Experiment set1IT088 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; ShewMM media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS12510 -6.4 -16.1 FAD-dependent oxidoreductase compare
EX31_RS15020 -6.2 -16.2 ketol-acid reductoisomerase compare
EX31_RS03695 -6.1 -5.9 3-isopropylmalate dehydratase small subunit compare
EX31_RS12400 -6.0 -4.1 RNA polymerase factor sigma-54 compare
EX31_RS15005 -5.9 -16.7 dihydroxy-acid dehydratase compare
EX31_RS04035 -5.9 -9.9 phosphoserine phosphatase compare
EX31_RS14190 -5.9 -13.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03690 -5.8 -5.7 3-isopropylmalate dehydratase large subunit compare
EX31_RS14500 -5.7 -11.6 orotate phosphoribosyltransferase compare
EX31_RS20980 -5.7 -6.7 glutamate 5-kinase compare
EX31_RS12515 -5.6 -26.5 glutamate synthase large subunit compare
EX31_RS22625 -5.6 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS14180 -5.6 -15.0 argininosuccinate lyase compare
EX31_RS13445 -5.6 -14.4 argininosuccinate synthase compare
EX31_RS03830 -5.6 -15.3 carbamoyl-phosphate synthase large subunit compare
EX31_RS13160 -5.5 -12.4 amino-acid N-acetyltransferase compare
EX31_RS20975 -5.5 -5.3 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS03685 -5.4 -14.1 3-isopropylmalate dehydrogenase compare
EX31_RS03935 -5.4 -10.4 threonine synthase compare
EX31_RS02690 -5.3 -5.2 pyrroline-5-carboxylate reductase compare
EX31_RS03945 -5.3 -24.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS16855 -5.3 -17.0 phosphoribosylamine--glycine ligase compare
EX31_RS02520 -5.3 -3.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS21470 -5.3 -7.2 phosphoglycerate dehydrogenase compare
EX31_RS22750 -5.3 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS15880 -5.2 -9.4 nitrogen regulation protein NR(I) compare
EX31_RS03940 -5.2 -12.6 homoserine kinase compare
EX31_RS14200 -5.2 -19.6 phosphoenolpyruvate carboxylase compare
EX31_RS12785 -5.2 -14.9 aspartate carbamoyltransferase compare
EX31_RS13275 -5.2 -14.1 diaminopimelate decarboxylase compare
EX31_RS16860 -5.1 -21.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS23245 -5.1 -17.0 asparagine synthase B compare
EX31_RS11735 -5.1 -9.7 homoserine O-succinyltransferase compare
EX31_RS19570 -5.0 -12.6 amidophosphoribosyltransferase compare
EX31_RS23415 -5.0 -6.8 citrate synthase compare
EX31_RS22695 -5.0 -9.5 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11460 -4.9 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS02515 -4.9 -3.4 PAS domain-containing protein compare
EX31_RS11470 -4.9 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS14215 -4.9 -22.9 cystathionine gamma-synthase compare
EX31_RS12825 -4.9 -8.7 ornithine carbamoyltransferase compare
EX31_RS14185 -4.8 -10.8 acetylglutamate kinase compare
EX31_RS09970 -4.8 -5.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS11465 -4.8 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS20495 -4.8 -11.5 outer membrane protein assembly factor BamB compare
EX31_RS21895 -4.7 -19.6 phosphoribosylformylglycinamidine synthase compare
EX31_RS02530 -4.7 -5.6 ABC transporter ATP-binding protein compare
EX31_RS18530 -4.6 -15.4 leucine-responsive transcriptional regulator Lrp compare
EX31_RS03250 -4.6 -11.1 RNA polymerase-binding protein DksA compare
EX31_RS09975 -4.6 -6.3 tryptophan synthase subunit beta compare
EX31_RS22620 -4.5 -5.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS09955 -4.4 -6.0 anthranilate synthase component 1 compare
EX31_RS03835 -4.4 -10.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS07895 -4.3 -12.5 phosphoadenylyl-sulfate reductase compare
EX31_RS11440 -4.3 -7.2 histidinol dehydrogenase compare
EX31_RS11445 -4.3 -7.2 histidinol-phosphate transaminase compare
EX31_RS20450 -4.3 -6.5 IMP dehydrogenase compare
EX31_RS18540 -4.3 -2.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS11450 -4.3 -5.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07585 -4.3 -11.3 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS05785 -4.2 -5.7 superoxide dismutase [Mn] compare
EX31_RS09855 -4.2 -4.9 orotidine-5'-phosphate decarboxylase compare
EX31_RS18095 -4.1 -5.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09980 -4.1 -6.8 tryptophan synthase subunit alpha compare
EX31_RS07870 -4.1 -11.6 adenylyl-sulfate kinase compare
