Experiment set1IT087 for Pantoea sp. MT58

Compare to:

Cobalt chloride hexahydrate 10 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_21450 +1.9 3.5 general stress protein compare
IAI47_14470 +1.1 2.3 YbaB/EbfC family nucleoid-associated protein compare
IAI47_18145 +1.0 2.2 elongation factor Tu compare
IAI47_07020 +1.0 1.3 hypothetical protein compare
IAI47_06385 +0.9 3.8 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_11550 +0.8 3.3 hypothetical protein compare
IAI47_10320 +0.8 1.4 Rrf2 family transcriptional regulator compare
IAI47_06380 +0.8 2.4 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_08285 +0.8 5.4 flagellar transcriptional regulator FlhC compare
IAI47_20250 +0.7 2.1 DeoR family transcriptional regulator compare
IAI47_08015 +0.7 5.3 flagellum-specific ATP synthase FliI compare
IAI47_06565 +0.7 1.1 YejL family protein compare
IAI47_08280 +0.7 5.1 flagellar transcriptional regulator FlhD compare
IAI47_05580 +0.7 1.8 membrane protein YpdK compare
IAI47_15235 +0.7 2.5 hydroxyisourate hydrolase compare
IAI47_05630 +0.7 2.0 hypothetical protein compare
IAI47_08160 +0.7 4.5 RNA polymerase sigma factor FliA compare
IAI47_09550 +0.7 2.8 hypothetical protein compare
IAI47_14965 +0.6 1.3 hypothetical protein compare
IAI47_12165 +0.6 4.3 flagellar basal body rod protein FlgB compare
IAI47_19350 +0.6 3.2 DUF305 domain-containing protein compare
IAI47_13750 +0.6 2.9 succinate dehydrogenase iron-sulfur subunit compare
IAI47_05035 +0.6 2.0 nucleoside-diphosphate kinase compare
IAI47_06415 +0.6 2.5 NADH-quinone oxidoreductase subunit M compare
IAI47_11200 +0.6 2.2 DotU family type IV/VI secretion system protein compare
IAI47_06470 +0.6 4.6 two-component system sensor histidine kinase RcsC compare
IAI47_12170 +0.6 3.9 flagellar basal body P-ring formation protein FlgA compare
IAI47_07475 +0.6 0.9 hypothetical protein compare
IAI47_06390 +0.6 1.6 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_07930 +0.6 1.6 DUF2158 domain-containing protein compare
IAI47_08605 +0.6 2.3 hypothetical protein compare
IAI47_06420 +0.6 2.2 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_12145 +0.6 3.4 flagellar basal body rod protein FlgF compare
IAI47_02400 +0.6 0.7 YhdT family protein compare
IAI47_07975 +0.6 3.5 flagellar biosynthesis protein FliQ compare
IAI47_08005 +0.6 3.5 flagellar hook-length control protein FliK compare
IAI47_12135 +0.5 4.3 flagellar basal body L-ring protein FlgH compare
IAI47_01135 +0.5 0.6 hypothetical protein compare
IAI47_08030 +0.5 4.3 flagellar M-ring protein FliF compare
IAI47_07985 +0.5 3.3 flagellar biosynthetic protein FliO compare
IAI47_08035 +0.5 1.0 flagellar hook-basal body complex protein FliE compare
IAI47_21235 +0.5 1.6 hypothetical protein compare
IAI47_13950 +0.5 0.7 PhoH family protein compare
IAI47_16420 +0.5 4.2 LacI family DNA-binding transcriptional regulator compare
IAI47_10225 +0.5 1.5 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_08345 +0.5 4.1 flagellar type III secretion system protein FlhB compare
IAI47_14700 +0.5 3.0 protoheme IX farnesyltransferase compare
IAI47_08740 +0.5 1.9 DUF2627 domain-containing protein compare
IAI47_14365 +0.5 2.0 ABC transporter ATP-binding protein compare
IAI47_07995 +0.5 3.8 flagellar motor switch protein FliM compare
IAI47_12155 +0.5 3.7 flagellar hook assembly protein FlgD compare
IAI47_00670 +0.5 4.5 sugar glycosyltransferase compare
IAI47_06030 +0.5 1.7 hypothetical protein compare
IAI47_04855 +0.5 2.0 anti-sigma-E factor RseA compare
IAI47_08010 +0.5 2.7 flagella biosynthesis chaperone FliJ compare
IAI47_14695 +0.5 2.2 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_02385 +0.5 3.4 tRNA dihydrouridine synthase DusB compare
IAI47_12125 +0.5 3.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_20600 +0.5 0.9 hypothetical protein compare
IAI47_08730 +0.5 1.4 YebO family protein compare
IAI47_07280 +0.4 1.9 RluA family pseudouridine synthase compare
IAI47_12150 +0.4 3.7 flagellar hook protein FlgE compare
IAI47_21830 +0.4 0.7 hypothetical protein compare
IAI47_14685 +0.4 3.1 cytochrome o ubiquinol oxidase subunit I compare
IAI47_08800 +0.4 1.3 YoaH family protein compare
IAI47_18265 +0.4 0.8 Sec-independent protein translocase subunit TatB compare
IAI47_19355 +0.4 2.2 response regulator compare
IAI47_17080 +0.4 2.0 transcription elongation factor GreA compare
IAI47_12140 +0.4 2.7 flagellar basal-body rod protein FlgG compare
IAI47_16090 +0.4 2.5 Co2+/Mg2+ efflux protein ApaG compare
IAI47_01780 +0.4 1.0 Fe-S biogenesis protein NfuA compare
IAI47_18240 +0.4 1.2 NAD(P)H-flavin reductase compare
IAI47_00730 +0.4 1.7 glutaredoxin 3 compare
IAI47_10930 +0.4 2.3 C40 family peptidase compare
IAI47_14295 +0.4 1.8 hypothetical protein compare
IAI47_16595 +0.4 1.4 DUF4102 domain-containing protein compare
IAI47_07470 +0.4 1.7 AlpA family transcriptional regulator compare
IAI47_06455 +0.4 1.8 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_08350 +0.4 3.0 flagellar biosynthesis protein FlhA compare
IAI47_03645 +0.4 3.7 O-antigen ligase family protein compare
IAI47_12160 +0.4 2.8 flagellar basal body rod protein FlgC compare
IAI47_02895 +0.4 3.4 DedA family protein compare
IAI47_08025 +0.4 2.8 flagellar motor switch protein FliG compare
IAI47_20295 +0.4 2.2 DUF1427 family protein compare
IAI47_04070 +0.4 1.7 flavodoxin compare
IAI47_07980 +0.4 2.4 flagellar type III secretion system pore protein FliP compare
IAI47_13065 +0.4 1.0 DUF1418 family protein compare
IAI47_08020 +0.4 2.3 flagellar assembly protein FliH compare
IAI47_16405 +0.4 1.1 siderophore-iron reductase FhuF compare
IAI47_02830 +0.4 1.7 divisome-associated lipoprotein YraP compare
IAI47_11360 +0.4 1.3 hypothetical protein compare
IAI47_08420 +0.4 1.5 DUF72 domain-containing protein compare
IAI47_07970 +0.4 2.8 flagellar type III secretion system protein FliR compare
IAI47_06365 +0.4 1.5 NADH-quinone oxidoreductase subunit B compare
IAI47_08295 +0.4 3.1 flagellar motor protein MotB compare
IAI47_10745 +0.4 2.0 superoxide dismutase family protein compare
IAI47_02380 +0.4 0.9 DNA-binding transcriptional regulator Fis compare
IAI47_14275 +0.4 1.9 GPW/gp25 family protein compare
IAI47_08470 +0.4 3.1 murein DD-endopeptidase MepM compare
IAI47_08145 +0.4 3.3 flagellin FliC compare
IAI47_14015 +0.4 2.3 ribosome silencing factor compare
IAI47_13075 +0.4 2.0 hypothetical protein compare
IAI47_20775 +0.4 2.5 hydroxyacid dehydrogenase compare
IAI47_18715 +0.4 0.6 YibL family ribosome-associated protein compare
IAI47_12130 +0.4 3.0 flagellar basal body P-ring protein FlgI compare
IAI47_03145 +0.4 2.3 DUF1249 family protein compare
IAI47_17385 +0.4 1.3 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_19685 +0.4 1.4 hypothetical protein compare
IAI47_19050 +0.4 0.9 hypothetical protein compare
IAI47_03640 +0.4 3.3 glycosyltransferase compare
IAI47_10285 +0.4 2.4 SrfC compare
IAI47_10230 +0.4 2.0 dipeptidase compare
IAI47_16950 +0.4 1.8 GIY-YIG nuclease family protein compare
IAI47_10565 +0.4 0.8 DUF4113 domain-containing protein compare
IAI47_13850 +0.4 1.1 LexA regulated protein compare
IAI47_06480 +0.4 2.6 phosphotransferase RcsD compare
IAI47_00675 +0.4 3.3 glycosyltransferase family 9 protein compare
IAI47_07990 +0.4 1.8 flagellar motor switch protein FliN compare
IAI47_21770 +0.4 1.4 Txe/YoeB family addiction module toxin compare
IAI47_03765 +0.4 1.6 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_11605 +0.4 1.4 hypothetical protein compare
IAI47_21520 +0.3 1.6 YgdI/YgdR family lipoprotein compare
IAI47_07800 +0.3 1.9 phosphonate ABC transporter ATP-binding protein compare
IAI47_09825 +0.3 1.9 xanthine dehydrogenase accessory protein XdhC compare
IAI47_14920 +0.3 1.5 pyrimidine/purine nucleoside phosphorylase compare
IAI47_20455 +0.3 2.6 sugar porter family MFS transporter compare
IAI47_18905 +0.3 1.8 pyridoxamine 5'-phosphate oxidase family protein compare
IAI47_00930 +0.3 2.3 DNA-binding transcriptional regulator OxyR compare
IAI47_12955 +0.3 1.5 cold shock-like protein CspD compare
IAI47_18490 +0.3 1.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_08290 +0.3 2.3 flagellar motor stator protein MotA compare
IAI47_05835 +0.3 2.0 hypothetical protein compare
IAI47_14465 +0.3 1.7 recombination protein RecR compare
IAI47_10555 +0.3 1.0 hypothetical protein compare
IAI47_09845 +0.3 1.3 hypothetical protein compare
IAI47_21345 +0.3 1.4 DUF1471 domain-containing protein compare
IAI47_08680 +0.3 2.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_06100 +0.3 1.8 cytochrome c-type biogenesis protein CcmH compare
IAI47_01625 +0.3 1.4 GNAT family N-acetyltransferase compare
IAI47_08000 +0.3 2.3 flagellar basal body-associated protein FliL compare
IAI47_20290 +0.3 1.4 XapX domain-containing protein compare
IAI47_19125 +0.3 1.3 hypothetical protein compare
IAI47_13155 +0.3 0.9 H-NS histone family protein compare
IAI47_21720 +0.3 1.4 efflux RND transporter periplasmic adaptor subunit compare
IAI47_18980 +0.3 1.6 helix-turn-helix domain-containing protein compare
IAI47_20335 +0.3 2.1 sugar phosphate isomerase/epimerase compare
IAI47_12430 +0.3 1.8 hypothetical protein compare
IAI47_05670 +0.3 1.4 AlpA family transcriptional regulator compare
IAI47_21580 +0.3 2.0 sulfonate ABC transporter substrate-binding protein compare
IAI47_20440 +0.3 1.6 SDR family oxidoreductase compare
IAI47_00845 +0.3 1.8 HslU--HslV peptidase ATPase subunit compare
IAI47_04925 +0.3 2.6 membrane-bound lytic murein transglycosylase MltF compare
IAI47_06370 +0.3 1.2 NADH-quinone oxidoreductase subunit C/D compare
IAI47_09675 +0.3 1.1 YoaK family small membrane protein compare
IAI47_01610 +0.3 1.5 glycerophosphodiester phosphodiesterase compare
IAI47_11545 +0.3 1.3 hypothetical protein compare
IAI47_00835 +0.3 1.0 cell division protein ZapB compare
IAI47_05735 +0.3 1.2 hypothetical protein compare
IAI47_01935 +0.3 1.8 peptidylprolyl isomerase A compare
IAI47_20980 +0.3 1.6 hypothetical protein compare
IAI47_20045 +0.3 1.5 amino acid ABC transporter ATP-binding protein compare
IAI47_06450 +0.3 1.3 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_20645 +0.3 1.3 YtfJ family protein compare
IAI47_01825 +0.3 2.0 two-component system sensor histidine kinase EnvZ compare
IAI47_03670 +0.3 1.2 DUF937 domain-containing protein compare
IAI47_09950 +0.3 1.6 hypothetical protein compare
IAI47_09695 +0.3 1.7 HTH-type transcriptional activator RhaS compare
IAI47_15150 +0.3 1.8 DUF3289 family protein compare
IAI47_03630 +0.3 1.5 SprT family zinc-dependent metalloprotease compare
IAI47_03290 +0.3 2.0 hypothetical protein compare
IAI47_19745 +0.3 1.8 GNAT family N-acetyltransferase compare
IAI47_19025 +0.3 1.8 LacI family DNA-binding transcriptional regulator compare
IAI47_01500 +0.3 1.6 DcrB family lipoprotein compare
IAI47_05690 +0.3 1.3 hypothetical protein compare
IAI47_10210 +0.3 1.4 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
IAI47_09635 +0.3 1.3 hypothetical protein compare
IAI47_03865 +0.3 1.2 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_20905 +0.3 1.1 PTS transporter subunit EIIB compare
IAI47_18925 +0.3 1.6 LysR family transcriptional regulator compare
IAI47_18215 +0.3 0.4 Trk system potassium transporter TrkH compare
IAI47_09405 +0.3 1.4 envelope stress response membrane protein PspC compare
IAI47_09980 +0.3 1.5 VOC family protein compare
IAI47_01330 +0.3 2.0 ribonuclease Z compare
IAI47_04055 +0.3 1.7 SecY-interacting protein compare
IAI47_21115 +0.3 0.9 arsenate reductase (glutaredoxin) compare
IAI47_19850 +0.3 1.1 hypothetical protein compare
IAI47_16135 +0.3 1.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_09995 +0.3 1.3 MurR/RpiR family transcriptional regulator compare
IAI47_20005 +0.3 0.8 PTS sugar transporter subunit IIA compare
IAI47_16430 +0.3 1.4 histidine phosphatase family protein compare
IAI47_08975 +0.3 1.2 NAD(P)H nitroreductase compare
IAI47_11625 +0.3 0.9 DUF1311 domain-containing protein compare
IAI47_02890 +0.3 1.4 EnvZ/OmpR regulon moderator MzrA compare
IAI47_01655 +0.3 1.4 gluconokinase compare
IAI47_05875 +0.3 2.0 lysozyme compare
IAI47_09595 +0.3 2.0 aromatic acid/H+ symport family MFS transporter compare
IAI47_13305 +0.3 1.8 helix-turn-helix transcriptional regulator compare
IAI47_10000 +0.3 1.7 ABC transporter permease compare
IAI47_20125 +0.3 1.3 hypothetical protein compare
IAI47_11670 +0.3 1.3 type VI secretion system protein TssA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Cobalt chloride hexahydrate across organisms