrolase compare
ABZR86_RS00645 -1.6 -3.1 FecR domain-containing protein compare
ABZR86_RS16760 -1.5 -1.2 phage tail terminator-like protein compare
ABZR86_RS18430 -1.5 -1.7 type II toxin-antitoxin system HigA family antitoxin compare
ABZR86_RS02750 -1.5 -6.0 cytochrome c compare
ABZR86_RS08945 -1.5 -5.2 C40 family peptidase compare
ABZR86_RS17150 -1.5 -7.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS02895 -1.5 -3.0 ABC transporter ATP-binding protein compare
ABZR86_RS21280 -1.5 -2.6 hypothetical protein compare
ABZR86_RS04380 -1.5 -2.3 universal stress protein compare
ABZR86_RS12780 -1.5 -3.1 pteridine reductase compare
ABZR86_RS12925 -1.5 -6.9 cytochrome c oxidase subunit I compare
ABZR86_RS03265 -1.5 -2.0 acyl carrier protein compare
ABZR86_RS12910 -1.5 -6.3 SURF1 family protein compare
ABZR86_RS14705 -1.5 -2.8 GntR family transcriptional regulator compare
ABZR86_RS07105 -1.5 -2.6 hypoxanthine-guanine phosphoribosyltransferase compare
ABZR86_RS19630 -1.4 -1.8 hypothetical protein compare
ABZR86_RS02545 -1.4 -2.8 Ref family recombination enhancement nuclease compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Fructose in Dyella japonica UNC79MFTsu3.2

For carbon source D-Fructose across organisms