Experiment set1IT086 for Acidovorax sp. GW101-3H11

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
Ac3H11_4277 -7.0 -15.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Ac3H11_3860 -6.5 -8.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Ac3H11_769 -6.2 -4.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Ac3H11_3449 -6.1 -4.2 Shikimate kinase I (EC 2.7.1.71) compare
Ac3H11_29 -6.0 -10.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Ac3H11_1527 -6.0 -11.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Ac3H11_1525 -5.9 -19.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Ac3H11_4401 -5.9 -10.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
Ac3H11_2452 -5.8 -6.9 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
Ac3H11_4276 -5.7 -12.7 Probable transmembrane protein compare
Ac3H11_1533 -5.5 -11.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ac3H11_1535 -5.5 -12.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Ac3H11_772 -5.4 -7.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Ac3H11_1528 -5.3 -25.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Ac3H11_2574 -5.2 -10.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Ac3H11_771 -5.2 -8.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Ac3H11_3045 -5.2 -17.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Ac3H11_3553 -5.1 -17.7 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
Ac3H11_767 -5.1 -19.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Ac3H11_206 -5.0 -18.0 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Ac3H11_575 -4.9 -4.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
Ac3H11_3400 -4.9 -9.6 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Ac3H11_2395 -4.8 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Ac3H11_1534 -4.7 -18.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Ac3H11_3241 -4.6 -5.5 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Ac3H11_2403 -4.6 -5.5 Alkanesulfonate utilization operon LysR-family regulator CbI compare
Ac3H11_573 -4.6 -7.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
Ac3H11_4034 -4.6 -11.8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Ac3H11_4278 -4.6 -13.8 Methionine biosynthesis protein MetW compare
Ac3H11_2032 -4.5 -3.2 General secretion pathway protein M compare
Ac3H11_3341 -4.5 -4.4 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Ac3H11_4483 -4.4 -17.2 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD compare
Ac3H11_3398 -4.4 -13.5 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Ac3H11_4705 -4.4 -10.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
Ac3H11_4771 -4.3 -9.5 Glutamate 5-kinase (EC 2.7.2.11) compare
Ac3H11_4484 -4.3 -10.0 Glycine cleavage system transcriptional activator GcvA compare
Ac3H11_4044 -4.3 -9.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Ac3H11_2925 -4.3 -8.6 Chorismate synthase (EC 4.2.3.5) compare
Ac3H11_4092 -4.2 -2.9 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
Ac3H11_577 -4.2 -12.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Ac3H11_4710 -4.1 -24.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Ac3H11_467 -4.1 -7.4 Thioredoxin compare
Ac3H11_2345 -4.0 -16.2 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14) compare
Ac3H11_525 -4.0 -11.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Ac3H11_2038 -4.0 -4.1 General secretion pathway protein G compare
Ac3H11_574 -4.0 -8.7 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Ac3H11_2344 -3.9 -6.9 Transcriptional activator MetR compare
Ac3H11_2036 -3.8 -2.1 General secretion pathway protein I compare
Ac3H11_4093 -3.8 -18.8 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
Ac3H11_4091 -3.6 -7.6 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
Ac3H11_781 -3.4 -4.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Ac3H11_2608 -3.3 -4.9 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Ac3H11_2029 -3.3 -6.0 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) compare
Ac3H11_576 -3.3 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ac3H11_2575 -3.2 -4.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
Ac3H11_3567 -3.1 -14.2 TRAP transporter solute receptor, unknown substrate 6 compare
Ac3H11_4095 -3.1 -12.0 Nitrogen regulation protein NR(I) compare
Ac3H11_526 -3.1 -4.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Ac3H11_2960 -3.0 -1.6 Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Ac3H11_2034 -2.9 -2.2 General secretion pathway protein K compare
Ac3H11_2970 -2.9 -5.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Ac3H11_1909 -2.8 -10.0 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Ac3H11_1908 -2.8 -13.0 Response regulator receiver:Transcriptional regulatory protein, C- terminal compare
Ac3H11_2027 -2.8 -15.7 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Ac3H11_955 -2.8 -12.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Ac3H11_4232 -2.8 -2.8 Outer membrane protein romA compare
Ac3H11_2030 -2.8 -8.6 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) compare
Ac3H11_4711 -2.7 -4.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Ac3H11_2302 -2.7 -4.4 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Ac3H11_3568 -2.7 -11.3 TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 compare
Ac3H11_4669 -2.6 -4.3 AMP nucleosidase (EC 3.2.2.4) compare
Ac3H11_4054 -2.6 -7.3 General secretion pathway protein F / Type II secretory pathway, component PulF compare
Ac3H11_2120 -2.6 -4.8 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
Ac3H11_319 -2.5 -2.8 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
Ac3H11_3569 -2.5 -3.9 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6 compare
Ac3H11_4473 -2.5 -9.5 Twitching motility protein PilT compare
Ac3H11_4858 -2.3 -2.3 Septum site-determining protein MinD compare
Ac3H11_3839 -2.2 -7.5 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Ac3H11_1623 -2.2 -9.5 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) conserved
Ac3H11_1650 -2.1 -1.8 FIG00537534: hypothetical protein compare
Ac3H11_3630 -2.1 -4.7 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Ac3H11_578 -2.1 -4.7 Putative sulfate permease compare
Ac3H11_2059 -2.1 -8.9 Transaldolase (EC 2.2.1.2) compare
Ac3H11_376 -1.9 -1.5 DNA-binding protein HU-beta compare
Ac3H11_3926 -1.9 -2.6 putative membrane protein compare
Ac3H11_268 -1.8 -3.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Ac3H11_456 -1.8 -2.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Ac3H11_4956 -1.8 -6.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Ac3H11_3399 -1.8 -3.6 Probable transmembrane protein compare
Ac3H11_4024 -1.7 -8.0 Sugar kinases, ribokinase family compare
Ac3H11_1133 -1.7 -1.2 hypothetical protein compare
Ac3H11_3827 -1.7 -4.6 Aspartate 1-decarboxylase (EC 4.1.1.11) compare
Ac3H11_1955 -1.7 -4.6 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
Ac3H11_462 -1.6 -2.2 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Ac3H11_4925 -1.6 -4.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Ac3H11_4450 -1.6 -1.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Ac3H11_2571 -1.5 -3.3 Outer membrane protein A precursor compare
Ac3H11_2035 -1.5 -1.6 General secretion pathway protein J compare
Ac3H11_2042 -1.5 -10.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Ac3H11_2033 -1.5 -2.4 General secretion pathway protein L compare
Ac3H11_1453 -1.5 -3.0 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
Ac3H11_4264 -1.5 -5.1 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Ac3H11_1000 -1.5 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Ac3H11_3155 -1.4 -6.5 Putative alkanesulfonate metabolism utilization regulator compare
Ac3H11_4709 -1.4 -10.3 Transposase and inactivated derivatives compare
Ac3H11_3838 -1.4 -5.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Ac3H11_3240 -1.4 -2.0 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Ac3H11_4828 -1.4 -2.0 Ferredoxin compare
Ac3H11_3837 -1.4 -7.8 Quinolinate synthetase (EC 2.5.1.72) compare
Ac3H11_3707 -1.4 -3.8 Membrane-associated phospholipid phosphatase (EC 3.1.3.27) compare
Ac3H11_42 -1.4 -3.3 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
Ac3H11_2604 -1.4 -1.6 Granule-associated protein compare
Ac3H11_2464 -1.3 -4.7 ATPase component BioM of energizing module of biotin ECF transporter compare
Ac3H11_3687 -1.3 -1.4 Urease accessory protein UreE compare
Ac3H11_2272 -1.3 -7.2 Biotin synthase (EC 2.8.1.6) compare
Ac3H11_2320 -1.3 -5.7 Transcriptional regulator, XRE family compare
Ac3H11_3765 -1.3 -1.3 Transcriptional regulator, IclR family compare
Ac3H11_458 -1.3 -1.9 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Ac3H11_1797 -1.2 -2.2 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
Ac3H11_4070 -1.2 -1.9 hypothetical protein compare
Ac3H11_362 -1.2 -6.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
Ac3H11_977 -1.2 -2.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Ac3H11_3464 -1.2 -1.6 hypothetical protein compare
Ac3H11_1957 -1.2 -3.6 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) compare
Ac3H11_1784 -1.2 -2.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Ac3H11_989 -1.2 -3.1 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Ac3H11_770 -1.2 -2.3 Lysine exporter protein (LYSE/YGGA) compare
Ac3H11_3944 -1.2 -2.1 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Ac3H11_2456 -1.2 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Ac3H11_601 -1.1 -1.4 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Ac3H11_3538 -1.1 -1.3 hypothetical protein compare
Ac3H11_4937 -1.1 -2.5 hypothetical protein compare
Ac3H11_888 -1.1 -1.3 hypothetical protein compare
Ac3H11_1689 -1.1 -3.2 Probable low-affinity inorganic phosphate transporter compare
Ac3H11_3925 -1.1 -3.6 FIG00932626: hypothetical protein compare
Ac3H11_2600 -1.1 -8.4 Probable transmembrane protein compare
Ac3H11_768 -1.1 -1.7 Chorismate mutase compare
Ac3H11_727 -1.1 -7.0 RNA polymerase sigma-54 factor RpoN compare
Ac3H11_1676 -1.1 -2.7 hypothetical protein compare
Ac3H11_3425 -1.1 -1.2 hypothetical protein compare
Ac3H11_2274 -1.1 -1.1 Methylmalonyl-CoA epimerase (EC 5.1.99.1) compare
Ac3H11_1044 -1.1 -2.9 tRNA-Leu-TAG compare
Ac3H11_412 -1.1 -3.3 3'-to-5' exoribonuclease RNase R compare
Ac3H11_176 -1.0 -1.2 Transcriptional regulator, MarR family compare
Ac3H11_3792 -1.0 -1.1 hypothetical protein compare
Ac3H11_952 -1.0 -1.2 Cytochrome c551/c552 compare
Ac3H11_2121 -1.0 -1.5 putative c'cytochrome compare
Ac3H11_162 -1.0 -0.9 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_132 -1.0 -8.6 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Ac3H11_1679 -1.0 -1.5 Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) compare
Ac3H11_4271 -1.0 -2.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
Ac3H11_257 -1.0 -2.8 RND efflux system, outer membrane lipoprotein, NodT family compare
Ac3H11_1681 -1.0 -2.4 Similar to cobalamin biosynthesis protein CbiB compare
Ac3H11_3907 -1.0 -2.1 hypothetical protein compare
Ac3H11_4621 -1.0 -1.0 hypothetical protein compare
Ac3H11_3459 -1.0 -6.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Ac3H11_1319 -1.0 -7.2 membrane protein, putative compare
Ac3H11_2483 -1.0 -1.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Ac3H11_1953 -1.0 -1.7 Transcriptional regulator compare
Ac3H11_1690 -1.0 -2.9 Phosphate transport regulator (distant homolog of PhoU) compare
Ac3H11_2115 -0.9 -3.8 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Ac3H11_3462 -0.9 -2.9 Heat-inducible transcription repressor HrcA compare
Ac3H11_320 -0.9 -2.1 AttE component of AttEFGH ABC transport system compare
Ac3H11_3859 -0.9 -2.5 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Ac3H11_2453 -0.9 -1.8 hypothetical protein compare
Ac3H11_1275 -0.9 -0.7 hypothetical protein compare
Ac3H11_723 -0.9 -3.3 Cell division protein FtsN compare
Ac3H11_4432 -0.9 -4.5 Nitrogen regulation protein NR(I) compare
Ac3H11_4202 -0.9 -1.0 hypothetical protein compare
Ac3H11_2169 -0.9 -2.3 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ac3H11_3066 -0.9 -0.9 hypothetical protein compare
Ac3H11_3496 -0.9 -0.8 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) compare
Ac3H11_2002 -0.9 -1.9 C4-type zinc finger protein, DksA/TraR family compare
Ac3H11_827 -0.8 -3.2 Magnesium and cobalt efflux protein CorC compare
Ac3H11_3519 -0.8 -2.0 hypothetical protein compare
Ac3H11_2273 -0.8 -2.3 hypothetical protein compare
Ac3H11_505 -0.8 -3.8 Transcriptional regulator, TetR family compare
Ac3H11_2076 -0.8 -2.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Ac3H11_2524 -0.8 -3.1 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
Ac3H11_720 -0.8 -2.3 putative inner membrane protein compare
Ac3H11_926 -0.8 -1.3 Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-) compare
Ac3H11_3271 -0.8 -2.1 hypothetical protein compare
Ac3H11_2454 -0.8 -2.7 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Ac3H11_683 -0.8 -0.7 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
Ac3H11_4004 -0.8 -6.5 Thiol:disulfide interchange protein DsbC compare
Ac3H11_1956 -0.8 -3.0 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) compare
Ac3H11_207 -0.8 -2.1 FIG137360: hypothetical protein compare
Ac3H11_1514 -0.8 -2.3 LSU ribosomal protein L9p compare
Ac3H11_2123 -0.8 -3.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Ac3H11_2697 -0.8 -0.8 hypothetical protein compare
Ac3H11_1027 -0.8 -0.7 FIG01198047: hypothetical protein compare
Ac3H11_3673 -0.8 -1.5 putative exported protein compare
Ac3H11_4845 -0.8 -3.6 Transcriptional regulator, TetR family compare
Ac3H11_3230 -0.8 -2.0 Gluconate utilization system Gnt-I transcriptional repressor compare
Ac3H11_1814 -0.8 -2.4 low-specificity D-threonine aldolase compare
Ac3H11_4979 -0.8 -2.6 Copper chaperone compare
Ac3H11_1705 -0.8 -2.7 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Ac3H11_4632 -0.7 -3.8 General secretion pathway protein A compare
Ac3H11_1629 -0.7 -1.3 FIG00901576: hypothetical protein compare
Ac3H11_3624 -0.7 -1.8 Probable transmembrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium D,L-Lactate in Acidovorax sp. GW101-3H11

For carbon source Sodium D,L-Lactate across organisms