Experiment set1IT089 for Paraburkholderia graminis OAS925

Compare to:

L-Histidine carbon source

200 most detrimental genes:

  gene name fitness t score description  
ABIE53_002102 +5.9 40.2 hypothetical protein compare
ABIE53_003146 +5.3 28.4 ADP-L-glycero-D-manno-heptose 6-epimerase compare
ABIE53_002100 +5.2 35.5 two-component system osmolarity sensor histidine kinase EnvZ compare
ABIE53_000099 +5.1 41.4 hypothetical protein compare
ABIE53_000098 +5.0 47.3 flagellar hook protein FlgE compare
ABIE53_000094 +5.0 33.9 flagellar P-ring protein precursor FlgI compare
ABIE53_000101 +5.0 26.8 flagellar basal-body rod protein FlgC compare
ABIE53_000096 +4.9 34.4 flagellar basal-body rod protein FlgG compare
ABIE53_000108 +4.9 42.2 RNA polymerase sigma factor for flagellar operon FliA compare
ABIE53_000102 +4.9 28.4 flagellar basal-body rod protein FlgB compare
ABIE53_000095 +4.9 24.0 flagellar L-ring protein precursor FlgH compare
ABIE53_000306 +4.9 5.6 general secretion pathway protein M compare
ABIE53_000097 +4.7 15.8 flagellar basal-body rod protein FlgF compare
ABIE53_000103 +4.7 43.7 flagella basal body P-ring formation protein FlgA compare
ABIE53_000086 +4.7 36.4 flagellar biosynthetic protein FliR compare
ABIE53_003434 +4.7 29.7 heptosyltransferase-2 compare
ABIE53_003160 +4.6 35.4 hypothetical protein compare
ABIE53_000078 +4.6 22.6 flagellar FliJ protein compare
ABIE53_000113 +4.6 37.9 flagellar biosynthesis protein FlhA compare
ABIE53_000084 +4.5 31.4 flagellar biosynthetic protein FliP compare
ABIE53_000085 +4.5 31.5 flagellar biosynthetic protein FliQ compare
ABIE53_002702 +4.5 16.2 hypothetical protein compare
ABIE53_000074 +4.4 39.8 flagellar M-ring protein FliF compare
ABIE53_000082 +4.4 23.5 flagellar motor switch protein FliN/FliY compare
ABIE53_000077 +4.3 36.6 flagellum-specific ATP synthase compare
ABIE53_000081 +4.3 30.5 flagellar motor switch protein FliM compare
ABIE53_000076 +4.2 28.7 flagellar assembly protein FliH compare
ABIE53_000147 +4.2 21.6 sugar O-acyltransferase (sialic acid O-acetyltransferase NeuD family) compare
ABIE53_000112 +4.2 19.3 hypothetical protein compare
ABIE53_000079 +4.2 31.7 flagellar hook-length control protein FliK compare
ABIE53_000114 +4.1 25.4 flagellar biosynthetic protein FlhB compare
ABIE53_000083 +4.1 18.0 flagellar protein FliO/FliZ compare
ABIE53_000075 +4.1 26.6 flagellar motor switch protein FliG compare
ABIE53_000093 +4.0 30.1 flagellar protein FlgJ compare
ABIE53_000100 +4.0 6.6 flagellar basal-body rod modification protein FlgD compare
ABIE53_002436 +3.8 12.6 tight adherence protein C compare
ABIE53_000111 +3.7 15.5 flagellar biosynthesis GTPase FlhF compare
ABIE53_003525 +3.7 33.0 LPS-assembly lipoprotein compare
ABIE53_003433 +3.5 7.7 putative Zn-finger protein compare
ABIE53_000128 +3.4 23.2 chemotaxis protein MotA compare
ABIE53_001149 +3.3 14.5 acetyltransferase-like isoleucine patch superfamily enzyme compare
ABIE53_001150 +3.3 17.5 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_000153 +3.3 27.5 O-antigen ligase compare
ABIE53_003015 +3.2 29.8 ATP-binding cassette subfamily B protein compare
ABIE53_002435 +3.2 8.3 Flp pilus assembly protein TadD compare
ABIE53_001148 +3.2 23.6 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_002856 +3.1 3.1 transcription elongation GreA/GreB family factor compare
ABIE53_001143 +3.1 23.5 GT2 family glycosyltransferase compare
ABIE53_000109 +3.0 4.0 MinD-like ATPase involved in chromosome partitioning or flagellar assembly compare
ABIE53_003014 +3.0 25.6 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_000142 +3.0 13.5 flagellar hook-associated protein 2 compare
ABIE53_001141 +2.9 21.8 GT2 family glycosyltransferase compare
ABIE53_001142 +2.9 14.2 hypothetical protein compare
ABIE53_002261 +2.9 2.7 simple sugar transport system ATP-binding protein compare
ABIE53_001061 +2.9 3.5 FixJ family two-component response regulator compare
ABIE53_002546 +2.9 3.3 cell wall-associated NlpC family hydrolase compare
ABIE53_001160 +2.8 17.0 GT2 family glycosyltransferase compare
ABIE53_001163 +2.8 16.5 FlaA1/EpsC-like NDP-sugar epimerase compare
ABIE53_000127 +2.8 17.6 chemotaxis protein MotB compare
ABIE53_000502 +2.8 6.2 hypothetical protein compare
ABIE53_003986 +2.7 2.8 uronate dehydrogenase compare
ABIE53_001701 +2.7 1.7 two-component system chemotaxis response regulator CheV compare
ABIE53_003231 +2.7 4.2 DNA-directed RNA polymerase subunit omega compare
ABIE53_002432 +2.7 12.0 putative membrane protein compare
ABIE53_001161 +2.6 10.8 nucleoside-diphosphate-sugar epimerase compare
ABIE53_003823 +2.6 2.7 tRNA-Leu compare
ABIE53_003432 +2.5 12.0 branched-chain amino acid aminotransferase compare
ABIE53_006039 +2.5 3.8 type III secretion control protein HpaP compare
ABIE53_006517 +2.5 4.1 cytochrome d ubiquinol oxidase subunit II compare
ABIE53_002073 +2.5 2.9 cystathionine beta-lyase/cystathionine gamma-synthase compare
ABIE53_006091 +2.5 3.1 hypothetical protein compare
ABIE53_001371 +2.4 1.9 DNA mismatch endonuclease (patch repair protein) compare
ABIE53_001771 +2.4 3.5 arginine N-succinyltransferase compare
ABIE53_006398 +2.4 2.8 FMN-dependent oxidoreductase (nitrilotriacetate monooxygenase family) compare
ABIE53_000378 +2.4 1.8 uncharacterized protein (TIGR00369 family) compare
ABIE53_002388 +2.4 1.6 5-hydroxyisourate hydrolase compare
ABIE53_000091 +2.3 17.6 flagellar hook-associated protein 1 FlgK compare
ABIE53_004200 +2.3 2.3 CBS domain-containing membrane protein compare
ABIE53_000141 +2.3 18.1 flagellin compare
ABIE53_004890 +2.3 2.3 hypothetical protein compare
ABIE53_005957 +2.3 2.0 hypothetical protein compare
ABIE53_004820 +2.3 11.9 K+-sensing histidine kinase KdpD compare
ABIE53_001010 +2.2 2.1 hypothetical protein compare
ABIE53_000087 +2.2 8.8 flagellin-like hook-associated protein FlgL compare
ABIE53_000988 +2.1 2.4 hypothetical protein compare
ABIE53_003281 +2.1 2.2 ribosomal protein S18 acetylase RimI-like enzyme compare
ABIE53_005866 +2.1 1.7 AraC-like DNA-binding protein compare
ABIE53_000119 +2.1 10.5 two-component system chemotaxis response regulator CheB compare
ABIE53_001704 +2.1 1.5 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_004248 +2.0 1.5 alpha-beta hydrolase superfamily lysophospholipase compare
ABIE53_004744 +2.0 15.6 methyl-accepting chemotaxis protein compare
ABIE53_000072 +2.0 13.4 flagellar protein FliS compare
ABIE53_004260 +2.0 2.1 hypothetical protein compare
ABIE53_000660 +2.0 13.5 phosphotransferase system enzyme I (PtsI) compare
ABIE53_004784 +2.0 3.0 6,7-dimethyl-8-ribityllumazine synthase compare
ABIE53_005495 +2.0 2.0 hypothetical protein compare
ABIE53_004149 +2.0 3.8 opacity protein-like surface antigen compare
ABIE53_004064 +1.9 2.7 DNA-binding LacI/PurR family transcriptional regulator compare
ABIE53_000703 +1.9 2.9 ferredoxin compare
ABIE53_006068 +1.9 2.5 branched-subunit amino acid ABC-type transport system permease component compare