EX31_RS09965 -4.1 -7.7 anthranilate phosphoribosyltransferase compare
EX31_RS20175 -4.0 -10.8 cysteine synthase A compare
EX31_RS24385 -4.0 -3.9 dihydroorotase compare
EX31_RS22245 -3.9 -3.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS15870 -3.8 -2.6 glutamate--ammonia ligase compare
EX31_RS09890 -3.8 -12.8 HTH-type transcriptional regulator CysB compare
EX31_RS20735 -3.7 -5.1 exodeoxyribonuclease V subunit beta compare
EX31_RS14310 -3.7 -5.7 6-phosphofructokinase compare
EX31_RS18255 -3.7 -2.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS09960 -3.6 -5.5 glutamine amidotransferase compare
EX31_RS14205 -3.5 -11.0 methylenetetrahydrofolate reductase compare
EX31_RS14730 -3.5 -1.7 DUF2756 domain-containing protein compare
EX31_RS07590 -3.5 -2.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS23440 -3.3 -3.2 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14340 -3.3 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS04630 -3.3 -16.7 aspartate aminotransferase family protein compare
EX31_RS14335 -3.2 -2.2 serine O-acetyltransferase compare
EX31_RS11455 -3.2 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS22250 -3.2 -7.0 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS14620 -3.1 -3.0 SCP2 domain-containing protein compare
EX31_RS07905 -3.0 -19.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07900 -3.0 -16.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS06055 -2.9 -4.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03680 -2.8 -10.6 2-isopropylmalate synthase compare
EX31_RS07875 -2.8 -17.1 sulfate adenylyltransferase subunit CysN compare
EX31_RS21850 -2.7 -3.2 pyridoxine 5'-phosphate synthase compare
EX31_RS07955 -2.6 -16.0 GTP diphosphokinase compare
EX31_RS07880 -2.6 -15.8 sulfate adenylyltransferase subunit CysD compare
EX31_RS08720 -2.5 -12.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS10115 -2.5 -10.8 formyltetrahydrofolate deformylase compare
EX31_RS03775 -2.4 -5.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS18525 -2.4 -4.7 DNA translocase FtsK compare
EX31_RS08745 -2.4 -2.5 50S ribosomal protein L9 compare
EX31_RS15875 -2.4 -11.0 nitrogen regulation protein NR(II) compare
EX31_RS11435 -2.4 -6.9 ATP phosphoribosyltransferase compare
EX31_RS03710 -2.3 -2.3 glucose uptake inhibitor SgrT compare
EX31_RS23490 -2.3 -3.7 cell envelope integrity protein TolA compare
EX31_RS06060 -2.3 -6.2 phosphate ABC transporter permease PstA compare
EX31_RS06070 -2.3 -9.9 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS03480 -2.3 -3.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS15010 -2.2 -9.2 threonine ammonia-lyase, biosynthetic compare
EX31_RS19655 -2.2 -6.3 beta-ketoacyl-ACP synthase I compare
EX31_RS12875 -2.2 -3.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS07595 -2.2 -8.2 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS09550 -2.2 -2.9 flagellar assembly protein FliH compare
EX31_RS23480 -2.0 -3.7 Tol-Pal system protein TolQ compare
EX31_RS03030 -2.0 -9.9 helix-turn-helix transcriptional regulator compare
EX31_RS01970 -2.0 -1.8 hypothetical protein compare
EX31_RS15540 -1.9 -2.3 SDR family oxidoreductase compare
EX31_RS19610 -1.9 -8.3 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS25365 -1.9 -1.9 50S ribosomal protein L31 compare
EX31_RS06150 -1.8 -12.5 transcriptional regulator AsnC compare
EX31_RS23495 -1.8 -6.9 Tol-Pal system protein TolB compare
EX31_RS23455 -1.8 -4.0 succinate--CoA ligase subunit alpha compare
EX31_RS03035 -1.7 -6.9 LysE family transporter compare
EX31_RS09670 -1.7 -2.3 bleomycin resistance protein compare
EX31_RS09895 -1.7 -3.2 type I DNA topoisomerase compare
EX31_RS08535 -1.7 -2.5 30S ribosome-binding factor RbfA compare
EX31_RS19485 -1.7 -6.6 phosphate acetyltransferase compare
EX31_RS23500 -1.7 -3.9 peptidoglycan-associated lipoprotein Pal compare
EX31_RS11815 -1.7 -8.0 glucose-6-phosphate isomerase compare
EX31_RS22715 -1.6 -2.4 arsenate reductase (glutaredoxin) compare
EX31_RS09130 -1.6 -4.6 ANTAR domain-containing protein compare
EX31_RS22430 -1.5 -2.1 hemolysin expression modulator Hha compare
EX31_RS19600 -1.5 -7.0 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS07560 -1.5 -12.3 ATP-dependent chaperone ClpB compare
EX31_RS22740 -1.5 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS25370 -1.5 -9.2 HTH-type transcriptional regulator MetR compare
EX31_RS06065 -1.5 -6.7 phosphate ABC transporter permease PstC compare
EX31_RS13045 -1.5 -10.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS16845 -1.5 -4.3 DNA-binding protein HU-alpha compare
EX31_RS12500 -1.5 -7.8 stringent starvation protein A compare
EX31_RS04725 -1.5 -3.8 shikimate kinase AroK compare
EX31_RS04105 -1.4 -2.5 helix-turn-helix domain-containing protein compare
EX31_RS15155 -1.4 -2.8 diaminopimelate epimerase compare
EX31_RS09995 -1.4 -2.6 YkgJ family cysteine cluster protein compare
EX31_RS19205 -1.4 -2.6 50S ribosomal protein L25 compare
EX31_RS14325 -1.4 -8.9 envelope stress sensor histidine kinase CpxA compare
EX31_RS08130 -1.4 -1.8 accessory factor UbiK family protein compare
EX31_RS03400 -1.4 -5.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS09080 -1.4 -1.5 LysR family transcriptional regulator compare
EX31_RS15015 -1.4 -3.5 HTH-type transcriptional activator IlvY compare
EX31_RS19480 -1.4 -6.4 acetate kinase compare
EX31_RS23315 -1.4 -5.4 replication initiation negative regulator SeqA compare
EX31_RS21020 -1.4 -2.0 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS23420 -1.4 -3.4 succinate dehydrogenase cytochrome b556 subunit compare
EX31_RS10535 -1.4 -1.5 GtrA family protein compare
EX31_RS21400 -1.4 -4.9 transketolase compare
EX31_RS11075 -1.3 -2.8 putative motility protein compare
EX31_RS19435 -1.3 -2.1 NADH-quinone oxidoreductase subunit A compare
EX31_RS09520 -1.3 -2.4 hypothetical protein compare
EX31_RS23485 -1.3 -2.2 colicin uptake protein TolR compare
EX31_RS07785 -1.3 -1.7 carbon storage regulator CsrA compare
EX31_RS13480 -1.3 -4.0 site-specific tyrosine recombinase XerD compare
EX31_RS05145 -1.3 -6.6 inorganic phosphate transporter PitA compare
EX31_RS18785 -1.3 -3.1 DUF2384 domain-containing protein compare
EX31_RS05270 -1.2 -4.1 carbonic anhydrase compare
EX31_RS01530 -1.2 -1.4 hypothetical protein compare
EX31_RS06000 -1.2 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS09535 -1.2 -2.5 flagellar hook-basal body complex protein FliE compare
EX31_RS08150 -1.2 -8.4 inorganic triphosphatase compare
EX31_RS26085 -1.2 -2.0 alpha/beta hydrolase compare
EX31_RS25110 -1.2 -1.9 DUF2474 domain-containing protein compare
EX31_RS01840 -1.2 -2.5 PAS domain-containing protein compare
EX31_RS25340 -1.2 -4.2 hypothetical protein compare
EX31_RS25375 -1.2 -2.6 ilv operon leader peptide compare
EX31_RS10075 -1.2 -7.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
EX31_RS09340 -1.1 -2.8 HigA family addiction module antidote protein compare
EX31_RS06550 -1.1 -2.4 two-component system response regulator NarL compare
EX31_RS11540 -1.1 -3.7 dCTP deaminase compare
EX31_RS01760 -1.1 -5.3 hypothetical protein compare
EX31_RS01065 -1.1 -3.4 glycine zipper family protein compare
EX31_RS20180 -1.1 -2.1 phosphocarrier protein Hpr compare
EX31_RS11675 -1.1 -2.0 Holliday junction branch migration protein RuvA compare
EX31_RS06140 -1.1 -7.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS06680 -1.1 -1.3 cellulose biosynthesis protein BcsF compare
EX31_RS11690 -1.1 -1.6 dihydroneopterin triphosphate diphosphatase compare
EX31_RS02525 -1.1 -4.7 ABC transporter permease compare
EX31_RS15000 -1.1 -6.3 branched-chain amino acid transaminase compare
EX31_RS15530 -1.1 -1.3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS04390 -1.1 -2.4 DNA polymerase III subunit chi compare
EX31_RS03040 -1.0 -5.0 hypothetical protein compare
EX31_RS24395 -1.0 -3.3 ribonuclease E compare
EX31_RS19380 -1.0 -3.7 NADH-quinone oxidoreductase subunit M compare
EX31_RS24625 -1.0 -1.7 DUF2766 domain-containing protein compare
EX31_RS10930 -1.0 -1.2 protein DsrB compare
EX31_RS09495 -1.0 -2.5 DUF4186 domain-containing protein compare
EX31_RS18270 -1.0 -7.2 formate C-acetyltransferase compare
EX31_RS01075 -1.0 -3.8 manganese-binding transcriptional regulator MntR compare
EX31_RS09940 -1.0 -4.5 23S rRNA pseudouridine(2605) synthase RluB compare
EX31_RS01990 -1.0 -1.5 type VI secretion system baseplate subunit TssE compare
EX31_RS14990 -1.0 -6.3 acetolactate synthase 2 catalytic subunit compare
EX31_RS20185 -1.0 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS07380 -1.0 -1.7 redox-regulated ATPase YchF compare
EX31_RS23785 -1.0 -2.1 DUF262 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms