Experiment set1IT087 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with sodium fluoride 6.25 mM

200 most important genes:

  gene name fitness t score description  
AO353_27635 -4.2 -4.9 camphor resistance protein CrcB compare
AO353_00495 -4.1 -2.8 DNA topoisomerase I compare
AO353_14590 -2.7 -2.1 serine kinase/phosphatase compare
AO353_02710 -2.6 -12.2 (p)ppGpp synthetase compare
AO353_02280 -2.5 -2.9 DNA mismatch repair protein MutS compare
AO353_00825 -2.4 -3.9 porin compare
AO353_13200 -2.2 -11.0 exoribonuclease R compare
AO353_06355 -2.2 -4.3 thiamine-phosphate pyrophosphorylase compare
AO353_14220 -2.1 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_03710 -2.1 -3.9 formyltetrahydrofolate deformylase compare
AO353_03615 -2.1 -3.9 cold-shock protein compare
AO353_16805 -2.1 -6.6 recombinase RecA compare
AO353_12650 -2.1 -1.7 hypothetical protein compare
AO353_18540 -2.0 -3.6 pseudouridine synthase compare
AO353_09890 -2.0 -5.6 phosphate ABC transporter ATP-binding protein compare
AO353_09915 -1.9 -6.4 long-chain acyl-CoA thioester hydrolase compare
AO353_19090 -1.9 -2.4 MarR family transcriptional regulator compare
AO353_03520 -1.8 -3.3 hypothetical protein compare
AO353_06045 -1.8 -7.2 exodeoxyribonuclease V subunit beta compare
AO353_12420 -1.7 -3.8 predicted FeS cluster maintenance protein (from data) compare
AO353_13140 -1.7 -5.8 tRNA dimethylallyltransferase compare
AO353_11255 -1.7 -3.5 RND transporter compare
AO353_06040 -1.7 -3.7 exodeoxyribonuclease V subunit alpha compare
AO353_19250 -1.7 -2.2 molybdenum cofactor guanylyltransferase compare
AO353_07645 -1.6 -1.6 sarcosine oxidase subunit gamma compare
AO353_02640 -1.6 -1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_07355 -1.6 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_19145 -1.6 -4.0 protease HtpX compare
AO353_06600 -1.6 -6.6 transcriptional regulator conserved
AO353_04355 -1.6 -2.1 homoserine dehydrogenase compare
AO353_04090 -1.5 -2.5 leucyl-tRNA synthetase compare
AO353_06590 -1.5 -3.2 zinc-dependent peptidase compare
AO353_27665 -1.5 -7.0 arginyl-tRNA-protein transferase compare
AO353_24130 -1.5 -3.1 hypothetical protein compare
AO353_00650 -1.5 -2.6 cytochrome biogenesis protein compare
AO353_02000 -1.5 -3.6 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_03580 -1.4 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_27000 -1.4 -2.3 hypothetical protein compare
AO353_09900 -1.4 -7.8 phosphate ABC transporter permease compare
AO353_04175 -1.4 -4.2 glycerol uptake facilitator GlpF compare
AO353_06050 -1.4 -5.5 exodeoxyribonuclease V subunit gamma compare
AO353_26830 -1.3 -4.0 histidine kinase compare
AO353_03715 -1.3 -2.4 H-NS histone compare
AO353_09905 -1.3 -6.4 phosphate-binding protein compare
AO353_08765 -1.3 -3.9 hypothetical protein compare
AO353_01595 -1.3 -2.0 Flp pilus assembly protein CpaB compare
AO353_27720 -1.3 -3.5 cupin compare
AO353_09250 -1.3 -2.8 exodeoxyribonuclease III compare
AO353_13640 -1.3 -3.7 histidine kinase compare
AO353_06415 -1.3 -3.8 hypothetical protein compare
AO353_15450 -1.3 -7.8 ubiquinol oxidase subunit II compare
AO353_04565 -1.3 -4.6 nucleoid-associated protein compare
AO353_15470 -1.2 -8.0 protoheme IX farnesyltransferase compare
AO353_22305 -1.2 -2.0 LysR family transcriptional regulator compare
AO353_13420 -1.2 -2.0 hypothetical protein compare
AO353_21400 -1.2 -2.1 conjugal transfer protein TraR compare
AO353_15465 -1.2 -4.5 cytochrome C oxidase compare
AO353_00620 -1.2 -2.2 cytochrome C oxidase Cbb3 compare
AO353_13580 -1.2 -2.6 copper resistance protein CopZ compare
AO353_15250 -1.2 -2.8 cytochrome B compare
AO353_25320 -1.2 -2.0 phosphoribosyl-dephospho-CoA transferase compare
AO353_15490 -1.2 -2.3 hypothetical protein compare
AO353_10445 -1.2 -1.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_18780 -1.2 -4.6 cobyrinic acid a,c-diamide synthase compare
AO353_12930 -1.1 -2.9 GlcNAc-PI de-N-acetylase compare
