Experiment set1IT086 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with copper (II) chloride dihydrate 2.5 mM

200 most important genes:

  gene name fitness t score description  
AO353_06155 -4.7 -8.5 copper-transporting ATPase compare
AO353_22205 -4.3 -8.7 copper resistance protein CopB conserved
AO353_00355 -4.3 -2.9 transcriptional regulator compare
AO353_19370 -4.1 -13.3 transcriptional regulator conserved
AO353_05625 -4.0 -2.8 transcription elongation factor GreA compare
AO353_22210 -3.6 -18.1 copper oxidase conserved
AO353_09040 -3.4 -3.2 diaminopimelate epimerase compare
AO353_22800 -3.3 -4.9 sulfite reductase compare
AO353_20200 -3.0 -4.6 peptidylprolyl isomerase compare
AO353_08420 -3.0 -12.7 ATPase P conserved
AO353_09890 -2.9 -6.5 phosphate ABC transporter ATP-binding protein compare
AO353_12115 -2.9 -3.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_18540 -2.9 -4.3 pseudouridine synthase compare
AO353_14150 -2.8 -2.7 peptidylprolyl isomerase compare
AO353_06160 -2.8 -5.0 transcriptional regulator compare
AO353_03710 -2.8 -4.2 formyltetrahydrofolate deformylase compare
AO353_12950 -2.7 -9.9 polymerase compare
AO353_15900 -2.7 -3.1 GTP-binding protein compare
AO353_00825 -2.6 -4.2 porin compare
AO353_04535 -2.5 -8.4 aminopeptidase compare
AO353_01410 -2.4 -4.2 ribonuclease E compare
AO353_12350 -2.3 -3.6 preprotein translocase compare
AO353_19375 -2.3 -3.8 histidine kinase compare
AO353_05130 -2.3 -2.4 anti-anti-sigma factor compare
AO353_07315 -2.3 -3.1 rRNA methyltransferase compare
AO353_12420 -2.3 -3.8 predicted FeS cluster maintenance protein (from data) compare
AO353_14220 -2.2 -2.2 ribosomal large subunit pseudouridine synthase D compare
AO353_12090 -2.2 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_02250 -2.2 -4.1 chorismate synthase compare
AO353_09905 -2.2 -9.5 phosphate-binding protein compare
AO353_12500 -2.2 -2.5 shikimate kinase compare
AO353_28110 -2.2 -6.5 TetR family transcriptional regulator compare
AO353_07645 -2.1 -2.1 sarcosine oxidase subunit gamma compare
AO353_02440 -2.1 -11.7 peptidase S41 compare
AO353_07515 -2.1 -2.4 transporter compare
AO353_09440 -2.1 -2.7 type VI secretion protein compare
AO353_16425 -2.1 -1.8 Fe-S metabolism protein SufE compare
AO353_05240 -2.1 -2.0 rod shape-determining protein MreD compare
AO353_12075 -2.1 -8.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12070 -2.1 -8.2 imidazoleglycerol-phosphate dehydratase compare
AO353_06460 -2.1 -7.3 hypothetical protein compare
AO353_07140 -2.0 -14.0 peptidase M23 compare
AO353_07355 -2.0 -6.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_04035 -2.0 -5.0 exclusion suppressor FxsA compare
AO353_08170 -2.0 -4.9 hypothetical protein compare
AO353_15905 -2.0 -7.2 outer membrane protein assembly factor BamB compare
AO353_05110 -2.0 -9.7 histidinol dehydrogenase compare
AO353_17290 -2.0 -6.6 multidrug transporter compare
AO353_04825 -2.0 -7.0 hypothetical protein compare
AO353_17410 -2.0 -2.8 arylsulfate sulfotransferase compare
AO353_10710 -2.0 -5.7 tryptophan synthase subunit beta compare
AO353_00430 -2.0 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_11730 -2.0 -9.7 glutamate--cysteine ligase compare
AO353_12940 -2.0 -5.2 glycosyl transferase compare
AO353_15455 -1.9 -12.7 cytochrome o ubiquinol oxidase subunit I compare
AO353_05225 -1.9 -12.9 hypothetical protein compare
AO353_03580 -1.9 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_09050 -1.9 -3.8 recombinase XerC compare
AO353_09900 -1.9 -9.3 phosphate ABC transporter permease compare
AO353_10730 -1.8 -1.8 hypothetical protein compare
AO353_19530 -1.8 -2.4 quinohemoprotein amine dehydrogenase compare
AO353_12085 -1.8 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_03795 -1.8 -4.7 fumarate hydratase compare
AO353_01685 -1.8 -1.5 hypothetical protein compare
AO353_17970 -1.8 -12.4 hypothetical protein compare
AO353_04835 -1.8 -9.2 fusaric acid resistance protein compare
AO353_09235 -1.8 -7.8 phosphoglucomutase compare
AO353_05690 -1.8 -4.1 SsrA-binding protein compare
AO353_06040 -1.7 -3.9 exodeoxyribonuclease V subunit alpha compare
AO353_06045 -1.7 -7.5 exodeoxyribonuclease V subunit beta compare
AO353_03715 -1.7 -2.0 H-NS histone compare
AO353_19365 -1.7 -8.3 thiol:disulfide interchange protein compare
AO353_04830 -1.7 -4.4 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_06050 -1.7 -6.8 exodeoxyribonuclease V subunit gamma compare
AO353_18505 -1.7 -2.2 translation initiation factor 2 compare
AO353_20095 -1.6 -3.3 histidine kinase compare
AO353_12935 -1.6 -3.5 glycosyltransferase compare
AO353_09240 -1.6 -3.9 acetylglutamate kinase compare
AO353_11850 -1.6 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_05010 -1.6 -2.7 HopJ type III effector protein compare
AO353_20185 -1.5 -5.7 DNA-binding protein compare
AO353_06415 -1.5 -2.5 hypothetical protein compare
AO353_02015 -1.5 -6.1 acetyltransferase compare
AO353_14370 -1.5 -5.9 glucose-6-phosphate isomerase compare
AO353_10885 -1.5 -5.2 metal ABC transporter permease compare
AO353_04840 -1.5 -8.3 RND transporter compare
AO353_07210 -1.5 -4.8 indole-3-glycerol-phosphate synthase compare
AO353_17640 -1.5 -2.5 serine peptidase compare
AO353_02020 -1.5 -4.6 hypothetical protein compare
AO353_07075 -1.5 -4.2 elongation factor Tu compare
AO353_00515 -1.5 -3.4 hypothetical protein compare
AO353_16890 -1.5 -6.0 virulence factor family protein compare
AO353_16530 -1.5 -1.2 ribonuclease HII compare
AO353_02330 -1.4 -2.8 allantoicase compare
AO353_20800 -1.4 -1.6 hypothetical protein compare
AO353_10705 -1.4 -3.9 tryptophan synthase subunit alpha compare
AO353_17300 -1.4 -5.4 antibiotic transporter compare
AO353_20590 -1.4 -2.3 hydrolase compare
AO353_01995 -1.4 -9.7 hypothetical protein compare
AO353_04810 -1.4 -1.8 hypothetical protein compare
AO353_00620 -1.4 -2.6 cytochrome C oxidase Cbb3 compare
AO353_15460 -1.4 -6.2 cytochrome o ubiquinol oxidase subunit III compare
AO353_07685 -1.4 -3.7 hypothetical protein compare
AO353_02000 -1.4 -4.0 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_15465 -1.4 -5.0 cytochrome C oxidase compare
AO353_04175 -1.4 -4.6 glycerol uptake facilitator GlpF compare
AO353_04355 -1.4 -2.4 homoserine dehydrogenase compare
AO353_11750 -1.3 -2.5 ATPase compare
AO353_17295 -1.3 -10.0 multidrug transporter compare
AO353_11340 -1.3 -1.5 MarR family transcriptional regulator compare
AO353_27650 -1.3 -4.0 cell division protein FtsK compare
AO353_04365 -1.3 -3.8 recombinase XerD compare
AO353_06720 -1.3 -2.0 NrdR family transcriptional regulator compare
AO353_28425 -1.3 -2.9 TetR family transcriptional regulator compare
AO353_08265 -1.3 -4.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_21630 -1.3 -2.2 precorrin-4 C11-methyltransferase compare
AO353_20785 -1.3 -4.0 carbon storage regulator CsrA compare
AO353_09720 -1.3 -1.1 hypothetical protein compare
AO353_03615 -1.3 -3.2 cold-shock protein compare
AO353_12345 -1.3 -2.2 twin-arginine protein translocation system subunit TatC compare
AO353_00955 -1.3 -3.2 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_14420 -1.2 -3.6 molecular chaperone DnaK compare
AO353_18960 -1.2 -1.9 terminase compare
AO353_23405 -1.2 -2.1 hypothetical protein compare
AO353_20665 -1.2 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_16940 -1.2 -4.7 deoxycytidine triphosphate deaminase compare
AO353_26830 -1.2 -4.0 histidine kinase compare
AO353_10890 -1.2 -3.8 methionine ABC transporter ATP-binding protein compare
AO353_13640 -1.2 -3.7 histidine kinase compare
AO353_06850 -1.2 -3.7 MFS transporter compare
AO353_14740 -1.2 -3.3 GTP-binding protein compare
AO353_01970 -1.2 -6.9 hypothetical protein compare
AO353_08110 -1.2 -5.0 glutathione synthetase compare
AO353_12930 -1.2 -2.5 GlcNAc-PI de-N-acetylase compare
AO353_19755 -1.2 -2.3 cytosine deaminase compare
AO353_02010 -1.1 -3.9 glycosyl transferase family 1 compare
AO353_09860 -1.1 -6.2 histidine kinase compare
AO353_15725 -1.1 -3.7 hypothetical protein compare
AO353_18335 -1.1 -2.4 hypothetical protein compare
AO353_01485 -1.1 -3.7 ABC transporter compare
AO353_03585 -1.1 -2.5 ATP-dependent DNA helicase RuvA compare
AO353_15470 -1.1 -7.5 protoheme IX farnesyltransferase compare
AO353_10065 -1.1 -4.6 hypothetical protein compare
AO353_01985 -1.1 -6.2 hypothetical protein compare
AO353_09250 -1.1 -2.5 exodeoxyribonuclease III compare
AO353_12315 -1.1 -7.2 glucosyltransferase MdoH compare
AO353_29215 -1.1 -1.6 alpha/beta hydrolase compare
AO353_07325 -1.1 -1.6 diadenosine tetraphosphatase compare
AO353_20340 -1.1 -3.0 gamma-carboxygeranoyl-CoA hydratase compare
AO353_10510 -1.1 -1.7 benzoate transporter compare
AO353_16495 -1.1 -3.6 zinc metallopeptidase RseP compare
AO353_03545 -1.1 -5.4 hypothetical protein compare
AO353_13100 -1.1 -1.6 GTPase RsgA compare
AO353_03815 -1.1 -1.7 heme utilization protein compare
AO353_04190 -1.1 -1.8 glycerol-3-phosphate dehydrogenase compare
AO353_20840 -1.1 -1.3 ribose pyranase compare
AO353_09475 -1.0 -2.9 hypothetical protein compare
AO353_06585 -1.0 -5.1 hypothetical protein compare
AO353_07220 -1.0 -4.8 anthranilate synthase compare
AO353_26835 -1.0 -2.7 transcriptional regulator compare
AO353_02280 -1.0 -1.5 DNA mismatch repair protein MutS compare
AO353_03250 -1.0 -1.6 gluconokinase compare
AO353_20810 -1.0 -1.8 hypothetical protein compare
AO353_10375 -1.0 -2.8 XRE family transcriptional regulator compare
AO353_02940 -1.0 -1.7 DNA-binding protein compare
AO353_03015 -1.0 -2.6 arginine N-succinyltransferase compare
AO353_15170 -1.0 -2.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_10945 -1.0 -2.1 cytochrome C compare
AO353_12650 -1.0 -1.0 hypothetical protein compare
AO353_03840 -1.0 -2.1 ABC transporter ATP-binding protein compare
AO353_07155 -0.9 -4.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_23785 -0.9 -1.6 hypothetical protein compare
AO353_09060 -0.9 -1.2 hypothetical protein compare
AO353_14990 -0.9 -1.8 hypothetical protein compare
AO353_25825 -0.9 -4.5 sodium:proton antiporter compare
AO353_02690 -0.9 -5.3 dehydrogenase compare
AO353_02025 -0.9 -5.9 mannose-1-phosphate guanyltransferase compare
AO353_00885 -0.9 -2.7 3-methylitaconate isomerase compare
AO353_04565 -0.9 -3.8 nucleoid-associated protein compare
AO353_05280 -0.9 -1.5 4-carboxymuconolactone decarboxylase compare
AO353_10930 -0.9 -4.8 DNA polymerase I compare
AO353_16805 -0.9 -3.5 recombinase RecA compare
AO353_11695 -0.9 -2.3 hypothetical protein compare
AO353_02710 -0.9 -5.8 (p)ppGpp synthetase compare
AO353_06495 -0.9 -2.9 gamma-glutamyl phosphate reductase compare
AO353_05075 -0.9 -5.3 adenylylsulfate kinase compare
AO353_08350 -0.9 -3.6 hypothetical protein compare
AO353_17035 -0.9 -2.8 hypothetical protein compare
AO353_21305 -0.9 -2.9 glycolate oxidase compare
AO353_12540 -0.9 -2.1 hypothetical protein compare
AO353_14860 -0.9 -1.6 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_27365 -0.9 -2.5 hypothetical protein compare
AO353_01355 -0.9 -4.6 3-oxoacyl-ACP synthase compare
AO353_01975 -0.9 -4.8 glycosyl transferase compare
AO353_16440 -0.9 -2.1 ArsC family transcriptional regulator compare
AO353_03805 -0.9 -2.4 C4-dicarboxylate ABC transporter compare
AO353_11945 -0.9 -0.9 4-oxalocrotonate tautomerase compare
AO353_23425 -0.9 -2.5 3-demethylubiquinone-9 3-methyltransferase compare
AO353_01405 -0.9 -3.6 23S rRNA pseudouridylate synthase compare
AO353_16810 -0.8 -2.1 recombinase RecX compare


Specific Phenotypes

For 8 genes in this experiment

For stress copper (II) chloride dihydrate in Pseudomonas fluorescens FW300-N2E3

For stress copper (II) chloride dihydrate across organisms