Experiment set1IT086 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
BT2389 -6.7 -4.6 putative transport protein (NCBI ptt file) compare
BT1379 -6.6 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT3355 -6.6 -6.4 putative auxin-regulated protein (NCBI ptt file) compare
BT1859 -6.5 -4.5 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT1607 -6.4 -4.4 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT3761 -6.3 -4.4 N-succinylglutamate synthase (from data) compare
BT0528 -6.3 -4.4 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT1843 -6.3 -7.5 adenylosuccinate synthetase (NCBI ptt file) compare
BT3733 -6.2 -10.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT0200 -6.1 -4.2 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT1377 -6.1 -4.2 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT3933 -6.0 -8.3 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT3760 -6.0 -4.2 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT4211 -5.9 -4.1 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT0202 -5.9 -4.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT2076 -5.9 -9.9 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0203 -5.9 -4.1 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT2415 -5.9 -9.9 aspartate aminotransferase (NCBI ptt file) compare
BT2837 -5.9 -11.9 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT2074 -5.9 -8.0 ketol-acid reductoisomerase (NCBI ptt file) compare
BT2078 -5.9 -9.8 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT2003 -5.8 -3.6 putative membrane peptidase (NCBI ptt file) compare
BT0793 -5.8 -4.0 xylose isomerase (NCBI ptt file) compare
BT1857 -5.8 -6.9 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT1152 -5.8 -5.6 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT1153 -5.8 -5.6 phosphoserine aminotransferase (NCBI ptt file) compare
BT3758 -5.8 -4.0 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT0529 -5.7 -4.0 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT2046 -5.7 -4.3 putative cardiolipin synthetase (NCBI ptt file) compare
BT3395 -5.7 -8.7 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT3719 -5.7 -6.7 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT1374 -5.6 -8.6 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT3549 -5.6 -5.5 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT1733 -5.6 -8.6 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT0201 -5.6 -3.9 histidinol dehydrogenase (NCBI ptt file) compare
BT3759 -5.6 -9.3 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT0530 -5.5 -6.6 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3193 -5.5 -11.3 putative coenzyme A transferase (NCBI ptt file) compare
BT2080 -5.5 -6.6 L-cysteine desulfidase cdsB (from data) compare
BT2403 -5.5 -11.8 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2836 -5.5 -14.2 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT2401 -5.5 -6.5 threonine synthase (NCBI ptt file) compare
BT3718 -5.4 -9.1 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT2077 -5.4 -7.4 acetolactate synthase large subunit (NCBI ptt file) compare
BT0533 -5.4 -3.7 tryptophan synthase beta chain (NCBI ptt file) compare
BT3936 -5.4 -3.7 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1853 -5.3 -7.0 putative sulfatase (NCBI ptt file) compare
BT1970 -5.2 -8.0 glutamate dehydrogenase (NCBI ptt file) compare
BT1860 -5.2 -5.1 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT0527 -5.2 -5.0 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3757 -5.2 -7.9 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT0792 -5.2 -6.1 xylulokinase (EC 2.7.1.17) (from data) conserved
BT3717 -5.1 -6.1 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1858 -5.0 -9.7 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT2402 -5.0 -11.7 homoserine phosphotransferase HomK (from data) compare
BT3253 -5.0 -4.9 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT0892 -5.0 -2.6 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT1476 -4.9 -8.2 aspartate aminotransferase (NCBI ptt file) compare
BT4339 -4.9 -6.7 glutamine synthetase (NCBI ptt file) compare
BT1861 -4.8 -9.3 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT3184 -4.8 -13.2 L-aspartate oxidase (NCBI ptt file) compare
BT0532 -4.7 -7.9 anthranilate synthase component I (NCBI ptt file) compare
BT2129 -4.7 -9.0 aspartate--ammonia ligase (NCBI ptt file) compare
BT3806 -4.6 -4.7 conserved hypothetical protein (NCBI ptt file) compare
BT3361 -4.6 -10.3 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT1381 -4.6 -9.8 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT1746 -4.6 -3.0 conserved hypothetical protein (NCBI ptt file) compare
BT3363 -4.5 -4.5 lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file) compare
BT0794 -4.5 -8.6 D-xylose-proton symporter (D-xylose transporter) (NCBI ptt file) conserved
BT1979 -4.3 -6.3 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT1747 -4.2 -9.7 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT0531 -4.1 -4.6 anthranilate synthase component II (NCBI ptt file) compare
BT1380 -4.0 -3.3 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT1222 -3.9 -5.3 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT1444 -3.8 -4.6 conserved hypothetical protein (NCBI ptt file) compare
BT3918 -3.8 -3.1 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT3845 -3.8 -6.6 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT0700 -3.6 -9.0 GTP pyrophosphokinase (NCBI ptt file) compare
BT3320 -3.6 -5.7 dihydrodipicolinate reductase (NCBI ptt file) compare
BT0241 -3.6 -3.5 hypothetical protein (NCBI ptt file) compare
BT2946 -3.5 -3.1 putative glycosyltransferase (NCBI ptt file) compare
BT3866 -3.5 -14.2 ammonium-dependent carbamoyl phosphate synthetase CarB2 (EC 6.3.4.16) (from data) compare
BT0771 -3.5 -7.8 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT3911 -3.5 -6.0 malate dehydrogenase (NCBI ptt file) compare
BT3978 -3.5 -9.7 putative cardiolipin synthetase (NCBI ptt file) compare
BT4649 -3.4 -2.4 hypothetical protein (NCBI ptt file) compare
BT1220 -3.4 -5.6 6-phosphogluconolactonase (NCBI ptt file) compare
BT3387 -3.4 -2.2 putative polysaccharide deacetylase (NCBI ptt file) compare
BT3935 -3.4 -8.1 aminotransferase (NCBI ptt file) compare
BT0891 -3.4 -3.9 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT3164 -3.4 -7.5 quinolinate synthetase A (NCBI ptt file) compare
BT0652 -3.2 -2.9 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) compare
BT2161 -3.2 -2.5 50S ribosomal protein L9 (NCBI ptt file) compare
BT4551 -3.2 -4.9 putative GTPase, ThdF family (NCBI ptt file) compare
BT0738 -3.1 -4.4 serine hydroxymethyltransferase (NCBI ptt file) compare
BT3077 -3.1 -2.4 ribonuclease R (NCBI ptt file) compare
BT3211 -3.0 -2.9 conserved hypothetical protein (NCBI ptt file) compare
BT1442 -3.0 -7.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT4562 -3.0 -2.5 hypothetical protein (NCBI ptt file) compare
BT1446 -3.0 -9.5 dethiobiotin synthetase (NCBI ptt file) compare
BT1375 -3.0 -10.2 aspartokinase (NCBI ptt file) compare
BT4466 -2.9 -2.6 hypothetical protein (NCBI ptt file) compare
BT1445 -2.9 -5.9 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT1326 -2.9 -3.9 TPR-domain containing protein (NCBI ptt file) compare
BT1956 -2.7 -8.0 putative cell surface protein (NCBI ptt file) compare
BT1524 -2.7 -3.0 hypothetical protein (NCBI ptt file) compare
BT1443 -2.7 -6.5 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT3762 -2.7 -4.1 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT4097 -2.5 -3.9 Trk system K+ uptake protein trkH (NCBI ptt file) compare
BT0900 -2.4 -5.0 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT1421 -2.4 -3.4 hypothetical protein (NCBI ptt file) compare
BT3369 -2.4 -4.3 putative glycosyltransferase (NCBI ptt file) compare
BT2781 -2.4 -5.3 putative mannose-1-phosphate guanylyltransferase (NCBI ptt file) compare
BT1378 -2.3 -2.2 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT1972 -2.3 -9.4 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT1256 -2.3 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1293 -2.3 -11.2 alpha-glucan phosphorylase (NCBI ptt file) compare
BT4590 -2.2 -4.2 conserved hypothetical protein (NCBI ptt file) compare
BT4610 -2.2 -2.8 RecA (NCBI ptt file) compare
BT0647 -2.2 -3.2 thiamine phosphate pyrophosphorylase (NCBI ptt file) compare
BT1193 -2.1 -4.0 conserved hypothetical protein (NCBI ptt file) compare
BT2527 -2.1 -7.3 uridine kinase (uridine monophosphokinase) (NCBI ptt file) compare
BT4258 -2.1 -6.7 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
p5482_02 -2.0 -3.4 hypothetical protein (NCBI) compare
BT4029 -2.0 -3.1 hypothetical protein (NCBI ptt file) compare
BT3394 -2.0 -6.4 putative arginine decarboxylase (NCBI ptt file) compare
BT2059 -2.0 -2.5 TonB (NCBI ptt file) compare
BT3981 -2.0 -2.4 hypothetical protein (NCBI ptt file) compare
BT4098 -1.9 -2.1 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT4644 -1.9 -3.1 putative anti-sigma factor (NCBI ptt file) compare
BT1844 -1.9 -3.2 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT1954 -1.9 -5.3 putative surface layer protein (NCBI ptt file) compare
BT2843 -1.9 -4.4 integrase (NCBI ptt file) compare
BT4699 -1.9 -4.8 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT1419 -1.8 -3.1 hypothetical protein (NCBI ptt file) compare
BT1564 -1.8 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT0747 -1.8 -4.3 putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file) compare
BT1962 -1.8 -3.4 hypothetical protein (NCBI ptt file) compare
BT1539 -1.8 -2.3 cytidine deaminase (NCBI ptt file) compare
BT1955 -1.8 -7.8 putative cell wall biogenesis protein (NCBI ptt file) compare
BT1608 -1.8 -6.2 capsule biosynthesis protein capA (NCBI ptt file) compare
BT2075 -1.8 -3.7 acyl-ACP thioesterase (NCBI ptt file) compare
BT0648 -1.7 -4.3 molybdopterin biosynthesis protein (NCBI ptt file) compare
BT1957 -1.7 -6.5 hypothetical protein (NCBI ptt file) compare
BT4310 -1.7 -7.4 NADPH-dependent glutamate synthase small chain (NCBI ptt file) compare
BT0927 -1.6 -2.1 two-component system sensor histidine kinase (NCBI ptt file) compare
BT1420 -1.6 -5.4 conserved hypothetical protein (NCBI ptt file) compare
BT3035 -1.6 -7.6 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT4322 -1.6 -4.1 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT2845 -1.6 -6.9 conserved hypothetical protein (NCBI ptt file) compare
BT4490 -1.6 -3.1 hypothetical protein (NCBI ptt file) compare
BT0322 -1.5 -3.2 putative oxidoreductase (NCBI ptt file) compare
BT2091 -1.5 -4.9 methylmalonyl-CoA mutase small subunit (NCBI ptt file) compare
BT3554 -1.5 -3.3 conserved hypothetical protein (NCBI ptt file) compare
BT4563 -1.5 -3.3 hypothetical protein (NCBI ptt file) compare
BT0548 -1.5 -1.9 diaminopimelate epimerase (NCBI ptt file) compare
BT3268 -1.5 -3.1 glucose-inhibited division protein A (NCBI ptt file) compare
BT2090 -1.5 -5.6 methylmalonyl-CoA mutase large subunit (NCBI ptt file) compare
BT2042 -1.5 -2.3 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT1881 -1.5 -3.7 purine nucleoside phosphorylase I (NCBI ptt file) compare
BT1953 -1.5 -5.1 putative TonB-linked outer membrane receptor (NCBI ptt file) compare
BT1221 -1.5 -4.3 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT2103 -1.5 -3.6 transcriptional regulator (NCBI ptt file) compare
BT0572 -1.5 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT3912 -1.5 -3.5 conserved hypothetical protein (NCBI ptt file) compare
BT1270 -1.5 -4.6 putative Na+/H+ antiporter (NCBI ptt file) compare
BT4003 -1.4 -2.0 stationary-phase survival protein SurE (NCBI ptt file) compare
BT4041 -1.4 -4.2 conserved hypothetical protein (NCBI ptt file) compare
BT2742 -1.4 -0.8 integrase, site-specific recombinase (NCBI ptt file) compare
BT1835 -1.4 -3.0 biotin synthase (NCBI ptt file) compare
BT3481 -1.4 -1.3 putative glutaminase A (NCBI ptt file) compare
BT3573 -1.4 -2.9 hypothetical protein (NCBI ptt file) compare
BT1058 -1.4 -6.0 two-component system sensor histidine kinase (NCBI ptt file) compare
BT3072 -1.3 -3.8 collagenase precursor (NCBI ptt file) compare
BT0376 -1.3 -2.0 putative transcriptional regulator (NCBI ptt file) compare
BT4400 -1.3 -1.5 hypothetical protein (NCBI ptt file) compare
BT0598 -1.3 -4.1 putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file) compare
BT4360 -1.3 -3.7 hypothetical protein (NCBI ptt file) compare
BT1336 -1.3 -3.5 putative translation initiation inhibitor (NCBI ptt file) compare
BT3770 -1.3 -2.8 transcriptional regulator (NCBI ptt file) compare
BT3370 -1.2 -3.5 putative glycosyltransferase yibD (NCBI ptt file) compare
BT0631 -1.2 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0791 -1.2 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT0032 -1.2 -1.8 hypothetical protein (NCBI ptt file) compare
BT3550 -1.2 -3.1 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare
BT2153 -1.2 -1.9 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT4587 -1.2 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT0555 -1.2 -4.9 amidophosphoribosyltransferase (NCBI ptt file) compare
BT1837 -1.2 -4.5 putative GTP-binding protein, putative GTPase (NCBI ptt file) compare
BT3368 -1.2 -1.3 putative glycosyltransferase (NCBI ptt file) compare
BT1836 -1.2 -5.8 thiamine biosynthesis protein ThiH (NCBI ptt file) compare
BT0896 -1.2 -2.5 putative patatin-like phospholipase (NCBI ptt file) compare
BT3374 -1.2 -3.4 putative carbamoyl-phosphate-synthetase (NCBI ptt file) compare
BT1808 -1.2 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT4570 -1.2 -2.4 hypothetical protein (NCBI ptt file) compare
BT0443 -1.2 -1.9 thermostable beta-glucosidase B (NCBI ptt file) compare
BT4049 -1.2 -3.2 putative ArgK protein with ATPase and kinase domains (NCBI ptt file) compare
BT2247 -1.1 -2.0 putative ryanodine receptor (NCBI ptt file) compare
BT0649 -1.1 -2.6 thiamine biosynthesis protein ThiH (NCBI ptt file) compare
BT2418 -1.1 -3.0 hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Xylose in Bacteroides thetaiotaomicron VPI-5482

For carbon source D-Xylose across organisms