Experiment set1IT086 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; ShewMM media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS14190 -6.3 -11.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS12510 -6.0 -17.0 FAD-dependent oxidoreductase compare
EX31_RS15020 -6.0 -16.0 ketol-acid reductoisomerase compare
EX31_RS03695 -6.0 -5.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS14500 -5.9 -11.4 orotate phosphoribosyltransferase compare
EX31_RS15005 -5.9 -15.6 dihydroxy-acid dehydratase compare
EX31_RS03685 -5.9 -9.0 3-isopropylmalate dehydrogenase compare
EX31_RS14185 -5.8 -6.9 acetylglutamate kinase compare
EX31_RS13275 -5.8 -11.2 diaminopimelate decarboxylase compare
EX31_RS12515 -5.7 -23.7 glutamate synthase large subunit compare
EX31_RS02530 -5.7 -3.9 ABC transporter ATP-binding protein compare
EX31_RS14200 -5.6 -17.1 phosphoenolpyruvate carboxylase compare
EX31_RS03940 -5.6 -9.4 homoserine kinase compare
EX31_RS04035 -5.6 -10.8 phosphoserine phosphatase compare
EX31_RS13445 -5.6 -12.5 argininosuccinate synthase compare
EX31_RS12400 -5.6 -5.4 RNA polymerase factor sigma-54 compare
EX31_RS14180 -5.5 -15.2 argininosuccinate lyase compare
EX31_RS02690 -5.5 -3.8 pyrroline-5-carboxylate reductase compare
EX31_RS22625 -5.5 -3.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS03690 -5.3 -9.6 3-isopropylmalate dehydratase large subunit compare
EX31_RS12785 -5.3 -13.3 aspartate carbamoyltransferase compare
EX31_RS14215 -5.3 -21.4 cystathionine gamma-synthase compare
EX31_RS03830 -5.3 -16.9 carbamoyl-phosphate synthase large subunit compare
EX31_RS16860 -5.2 -20.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS16855 -5.2 -15.9 phosphoribosylamine--glycine ligase compare
EX31_RS03250 -5.1 -9.8 RNA polymerase-binding protein DksA compare
EX31_RS03935 -5.1 -11.4 threonine synthase compare
EX31_RS13160 -5.1 -12.8 amino-acid N-acetyltransferase compare
EX31_RS23245 -5.1 -15.3 asparagine synthase B compare
EX31_RS21895 -5.0 -16.6 phosphoribosylformylglycinamidine synthase compare
EX31_RS03945 -4.9 -24.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS05785 -4.9 -4.7 superoxide dismutase [Mn] compare
EX31_RS21470 -4.9 -8.8 phosphoglycerate dehydrogenase compare
EX31_RS18530 -4.8 -13.5 leucine-responsive transcriptional regulator Lrp compare
EX31_RS11460 -4.8 -3.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS02515 -4.7 -3.3 PAS domain-containing protein compare
EX31_RS11735 -4.7 -10.5 homoserine O-succinyltransferase compare
EX31_RS03835 -4.7 -10.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS23415 -4.7 -7.1 citrate synthase compare
EX31_RS09970 -4.6 -6.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS15880 -4.6 -10.8 nitrogen regulation protein NR(I) compare
EX31_RS02520 -4.6 -4.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS14205 -4.6 -15.4 methylenetetrahydrofolate reductase compare
EX31_RS22695 -4.6 -9.7 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11440 -4.5 -5.4 histidinol dehydrogenase compare
EX31_RS20495 -4.5 -10.9 outer membrane protein assembly factor BamB compare
EX31_RS09975 -4.5 -6.9 tryptophan synthase subunit beta compare
EX31_RS22750 -4.5 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS12825 -4.5 -9.5 ornithine carbamoyltransferase compare
EX31_RS09980 -4.5 -6.1 tryptophan synthase subunit alpha compare
EX31_RS20975 -4.4 -8.4 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS07870 -4.4 -10.9 adenylyl-sulfate kinase compare
EX31_RS20450 -4.3 -5.2 IMP dehydrogenase compare
EX31_RS24385 -4.3 -3.0 dihydroorotase compare
EX31_RS19570 -4.3 -14.2 amidophosphoribosyltransferase compare
EX31_RS20980 -4.2 -8.6 glutamate 5-kinase compare
EX31_RS09965 -4.2 -6.5 anthranilate phosphoribosyltransferase compare
EX31_RS09855 -4.2 -5.0 orotidine-5'-phosphate decarboxylase compare
EX31_RS11465 -4.2 -5.7 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS18095 -4.2 -4.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS11445 -4.1 -6.2 histidinol-phosphate transaminase compare
EX31_RS20175 -4.1 -9.8 cysteine synthase A compare
EX31_RS07585 -4.1 -11.4 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS11450 -4.0 -5.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07895 -3.9 -12.3 phosphoadenylyl-sulfate reductase compare
EX31_RS14310 -3.8 -4.6 6-phosphofructokinase compare
EX31_RS22620 -3.8 -6.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS18540 -3.8 -3.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09955 -3.7 -7.9 anthranilate synthase component 1 compare
EX31_RS22250 -3.7 -5.6 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS09890 -3.7 -12.1 HTH-type transcriptional regulator CysB compare
EX31_RS11455 -3.6 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS11470 -3.6 -4.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS15870 -3.6 -3.5 glutamate--ammonia ligase compare
EX31_RS18255 -3.6 -2.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS18525 -3.5 -3.4 DNA translocase FtsK compare
EX31_RS04630 -3.5 -16.7 aspartate aminotransferase family protein compare
EX31_RS22245 -3.4 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS06055 -3.4 -5.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS07590 -3.4 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS03680 -3.4 -14.7 2-isopropylmalate synthase compare
EX31_RS09960 -3.3 -6.3 glutamine amidotransferase compare
EX31_RS14340 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS03775 -3.3 -5.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS08745 -3.3 -3.1 50S ribosomal protein L9 compare
EX31_RS11675 -3.2 -3.1 Holliday junction branch migration protein RuvA compare
EX31_RS23440 -3.2 -3.1 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14335 -3.2 -2.2 serine O-acetyltransferase compare
EX31_RS07955 -3.1 -17.9 GTP diphosphokinase compare
EX31_RS07900 -3.0 -17.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS03790 -3.0 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS07880 -2.9 -18.0 sulfate adenylyltransferase subunit CysD compare
EX31_RS10115 -2.9 -10.8 formyltetrahydrofolate deformylase compare
EX31_RS07905 -2.9 -16.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07595 -2.8 -9.9 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS19655 -2.7 -5.9 beta-ketoacyl-ACP synthase I compare
EX31_RS20735 -2.7 -5.8 exodeoxyribonuclease V subunit beta compare
EX31_RS11815 -2.6 -11.4 glucose-6-phosphate isomerase compare
EX31_RS15155 -2.5 -3.4 diaminopimelate epimerase compare
EX31_RS15010 -2.5 -9.7 threonine ammonia-lyase, biosynthetic compare
EX31_RS08720 -2.4 -14.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07875 -2.4 -16.0 sulfate adenylyltransferase subunit CysN compare
EX31_RS25365 -2.4 -2.3 50S ribosomal protein L31 compare
EX31_RS13815 -2.4 -1.6 ribonuclease T compare
EX31_RS04725 -2.4 -5.6 shikimate kinase AroK compare
EX31_RS11435 -2.4 -6.5 ATP phosphoribosyltransferase compare
EX31_RS20180 -2.3 -3.5 phosphocarrier protein Hpr compare
EX31_RS06060 -2.3 -5.8 phosphate ABC transporter permease PstA compare
EX31_RS23485 -2.3 -2.7 colicin uptake protein TolR compare
EX31_RS06070 -2.3 -10.3 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS15875 -2.2 -10.1 nitrogen regulation protein NR(II) compare
EX31_RS03480 -2.1 -4.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS10030 -2.0 -2.6 YciY family protein compare
EX31_RS04325 -2.0 -1.4 hypothetical protein compare
EX31_RS06065 -2.0 -8.3 phosphate ABC transporter permease PstC compare
EX31_RS12875 -2.0 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS03035 -1.9 -7.5 LysE family transporter compare
EX31_RS02365 -1.9 -1.8 hypothetical protein compare
EX31_RS03030 -1.9 -9.1 helix-turn-helix transcriptional regulator compare
EX31_RS20190 -1.9 -2.2 PTS glucose transporter subunit IIA compare
EX31_RS11525 -1.9 -2.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS06150 -1.9 -12.9 transcriptional regulator AsnC compare
EX31_RS23125 -1.8 -2.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS23495 -1.8 -7.1 Tol-Pal system protein TolB compare
EX31_RS25410 -1.8 -1.2 transposase compare
EX31_RS09550 -1.7 -1.9 flagellar assembly protein FliH compare
EX31_RS04925 -1.7 -3.9 Fe-S biogenesis protein NfuA compare
EX31_RS22430 -1.7 -2.3 hemolysin expression modulator Hha compare
EX31_RS11540 -1.7 -4.2 dCTP deaminase compare
EX31_RS19610 -1.7 -7.0 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS03400 -1.6 -5.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS11010 -1.6 -1.1 DgsA anti-repressor MtfA compare
EX31_RS21400 -1.6 -5.3 transketolase compare
EX31_RS07560 -1.6 -12.7 ATP-dependent chaperone ClpB compare
EX31_RS11110 -1.6 -1.4 RidA family protein compare
EX31_RS13045 -1.6 -10.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS02525 -1.5 -5.9 ABC transporter permease compare
EX31_RS23490 -1.5 -2.8 cell envelope integrity protein TolA compare
EX31_RS14325 -1.5 -8.7 envelope stress sensor histidine kinase CpxA compare
EX31_RS10100 -1.5 -2.2 two-component system response regulator RssB compare
EX31_RS25375 -1.5 -5.2 ilv operon leader peptide compare
EX31_RS09925 -1.5 -2.1 alpha-ribazole phosphatase compare
EX31_RS11690 -1.5 -1.9 dihydroneopterin triphosphate diphosphatase compare
EX31_RS19420 -1.5 -3.0 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS17295 -1.5 -1.8 hypothetical protein compare
EX31_RS25415 -1.5 -1.0 helix-turn-helix domain-containing protein compare
EX31_RS08535 -1.5 -2.9 30S ribosome-binding factor RbfA compare
EX31_RS04390 -1.5 -2.8 DNA polymerase III subunit chi compare
EX31_RS08150 -1.5 -9.7 inorganic triphosphatase compare
EX31_RS07830 -1.5 -4.6 murein hydrolase activator NlpD compare
EX31_RS05145 -1.4 -7.0 inorganic phosphate transporter PitA compare
EX31_RS14990 -1.4 -9.0 acetolactate synthase 2 catalytic subunit compare
EX31_RS09650 -1.4 -2.1 GrxA family glutaredoxin compare
EX31_RS09895 -1.4 -2.9 type I DNA topoisomerase compare
EX31_RS16845 -1.4 -3.6 DNA-binding protein HU-alpha compare
EX31_RS01605 -1.4 -2.6 tail protein compare
EX31_RS22740 -1.4 -6.9 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS12500 -1.4 -8.5 stringent starvation protein A compare
EX31_RS19480 -1.4 -5.6 acetate kinase compare
EX31_RS23990 -1.4 -1.6 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS25340 -1.4 -3.9 hypothetical protein compare
EX31_RS03645 -1.4 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS16645 -1.4 -1.1 DUF1471 domain-containing protein compare
EX31_RS02385 -1.4 -1.6 hypothetical protein compare
EX31_RS23480 -1.4 -3.6 Tol-Pal system protein TolQ compare
EX31_RS23315 -1.4 -5.1 replication initiation negative regulator SeqA compare
EX31_RS21850 -1.4 -2.1 pyridoxine 5'-phosphate synthase compare
EX31_RS21805 -1.4 -2.3 anti-sigma-E factor RseA compare
EX31_RS14620 -1.3 -2.2 SCP2 domain-containing protein compare
EX31_RS21190 -1.3 -3.2 ribonuclease HI compare
EX31_RS11355 -1.3 -1.7 chemotaxis protein CheY compare
EX31_RS06140 -1.3 -8.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS19485 -1.3 -5.2 phosphate acetyltransferase compare
EX31_RS03220 -1.3 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS15015 -1.3 -3.3 HTH-type transcriptional activator IlvY compare
EX31_RS19600 -1.3 -5.6 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS26025 -1.3 -1.9 conjugal transfer protein TraK compare
EX31_RS07135 -1.3 -1.6 hypothetical protein compare
EX31_RS11315 -1.3 -2.3 flagellar basal body rod protein FlgB compare
EX31_RS25875 -1.3 -2.5 hypothetical protein compare
EX31_RS00920 -1.3 -2.0 DUF1493 family protein compare
EX31_RS15910 -1.3 -7.0 thiol:disulfide interchange protein DsbA compare
EX31_RS07785 -1.3 -0.9 carbon storage regulator CsrA compare
EX31_RS01530 -1.3 -1.6 hypothetical protein compare
EX31_RS11275 -1.3 -4.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
EX31_RS06000 -1.2 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS15555 -1.2 -2.7 amino acid ABC transporter ATP-binding protein compare
EX31_RS25370 -1.2 -7.7 HTH-type transcriptional regulator MetR compare
EX31_RS25125 -1.2 -2.7 thr operon leader peptide compare
EX31_RS18010 -1.2 -1.6 methylglyoxal synthase compare
EX31_RS20185 -1.2 -4.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS09470 -1.2 -2.4 flagella biosynthesis regulatory protein FliT compare
EX31_RS19405 -1.1 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS14550 -1.1 -1.8 Trk system potassium transporter TrkH compare
EX31_RS19435 -1.1 -1.9 NADH-quinone oxidoreductase subunit A compare
EX31_RS09700 -1.1 -2.5 GlpM family protein compare
EX31_RS01615 -1.1 -1.9 DNA breaking-rejoining protein compare
EX31_RS13480 -1.1 -4.1 site-specific tyrosine recombinase XerD compare
EX31_RS26005 -1.1 -2.8 transposase compare
EX31_RS23500 -1.1 -3.4 peptidoglycan-associated lipoprotein Pal compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms