Experiment set1IT087 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; ShewMM media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS14190 -6.9 -8.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS12510 -6.3 -15.9 FAD-dependent oxidoreductase compare
EX31_RS12400 -5.9 -4.1 RNA polymerase factor sigma-54 compare
EX31_RS15005 -5.9 -16.2 dihydroxy-acid dehydratase compare
EX31_RS20980 -5.9 -5.7 glutamate 5-kinase compare
EX31_RS03250 -5.8 -8.9 RNA polymerase-binding protein DksA compare
EX31_RS03695 -5.7 -6.0 3-isopropylmalate dehydratase small subunit compare
EX31_RS22625 -5.6 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS12515 -5.6 -26.4 glutamate synthase large subunit compare
EX31_RS04035 -5.6 -12.6 phosphoserine phosphatase compare
EX31_RS14215 -5.6 -20.4 cystathionine gamma-synthase compare
EX31_RS13275 -5.6 -12.5 diaminopimelate decarboxylase compare
EX31_RS03685 -5.6 -13.0 3-isopropylmalate dehydrogenase compare
EX31_RS14185 -5.5 -8.4 acetylglutamate kinase compare
EX31_RS03945 -5.4 -23.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS15020 -5.4 -19.6 ketol-acid reductoisomerase compare
EX31_RS03940 -5.4 -12.0 homoserine kinase compare
EX31_RS13445 -5.4 -16.2 argininosuccinate synthase compare
EX31_RS22750 -5.3 -3.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS14180 -5.3 -17.0 argininosuccinate lyase compare
EX31_RS23245 -5.2 -15.5 asparagine synthase B compare
EX31_RS03690 -5.2 -12.2 3-isopropylmalate dehydratase large subunit compare
EX31_RS11735 -5.2 -8.7 homoserine O-succinyltransferase compare
EX31_RS16855 -5.2 -16.6 phosphoribosylamine--glycine ligase compare
EX31_RS12785 -5.1 -14.7 aspartate carbamoyltransferase compare
EX31_RS02690 -5.1 -6.0 pyrroline-5-carboxylate reductase compare
EX31_RS03830 -5.1 -18.9 carbamoyl-phosphate synthase large subunit compare
EX31_RS16860 -5.1 -21.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS02530 -5.0 -6.0 ABC transporter ATP-binding protein compare
EX31_RS19570 -5.0 -13.0 amidophosphoribosyltransferase compare
EX31_RS21895 -5.0 -18.0 phosphoribosylformylglycinamidine synthase compare
EX31_RS03935 -5.0 -12.6 threonine synthase compare
EX31_RS11460 -5.0 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS11470 -5.0 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS02515 -5.0 -3.4 PAS domain-containing protein compare
EX31_RS13160 -4.9 -14.8 amino-acid N-acetyltransferase compare
EX31_RS09980 -4.9 -4.8 tryptophan synthase subunit alpha compare
EX31_RS21470 -4.9 -10.5 phosphoglycerate dehydrogenase compare
EX31_RS18530 -4.9 -14.6 leucine-responsive transcriptional regulator Lrp compare
EX31_RS02520 -4.8 -4.7 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS20495 -4.8 -11.2 outer membrane protein assembly factor BamB compare
EX31_RS12825 -4.8 -8.6 ornithine carbamoyltransferase compare
EX31_RS20975 -4.7 -8.5 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS22695 -4.7 -9.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS14200 -4.7 -19.0 phosphoenolpyruvate carboxylase compare
EX31_RS11465 -4.7 -6.4 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS03835 -4.7 -10.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS22620 -4.6 -5.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS11440 -4.6 -6.3 histidinol dehydrogenase compare
EX31_RS14500 -4.6 -12.9 orotate phosphoribosyltransferase compare
EX31_RS23415 -4.6 -8.8 citrate synthase compare
EX31_RS09975 -4.6 -7.6 tryptophan synthase subunit beta compare
EX31_RS07585 -4.5 -10.4 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS11450 -4.3 -5.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS18095 -4.3 -5.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09960 -4.3 -5.1 glutamine amidotransferase compare
EX31_RS11455 -4.2 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS15880 -4.2 -11.9 nitrogen regulation protein NR(I) compare
EX31_RS09970 -4.2 -8.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS24385 -4.0 -3.9 dihydroorotase compare
EX31_RS09955 -4.0 -8.2 anthranilate synthase component 1 compare
EX31_RS11445 -4.0 -8.0 histidinol-phosphate transaminase compare
EX31_RS07870 -3.9 -10.4 adenylyl-sulfate kinase compare
EX31_RS20175 -3.9 -11.3 cysteine synthase A compare
EX31_RS14205 -3.9 -14.2 methylenetetrahydrofolate reductase compare