AO353_26310 -1.1 -2.7 hypothetical protein compare
AO353_18840 -1.1 -3.1 flagellar biosynthesis protein FlhB compare
AO353_13570 -1.1 -7.6 TonB-dependent receptor compare
AO353_00975 -1.1 -3.0 hypothetical protein compare
AO353_13720 -1.1 -7.4 arginine decarboxylase compare
AO353_10320 -1.1 -1.8 hypothetical protein compare
AO353_15830 -1.1 -1.2 transcriptional regulator compare
AO353_28055 -1.1 -2.4 hypothetical protein compare
AO353_06850 -1.1 -3.1 MFS transporter compare
AO353_07555 -1.1 -2.4 glycine cleavage system protein R compare
AO353_15460 -1.1 -4.1 cytochrome o ubiquinol oxidase subunit III compare
AO353_05280 -1.1 -2.2 4-carboxymuconolactone decarboxylase compare
AO353_21640 -1.0 -1.4 cobalt transporter compare
AO353_15455 -1.0 -7.2 cytochrome o ubiquinol oxidase subunit I compare
AO353_04520 -1.0 -3.0 elongation factor 4 compare
AO353_00750 -1.0 -2.4 GntR family transcriptional regulator compare
AO353_03135 -1.0 -2.1 hypothetical protein compare
AO353_02005 -1.0 -1.5 hypothetical protein compare
AO353_09000 -1.0 -3.8 argininosuccinate lyase compare
AO353_03595 -1.0 -2.5 hypothetical protein compare
AO353_10985 -1.0 -2.3 hypothetical protein compare
AO353_14945 -1.0 -1.9 hypothetical protein compare
AO353_26755 -1.0 -2.8 hypothetical protein compare
AO353_10440 -1.0 -3.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_14775 -1.0 -4.1 hypothetical protein compare
AO353_11915 -1.0 -3.9 agmatine deiminase compare
AO353_03230 -1.0 -2.9 lysine transporter LysE compare
AO353_06585 -1.0 -4.4 hypothetical protein compare
AO353_02975 -0.9 -2.4 aspartate kinase compare
AO353_08060 -0.9 -2.1 hypothetical protein compare
AO353_01975 -0.9 -4.4 glycosyl transferase compare
AO353_14085 -0.9 -2.0 hypothetical protein compare
AO353_22580 -0.9 -2.0 3-demethylubiquinone-9 3-methyltransferase compare
AO353_03100 -0.9 -1.6 XRE family transcriptional regulator compare
AO353_16875 -0.9 -4.1 ribosomal protein S12 methylthiotransferase RimO compare
AO353_18765 -0.9 -1.9 hypothetical protein compare
AO353_17750 -0.9 -1.5 transcriptional regulator compare
AO353_12345 -0.9 -1.7 twin-arginine protein translocation system subunit TatC compare
AO353_01410 -0.9 -2.3 ribonuclease E compare
AO353_09895 -0.9 -4.0 phosphate ABC transporter permease compare
AO353_14740 -0.9 -2.6 GTP-binding protein compare
AO353_11610 -0.9 -2.1 glutamine ABC transporter ATP-binding protein compare
AO353_00660 -0.9 -2.0 transcriptional regulator compare
AO353_24745 -0.9 -1.2 hypothetical protein compare
AO353_11165 -0.9 -5.0 hypothetical protein compare
AO353_12710 -0.9 -1.3 thioredoxin compare
AO353_05125 -0.9 -3.3 BolA family transcriptional regulator compare
AO353_02885 -0.9 -1.5 flagellar biosynthesis protein FlgN compare
AO353_27500 -0.9 -1.5 hypothetical protein compare
AO353_00195 -0.9 -1.5 virion morphogenesis protein compare
AO353_06580 -0.9 -5.0 GNAT family acetyltransferase compare
AO353_09860 -0.9 -5.6 histidine kinase compare
AO353_08760 -0.9 -6.2 Xaa-Pro aminopeptidase compare
AO353_26240 -0.9 -2.1 hypothetical protein compare
AO353_01915 -0.9 -1.1 GlcG protein compare
AO353_09150 -0.9 -1.6 cytochrome C2 compare
AO353_16675 -0.9 -2.7 phage tail protein compare
AO353_00635 -0.9 -2.0 hypothetical protein compare
AO353_05010 -0.9 -1.4 HopJ type III effector protein compare
AO353_09240 -0.9 -2.2 acetylglutamate kinase compare
AO353_05240 -0.9 -1.9 rod shape-determining protein MreD compare
AO353_03670 -0.9 -3.0 ornithine acetyltransferase compare
AO353_05140 -0.9 -4.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_12105 -0.9 -3.7 peptidase S41 compare
AO353_18130 -0.9 -1.9 hypothetical protein compare
AO353_06575 -0.8 -4.3 ethanolamine ammonia-lyase compare
AO353_09030 -0.8 -1.1 iron donor protein CyaY compare
AO353_11945 -0.8 -1.1 4-oxalocrotonate tautomerase compare
AO353_15385 -0.8 -1.8 hypothetical protein compare
AO353_12395 -0.8 -1.5 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_01405 -0.8 -3.5 23S rRNA pseudouridylate synthase compare
AO353_22810 -0.8 -0.9 hypothetical protein compare
AO353_09135 -0.8 -0.9 cytochrome C compare
AO353_10805 -0.8 -2.2 hypothetical protein compare
AO353_11455 -0.8 -1.5 hypothetical protein compare
AO353_26945 -0.8 -1.6 transcriptional regulator compare
AO353_08465 -0.8 -6.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_27675 -0.8 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_27460 -0.8 -1.3 hypothetical protein compare
AO353_09050 -0.8 -1.8 recombinase XerC compare
AO353_15170 -0.8 -1.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_22195 -0.8 -1.2 metal ABC transporter permease compare
AO353_20335 -0.8 -3.4 3-methylcrotonyl-CoA carboxylase compare
AO353_15185 -0.8 -2.7 ATPase compare
AO353_23590 -0.8 -1.7 ArsR family transcriptional regulator compare
AO353_26820 -0.8 -3.0 histidine kinase compare
AO353_23245 -0.8 -1.3 DNA-3-methyladenine glycosylase compare
AO353_08640 -0.8 -1.4 hypothetical protein compare
AO353_29005 -0.8 -1.7 hypothetical protein compare
AO353_05135 -0.8 -4.3 toluene tolerance protein compare
AO353_00460 -0.8 -1.8 TetR family transcriptional regulator compare
AO353_14500 -0.8 -3.3 acetolactate synthase 3 regulatory subunit compare
AO353_13985 -0.8 -2.1 pilus assembly protein compare
AO353_00330 -0.8 -4.6 hypothetical protein compare
AO353_00490 -0.8 -1.6 PasA protein compare
AO353_28890 -0.8 -2.3 hypothetical protein compare
AO353_15410 -0.8 -1.3 hypothetical protein compare
AO353_23425 -0.8 -2.3 3-demethylubiquinone-9 3-methyltransferase compare
AO353_20175 -0.8 -2.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_24415 -0.8 -1.1 glutamine ABC transporter ATP-binding protein compare
AO353_15290 -0.7 -3.4 methyltransferase compare
AO353_16740 -0.7 -1.9 phage tail protein compare
AO353_08115 -0.7 -3.2 energy transducer TonB compare
AO353_24190 -0.7 -2.2 hypothetical protein compare
AO353_09320 -0.7 -4.0 ATP-dependent DNA helicase RecG compare
AO353_12575 -0.7 -2.1 type II secretion system protein GspJ compare
AO353_28905 -0.7 -3.3 transposase compare
AO353_11695 -0.7 -1.2 hypothetical protein compare
AO353_15445 -0.7 -1.7 disulfide bond formation protein B compare
AO353_29355 -0.7 -1.8 hypothetical protein compare
AO353_08645 -0.7 -1.8 transporter compare
AO353_03590 -0.7 -1.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_03815 -0.7 -1.1 heme utilization protein compare
AO353_17930 -0.7 -2.6 restriction endonuclease compare
AO353_12245 -0.7 -1.9 hypothetical protein compare
AO353_13515 -0.7 -2.2 Urease (EC 3.5.1.5) (from data) compare
AO353_08885 -0.7 -5.1 polyphosphate kinase compare
AO353_08975 -0.7 -2.8 heme biosynthesis protein HemY compare
AO353_12385 -0.7 -2.7 polyhydroxyalkanoic acid system protein compare
AO353_20425 -0.7 -1.4 ArsC family transcriptional regulator compare
AO353_11720 -0.7 -2.0 taurine transporter ATP-binding subunit compare
AO353_07610 -0.7 -0.7 hypothetical protein compare
AO353_29160 -0.7 -1.7 GTP pyrophosphokinase compare
AO353_24340 -0.7 -0.8 TetR family transcriptional regulator compare
AO353_02250 -0.7 -1.4 chorismate synthase compare
AO353_05800 -0.7 -2.0 hypothetical protein compare
AO353_05465 -0.7 -4.8 flavodoxin compare
AO353_11655 -0.7 -2.7 SfnB family sulfur acquisition oxidoreductase compare
AO353_15905 -0.7 -2.7 outer membrane protein assembly factor BamB compare
AO353_10945 -0.7 -1.5 cytochrome C compare
AO353_26935 -0.7 -1.5 LysR family transcriptional regulator compare
AO353_15885 -0.7 -2.3 Cro/Cl family transcriptional regulator compare
AO353_17005 -0.7 -1.7 hypothetical protein compare
AO353_02020 -0.7 -2.3 hypothetical protein compare
AO353_08980 -0.7 -1.4 heme biosynthesis operon protein HemX compare


Specific Phenotypes

For 1 genes in this experiment

For stress sodium fluoride in Pseudomonas fluorescens FW300-N2E3

For stress sodium fluoride across organisms