ABIE53_001841 +1.9 1.8 putative spermidine/putrescine transport system ATP-binding protein compare
ABIE53_001469 +1.9 1.5 RimJ/RimL family protein N-acetyltransferase compare
ABIE53_002562 +1.9 2.7 putative permease compare
ABIE53_006389 +1.8 2.2 phosphoketolase compare
ABIE53_003952 +1.8 2.9 polar amino acid transport system substrate-binding protein compare
ABIE53_004181 +1.8 1.8 sarcosine oxidase subunit beta compare
ABIE53_005388 +1.8 2.4 hypothetical protein compare
ABIE53_004542 +1.8 2.2 DNA-binding transcriptional LysR family regulator compare
ABIE53_002580 +1.8 1.9 transcriptional regulator GlxA family with amidase domain compare
ABIE53_000299 +1.7 5.8 general secretion pathway protein C compare
ABIE53_005256 +1.7 3.3 D-inositol-3-phosphate glycosyltransferase compare
ABIE53_003887 +1.7 2.0 ribose transport system substrate-binding protein compare
ABIE53_003304 +1.7 4.0 dUTP pyrophosphatase compare
ABIE53_002560 +1.7 2.1 glutathione S-transferase compare
ABIE53_001140 +1.7 2.9 dTDP-4-dehydrorhamnose reductase compare
ABIE53_005795 +1.7 2.2 hypothetical protein compare
ABIE53_003125 +1.7 2.4 large subunit ribosomal protein L19 compare
ABIE53_005090 +1.7 2.7 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_001145 +1.7 9.3 lipopolysaccharide transport system permease protein compare
ABIE53_005200 +1.7 2.1 uncharacterized protein (DUF2252 family) compare
ABIE53_000659 +1.6 2.3 phosphocarrier protein HPr compare
ABIE53_001304 +1.6 3.3 chaperone protein EcpD compare
ABIE53_002352 +1.6 9.4 AcrR family transcriptional regulator compare
ABIE53_001365 +1.6 9.5 DNA-binding NtrC family response regulator compare
ABIE53_000718 +1.6 11.2 RNA polymerase sigma-54 factor compare
ABIE53_004024 +1.6 2.2 hypothetical protein compare
ABIE53_001692 +1.6 2.3 amino acid adenylation domain-containing protein compare
ABIE53_001187 +1.6 3.7 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_005909 +1.6 1.7 DNA-binding Lrp family transcriptional regulator compare
ABIE53_001486 +1.6 2.9 phosphotriesterase-related protein compare
ABIE53_000162 +1.6 2.7 hypothetical protein compare
ABIE53_002826 +1.6 3.7 putative metal-dependent hydrolase compare
ABIE53_001332 +1.6 3.4 sarcosine/dimethylglycine N-methyltransferase compare
ABIE53_004178 +1.6 1.9 putative spermidine/putrescine transport system permease protein compare
ABIE53_002438 +1.5 4.9 pilus assembly protein CpaF compare
ABIE53_005881 +1.5 2.1 hypothetical protein compare
ABIE53_005681 +1.5 2.4 hypothetical protein compare
ABIE53_006123 +1.5 1.4 hypothetical protein compare
ABIE53_005743 +1.5 1.4 NitT/TauT family transport system ATP-binding protein compare
ABIE53_000452 +1.5 1.9 endonuclease/exonuclease/phosphatase family metal-dependent hydrolase compare
ABIE53_000397 +1.5 2.9 7-carboxy-7-deazaguanine synthase compare
ABIE53_005192 +1.5 2.0 hypothetical protein compare
ABIE53_003728 +1.5 1.4 signal transduction histidine kinase compare
ABIE53_005529 +1.5 3.7 putative transcriptional regulator YheO compare
ABIE53_001465 +1.5 1.9 uncharacterized protein YaiI (UPF0178 family) compare
ABIE53_004932 +1.5 3.0 D-xylose transport system permease protein compare
ABIE53_005166 +1.5 1.5 DNA-binding GntR family transcriptional regulator compare
ABIE53_003029 +1.5 1.4 uncharacterized protein YjbJ (UPF0337 family) compare
ABIE53_000798 +1.5 5.1 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_001494 +1.5 2.2 osmoprotectant transport system ATP-binding protein compare
ABIE53_005038 +1.5 1.5 glycine/D-amino acid oxidase-like deaminating enzyme compare
ABIE53_005432 +1.4 2.8 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_001325 +1.4 2.8 HlyD family secretion protein compare
ABIE53_000307 +1.4 7.3 general secretion pathway protein N compare
ABIE53_000304 +1.4 9.0 general secretion pathway protein K compare
ABIE53_000570 +1.4 2.1 acyl dehydratase compare
ABIE53_000448 +1.4 9.0 two-component system invasion response regulator UvrY compare
ABIE53_004203 +1.4 1.9 uncharacterized protein (DUF488 family) compare
ABIE53_003468 +1.4 3.8 glycerol-3-phosphate dehydrogenase compare
ABIE53_002211 +1.4 2.2 lactaldehyde dehydrogenase/glycolaldehyde dehydrogenase compare
ABIE53_000161 +1.4 2.0 nitrogen regulatory protein P-II 1 compare
ABIE53_004027 +1.4 2.3 4-oxalomesaconate tautomerase compare
ABIE53_006323 +1.4 1.8 AraC family transcriptional activator of pobA compare
ABIE53_000464 +1.4 5.5 DNA-binding protein H-NS compare
ABIE53_004876 +1.4 1.9 hypothetical protein compare
ABIE53_001888 +1.4 2.9 N-methylhydantoinase A compare
ABIE53_001162 +1.4 7.8 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
ABIE53_003994 +1.4 1.5 DNA-binding protein HU-beta compare
ABIE53_004670 +1.3 2.4 transcriptional regulator with XRE-family HTH domain compare
ABIE53_002443 +1.3 1.0 prepilin peptidase CpaA compare
ABIE53_005283 +1.3 1.4 hypothetical protein compare
ABIE53_004628 +1.3 2.0 hypothetical protein compare
ABIE53_001520 +1.3 2.8 acetylornithine deacetylase compare
ABIE53_003737 +1.3 9.9 outer membrane protein compare
ABIE53_002151 +1.3 3.7 3-hydroxyacyl-CoA dehydrogenase compare
ABIE53_003196 +1.3 1.8 uncharacterized protein YbjQ (UPF0145 family) compare
ABIE53_002484 +1.3 2.5 membrane protein implicated in regulation of membrane protease activity compare
ABIE53_004272 +1.3 2.8 AcrR family transcriptional regulator compare
ABIE53_001007 +1.3 1.6 hypothetical protein compare
ABIE53_000450 +1.3 4.5 hypothetical protein compare
ABIE53_006429 +1.3 2.7 hypothetical protein compare
ABIE53_005040 +1.3 1.9 AraC-like DNA-binding protein compare
ABIE53_001607 +1.3 1.6 putative DNA-binding transcriptional regulator AlpA compare
ABIE53_004168 +1.3 2.3 transcriptional regulator with XRE-family HTH domain compare
ABIE53_006047 +1.3 1.3 type III secretion protein N (ATPase) compare
ABIE53_004863 +1.3 1.9 small subunit ribosomal protein S21 compare
ABIE53_001078 +1.3 2.0 hypothetical protein compare
ABIE53_006279 +1.3 1.9 hypothetical protein compare
ABIE53_000305 +1.3 9.8 general secretion pathway protein L compare
ABIE53_003030 +1.3 7.0 two-component system response regulator HydG compare
ABIE53_002940 +1.3 6.7 UTP--glucose-1-phosphate uridylyltransferase compare
ABIE53_002338 +1.3 1.5 sugar/nucleoside kinase (ribokinase family) compare
ABIE53_000130 +1.3 6.7 flagellar transcriptional activator FlhD compare
ABIE53_005721 +1.3 1.7 hypothetical protein compare
ABIE53_004487 +1.3 2.7 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_002056 +1.3 9.2 lipoprotein NlpD compare
ABIE53_004545 +1.3 1.8 DNA-binding transcriptional LysR family regulator compare
ABIE53_000486 +1.3 3.3 transcriptional regulator with XRE-family HTH domain compare
ABIE53_000298 +1.2 9.4 general secretion pathway protein F compare
ABIE53_006115 +1.2 3.0 acetyltransferase-like isoleucine patch superfamily enzyme compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Histidine in Paraburkholderia graminis OAS925

For carbon source L-Histidine across organisms