EX31_RS18540 -3.9 -3.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09965 -3.9 -8.3 anthranilate phosphoribosyltransferase compare
EX31_RS20450 -3.9 -8.2 IMP dehydrogenase compare
EX31_RS07895 -3.9 -12.6 phosphoadenylyl-sulfate reductase compare
EX31_RS18255 -3.7 -2.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS09855 -3.7 -5.6 orotidine-5'-phosphate decarboxylase compare
EX31_RS15870 -3.7 -2.6 glutamate--ammonia ligase compare
EX31_RS23440 -3.7 -2.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS22245 -3.7 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS09890 -3.6 -13.8 HTH-type transcriptional regulator CysB compare
EX31_RS20190 -3.5 -2.4 PTS glucose transporter subunit IIA compare
EX31_RS04630 -3.5 -15.8 aspartate aminotransferase family protein compare
EX31_RS22250 -3.5 -6.6 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS07905 -3.5 -19.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS18525 -3.5 -4.1 DNA translocase FtsK compare
EX31_RS07900 -3.4 -15.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS07380 -3.3 -3.2 redox-regulated ATPase YchF compare
EX31_RS22430 -3.3 -3.0 hemolysin expression modulator Hha compare
EX31_RS14340 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS04105 -3.2 -3.0 helix-turn-helix domain-containing protein compare
EX31_RS14310 -3.1 -5.6 6-phosphofructokinase compare
EX31_RS14335 -3.1 -2.2 serine O-acetyltransferase compare
EX31_RS05785 -3.1 -5.2 superoxide dismutase [Mn] compare
EX31_RS11815 -3.1 -12.5 glucose-6-phosphate isomerase compare
EX31_RS23490 -3.1 -4.1 cell envelope integrity protein TolA compare
EX31_RS07590 -2.9 -3.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS03680 -2.9 -10.6 2-isopropylmalate synthase compare
EX31_RS10115 -2.9 -11.6 formyltetrahydrofolate deformylase compare
EX31_RS04925 -2.7 -4.5 Fe-S biogenesis protein NfuA compare
EX31_RS07955 -2.6 -15.4 GTP diphosphokinase compare
EX31_RS06055 -2.5 -4.8 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS15875 -2.5 -10.8 nitrogen regulation protein NR(II) compare
EX31_RS07875 -2.5 -15.3 sulfate adenylyltransferase subunit CysN compare
EX31_RS03790 -2.5 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS23500 -2.5 -5.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS04725 -2.5 -5.6 shikimate kinase AroK compare
EX31_RS07595 -2.4 -9.1 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS07880 -2.4 -14.3 sulfate adenylyltransferase subunit CysD compare
EX31_RS08720 -2.4 -12.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS20735 -2.3 -5.9 exodeoxyribonuclease V subunit beta compare
EX31_RS03035 -2.3 -9.3 LysE family transporter compare
EX31_RS23485 -2.2 -3.0 colicin uptake protein TolR compare
EX31_RS09895 -2.2 -3.6 type I DNA topoisomerase compare
EX31_RS21020 -2.2 -2.5 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS03400 -2.1 -6.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS03480 -2.1 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS15010 -2.0 -8.3 threonine ammonia-lyase, biosynthetic compare
EX31_RS06060 -2.0 -4.9 phosphate ABC transporter permease PstA compare
EX31_RS19655 -1.9 -6.2 beta-ketoacyl-ACP synthase I compare
EX31_RS02740 -1.9 -1.6 oxidative damage protection protein compare
EX31_RS13480 -1.9 -5.4 site-specific tyrosine recombinase XerD compare
EX31_RS11435 -1.9 -6.5 ATP phosphoribosyltransferase compare
EX31_RS05145 -1.8 -8.0 inorganic phosphate transporter PitA compare
EX31_RS10180 -1.8 -1.7 type II 3-dehydroquinate dehydratase compare
EX31_RS19480 -1.8 -7.4 acetate kinase compare
EX31_RS03030 -1.8 -8.5 helix-turn-helix transcriptional regulator compare
EX31_RS10580 -1.8 -4.0 septum site-determining protein MinC compare
EX31_RS25365 -1.8 -1.5 50S ribosomal protein L31 compare
EX31_RS23480 -1.7 -4.7 Tol-Pal system protein TolQ compare
EX31_RS23495 -1.7 -7.3 Tol-Pal system protein TolB compare
EX31_RS02385 -1.7 -1.6 hypothetical protein compare
EX31_RS11525 -1.7 -2.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS26025 -1.7 -1.6 conjugal transfer protein TraK compare
EX31_RS19610 -1.7 -6.8 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS25105 -1.7 -1.8 DUF2474 domain-containing protein compare
EX31_RS06150 -1.6 -11.3 transcriptional regulator AsnC compare
EX31_RS06065 -1.6 -5.9 phosphate ABC transporter permease PstC compare
EX31_RS21850 -1.6 -2.5 pyridoxine 5'-phosphate synthase compare
EX31_RS23125 -1.6 -3.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS07560 -1.6 -12.0 ATP-dependent chaperone ClpB compare
EX31_RS09775 -1.5 -2.0 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS21400 -1.5 -5.6 transketolase compare
EX31_RS25300 -1.5 -1.4 YqaE/Pmp3 family membrane protein compare
EX31_RS06070 -1.5 -6.7 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS22740 -1.5 -8.3 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS04390 -1.5 -2.9 DNA polymerase III subunit chi compare
EX31_RS11240 -1.5 -2.2 GNAT family N-acetyltransferase compare
EX31_RS12875 -1.5 -2.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS03775 -1.5 -4.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS08745 -1.5 -2.1 50S ribosomal protein L9 compare
EX31_RS02080 -1.5 -3.3 FadR family transcriptional regulator compare
EX31_RS25140 -1.4 -2.3 AlpA family transcriptional regulator compare
EX31_RS21190 -1.4 -3.5 ribonuclease HI compare
EX31_RS13045 -1.4 -8.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS21300 -1.4 -2.3 acyl carrier protein compare
EX31_RS14620 -1.4 -2.0 SCP2 domain-containing protein compare
EX31_RS03085 -1.4 -6.3 hypothetical protein compare
EX31_RS04325 -1.4 -1.1 hypothetical protein compare
EX31_RS06000 -1.4 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS21805 -1.4 -2.2 anti-sigma-E factor RseA compare
EX31_RS08150 -1.4 -8.9 inorganic triphosphatase compare
EX31_RS02325 -1.3 -1.6 GNAT family N-acetyltransferase compare
EX31_RS14325 -1.3 -7.1 envelope stress sensor histidine kinase CpxA compare
EX31_RS20210 -1.3 -6.0 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS25375 -1.3 -2.9 ilv operon leader peptide compare
EX31_RS06225 -1.3 -1.9 hypothetical protein compare
EX31_RS03330 -1.3 -2.3 hypoxanthine phosphoribosyltransferase compare
EX31_RS02525 -1.3 -5.5 ABC transporter permease compare
EX31_RS10030 -1.3 -1.7 YciY family protein compare
EX31_RS15015 -1.3 -3.2 HTH-type transcriptional activator IlvY compare
EX31_RS04710 -1.3 -3.1 adenine-specific DNA-methyltransferase compare
EX31_RS18785 -1.3 -3.8 DUF2384 domain-containing protein compare
EX31_RS19375 -1.2 -3.6 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS19485 -1.2 -5.0 phosphate acetyltransferase compare
EX31_RS09700 -1.2 -2.8 GlpM family protein compare
EX31_RS14220 -1.2 -2.7 met regulon transcriptional regulator MetJ compare
EX31_RS19600 -1.2 -4.8 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS01595 -1.2 -1.0 phage minor tail protein G compare
EX31_RS19205 -1.2 -3.0 50S ribosomal protein L25 compare
EX31_RS18370 -1.2 -1.3 tail protein X compare
EX31_RS25370 -1.2 -7.7 HTH-type transcriptional regulator MetR compare
EX31_RS09425 -1.2 -1.9 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS11625 -1.1 -1.0 hypothetical protein compare
EX31_RS15000 -1.1 -6.6 branched-chain amino acid transaminase compare
EX31_RS06140 -1.1 -7.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS18270 -1.1 -7.6 formate C-acetyltransferase compare
EX31_RS16555 -1.1 -1.2 PTS sugar transporter subunit IIB compare
EX31_RS11350 -1.1 -3.2 protein phosphatase CheZ compare
EX31_RS09490 -1.1 -1.1 hypothetical protein compare
EX31_RS24220 -1.1 -1.7 hypothetical protein compare
EX31_RS10375 -1.1 -2.0 hypothetical protein compare
EX31_RS09220 -1.1 -1.3 MurR/RpiR family transcriptional regulator compare
EX31_RS04975 -1.1 -4.0 HTH-type transcriptional regulator UlaR compare
EX31_RS20185 -1.1 -4.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS15910 -1.0 -5.5 thiol:disulfide interchange protein DsbA compare
EX31_RS09250 -1.0 -2.9 ABC transporter permease subunit compare
EX31_RS16625 -1.0 -0.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS07610 -1.0 -2.5 conjugal transfer protein TraR compare
EX31_RS13280 -1.0 -6.2 LysR family transcriptional regulator compare
EX31_RS06915 -1.0 -1.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS01260 -1.0 -1.4 YebG family protein compare
EX31_RS09995 -1.0 -1.3 YkgJ family cysteine cluster protein compare
EX31_RS09550 -1.0 -1.3 flagellar assembly protein FliH compare
EX31_RS07185 -1.0 -3.6 mannosyl-3-phosphoglycerate phosphatase-related protein compare
EX31_RS23160 -1.0 -2.4 amino acid ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms