Experiment set1IT085 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cobalt chloride hexahydrate 0.32 mM

200 most important genes:

  gene name fitness t score description  
AO353_26685 -3.6 -7.2 cobalt efflux pump (from data) conserved
AO353_13225 -3.5 -3.4 50S ribosomal protein L9 compare
AO353_21625 -3.3 -3.2 Fe/S biogenesis protein NfuA compare
AO353_03595 -3.2 -5.3 hypothetical protein compare
AO353_06040 -3.2 -4.3 exodeoxyribonuclease V subunit alpha compare
AO353_04185 -3.1 -8.5 DeoR family transcriptional regulator compare
AO353_03590 -3.0 -4.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_17970 -2.9 -16.3 hypothetical protein compare
AO353_07355 -2.9 -5.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09060 -2.9 -3.9 hypothetical protein compare
AO353_03580 -2.9 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_05625 -2.8 -2.7 transcription elongation factor GreA compare
AO353_07075 -2.8 -6.2 elongation factor Tu compare
AO353_14150 -2.8 -2.7 peptidylprolyl isomerase compare
AO353_12420 -2.8 -3.8 predicted FeS cluster maintenance protein (from data) compare
AO353_13200 -2.7 -11.7 exoribonuclease R compare
AO353_23495 -2.7 -3.5 SAM-dependent methyltransferase compare
AO353_08110 -2.7 -7.4 glutathione synthetase compare
AO353_02570 -2.6 -4.3 hypothetical protein compare
AO353_13100 -2.6 -2.5 GTPase RsgA compare
AO353_20185 -2.6 -7.3 DNA-binding protein compare
AO353_14740 -2.5 -4.1 GTP-binding protein compare
AO353_14585 -2.4 -6.1 ribosomal-protein-alanine acetyltransferase compare
AO353_11730 -2.4 -9.8 glutamate--cysteine ligase compare
AO353_16940 -2.4 -6.9 deoxycytidine triphosphate deaminase compare
AO353_11915 -2.4 -7.6 agmatine deiminase compare
AO353_05690 -2.3 -4.4 SsrA-binding protein compare
AO353_06050 -2.3 -7.3 exodeoxyribonuclease V subunit gamma compare
AO353_19060 -2.2 -5.2 CysB family transcriptional regulator compare
AO353_06045 -2.2 -8.0 exodeoxyribonuclease V subunit beta compare
AO353_24340 -2.2 -2.6 TetR family transcriptional regulator compare
AO353_09285 -2.2 -10.4 reactive intermediate/imine deaminase compare
AO353_08420 -2.1 -11.8 ATPase P conserved
AO353_08465 -2.1 -12.5 phosphoenolpyruvate-protein phosphotransferase compare
AO353_08885 -2.1 -12.3 polyphosphate kinase compare
AO353_04355 -2.0 -2.7 homoserine dehydrogenase compare
AO353_03710 -2.0 -4.0 formyltetrahydrofolate deformylase compare
AO353_27650 -2.0 -4.6 cell division protein FtsK compare
AO353_05465 -2.0 -11.5 flavodoxin compare
AO353_02810 -2.0 -7.4 histidine kinase compare
AO353_01355 -1.9 -8.2 3-oxoacyl-ACP synthase compare
AO353_09000 -1.9 -6.2 argininosuccinate lyase compare
AO353_00825 -1.9 -4.3 porin compare
AO353_26390 -1.9 -2.2 glyoxalase compare
AO353_07645 -1.8 -1.8 sarcosine oxidase subunit gamma compare
AO353_09560 -1.8 -2.4 type VI secretion protein compare
AO353_13580 -1.8 -3.5 copper resistance protein CopZ compare
AO353_05550 -1.8 -6.1 pseudouridine synthase compare
AO353_05130 -1.8 -1.8 anti-anti-sigma factor compare
AO353_04325 -1.8 -2.6 hypothetical protein compare
AO353_00515 -1.8 -4.0 hypothetical protein compare
AO353_09050 -1.7 -4.1 recombinase XerC compare
AO353_12090 -1.7 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_14775 -1.7 -6.3 hypothetical protein compare
AO353_04175 -1.7 -4.9 glycerol uptake facilitator GlpF compare
AO353_00430 -1.7 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13130 -1.7 -3.0 N-acetylmuramoyl-L-alanine amidase compare
AO353_13905 -1.7 -8.2 tRNA (uracil-5-)-methyltransferase conserved
AO353_11750 -1.7 -2.0 ATPase compare
AO353_07315 -1.6 -2.3 rRNA methyltransferase compare
AO353_17640 -1.6 -1.7 serine peptidase compare
AO353_15825 -1.6 -2.3 serine acetyltransferase compare
AO353_08365 -1.6 -5.8 L-cystine transporter tcyP compare
AO353_09240 -1.6 -3.9 acetylglutamate kinase compare
AO353_01485 -1.6 -6.6 ABC transporter compare
AO353_14940 -1.6 -3.7 malate:quinone oxidoreductase compare
AO353_09320 -1.6 -7.3 ATP-dependent DNA helicase RecG compare
AO353_20660 -1.6 -4.1 pseudouridine synthase compare
AO353_12935 -1.6 -3.3 glycosyltransferase compare
AO353_03585 -1.6 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_08425 -1.5 -4.9 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO353_10985 -1.5 -2.4 hypothetical protein compare
AO353_07325 -1.5 -2.1 diadenosine tetraphosphatase compare
AO353_10445 -1.5 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_00310 -1.5 -7.2 transaldolase compare
AO353_13140 -1.5 -4.8 tRNA dimethylallyltransferase compare
AO353_21595 -1.5 -5.8 serine/threonine protein kinase compare
AO353_18500 -1.5 -2.3 chemotaxis protein CheY compare
AO353_21465 -1.5 -3.0 cation:proton antiporter compare
AO353_08880 -1.5 -2.5 exopolyphosphatase compare
AO353_04565 -1.4 -4.8 nucleoid-associated protein compare
AO353_02720 -1.4 -4.8 cysteine synthase compare
AO353_20170 -1.4 -4.6 trigger factor compare
AO353_07495 -1.4 -9.7 acyl-CoA dehydrogenase compare
AO353_13720 -1.4 -8.5 arginine decarboxylase compare
AO353_02710 -1.3 -8.5 (p)ppGpp synthetase compare
AO353_05280 -1.3 -2.6 4-carboxymuconolactone decarboxylase compare
AO353_17850 -1.3 -3.1 SAM-dependent methyltransferase compare
AO353_16450 -1.3 -7.8 protein-PII uridylyltransferase compare
AO353_08350 -1.3 -5.2 hypothetical protein compare
AO353_05420 -1.3 -1.9 peptide chain release factor 3 compare
AO353_16530 -1.3 -1.7 ribonuclease HII compare
AO353_09250 -1.3 -2.5 exodeoxyribonuclease III compare
AO353_09040 -1.3 -1.0 diaminopimelate epimerase compare
AO353_22645 -1.3 -2.0 hypothetical protein compare
AO353_01480 -1.3 -6.1 hypothetical protein compare
AO353_28960 -1.3 -2.8 Fis family transcriptional regulator compare
AO353_16440 -1.3 -2.8 ArsC family transcriptional regulator compare
AO353_26680 -1.3 -2.8 hypothetical protein compare
AO353_11770 -1.2 -1.8 molecular chaperone Hsp33 compare
AO353_10510 -1.2 -1.8 benzoate transporter compare
AO353_24190 -1.2 -3.3 hypothetical protein compare
AO353_14420 -1.2 -3.5 molecular chaperone DnaK compare
AO353_21410 -1.2 -2.0 hypothetical protein compare
AO353_18120 -1.2 -2.4 hypothetical protein compare
AO353_00650 -1.2 -2.3 cytochrome biogenesis protein compare
AO353_23955 -1.2 -3.0 RND transporter compare
AO353_18135 -1.2 -1.9 hypothetical protein compare
AO353_12870 -1.2 -7.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_16805 -1.2 -4.8 recombinase RecA compare
AO353_15260 -1.2 -3.9 stringent starvation protein A compare
AO353_00460 -1.2 -2.2 TetR family transcriptional regulator compare
AO353_17980 -1.2 -6.9 siderophore synthetase compare
AO353_27720 -1.2 -3.6 cupin compare
AO353_07445 -1.2 -2.0 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_12270 -1.2 -2.3 histidine ammonia-lyase compare
AO353_25745 -1.1 -3.1 LysR family transcriptional regulator compare
AO353_02015 -1.1 -5.0 acetyltransferase compare
AO353_27470 -1.1 -5.1 sodium:proton antiporter compare
AO353_15785 -1.1 -5.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_04490 -1.1 -5.3 murein transglycosylase compare
AO353_15725 -1.1 -3.0 hypothetical protein compare
AO353_12105 -1.1 -4.0 peptidase S41 compare
AO353_10770 -1.1 -4.0 anhydrase compare
AO353_00610 -1.1 -1.2 cytochrome C oxidase Cbb3 compare
AO353_14990 -1.1 -1.8 hypothetical protein compare
AO353_10320 -1.1 -1.4 hypothetical protein compare
AO353_08265 -1.1 -4.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_13160 -1.1 -2.0 membrane protease HflC compare
AO353_01045 -1.1 -2.4 phasin compare
AO353_07895 -1.1 -2.3 fructose-bisphosphate aldolase compare
AO353_27525 -1.1 -1.9 AraC family transcriptional regulator compare
AO353_02040 -1.0 -2.0 integration host factor subunit beta compare
AO353_09150 -1.0 -2.1 cytochrome C2 compare
AO353_25670 -1.0 -3.5 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
AO353_25845 -1.0 -1.9 GNAT family acetyltransferase compare
AO353_04220 -1.0 -3.9 chemotaxis protein CheY compare
AO353_06355 -1.0 -2.8 thiamine-phosphate pyrophosphorylase compare
AO353_13155 -1.0 -3.0 hypothetical protein compare
AO353_13220 -1.0 -3.6 hypothetical protein compare
AO353_13205 -1.0 -3.6 23S rRNA methyltransferase compare
AO353_19290 -1.0 -2.3 molybdenum cofactor sulfurase compare
AO353_02250 -1.0 -2.7 chorismate synthase compare
AO353_08115 -1.0 -4.0 energy transducer TonB compare
AO353_09065 -1.0 -4.3 hypothetical protein compare
AO353_11455 -1.0 -1.9 hypothetical protein compare
AO353_12130 -1.0 -3.7 preprotein translocase subunit SecB compare
AO353_20865 -1.0 -1.8 cold-shock protein compare
AO353_06380 -1.0 -4.2 ATP-binding protein compare
AO353_12085 -1.0 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08555 -1.0 -2.9 hypothetical protein compare
AO353_17290 -1.0 -3.1 multidrug transporter compare
AO353_08470 -1.0 -2.6 RNA pyrophosphohydrolase compare
AO353_08005 -1.0 -2.7 thioesterase compare
AO353_18285 -1.0 -1.4 3-phosphoglycerate kinase compare
AO353_26840 -1.0 -2.3 RND transporter compare
AO353_23165 -0.9 -2.3 cupin compare
AO353_22135 -0.9 -2.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_13925 -0.9 -1.5 XRE family transcriptional regulator compare
AO353_18425 -0.9 -2.7 hypothetical protein compare
AO353_25385 -0.9 -2.2 molybdenum cofactor biosynthesis protein MoaC compare
AO353_12345 -0.9 -1.7 twin-arginine protein translocation system subunit TatC compare
AO353_19310 -0.9 -1.2 enoyl-CoA hydratase compare
AO353_16040 -0.9 -1.9 hypothetical protein compare
AO353_23400 -0.9 -1.6 hypothetical protein compare
AO353_13135 -0.9 -4.9 DNA mismatch repair protein compare
AO353_24415 -0.9 -1.4 glutamine ABC transporter ATP-binding protein compare
AO353_21830 -0.9 -6.8 chemotaxis protein CheY compare
AO353_27460 -0.9 -2.4 hypothetical protein compare
AO353_25315 -0.9 -2.8 malonate decarboxylase subunit epsilon compare
AO353_09260 -0.9 -4.1 ribonuclease PH compare
AO353_15900 -0.9 -1.8 GTP-binding protein compare
AO353_12915 -0.9 -4.0 carbamoyltransferase compare
AO353_24105 -0.9 -4.4 LysR family transcriptional regulator compare
AO353_10440 -0.9 -3.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_27155 -0.9 -0.9 hypothetical protein compare
AO353_03210 -0.9 -1.8 GNAT family acetyltransferase compare
AO353_15410 -0.9 -1.4 hypothetical protein compare
AO353_09885 -0.9 -1.2 transcriptional regulator PhoU compare
AO353_08910 -0.9 -1.8 hypothetical protein compare
AO353_29215 -0.9 -1.7 alpha/beta hydrolase compare
AO353_22695 -0.9 -2.2 LysR family transcriptional regulator compare
AO353_13715 -0.9 -2.2 translation initiation factor Sui1 compare
AO353_27245 -0.9 -2.8 lysozyme compare
AO353_18925 -0.9 -1.9 ATPase compare
AO353_14495 -0.9 -5.1 acetolactate synthase 3 catalytic subunit compare
AO353_12720 -0.8 -2.8 hypothetical protein compare
AO353_09055 -0.8 -3.2 HAD family hydrolase compare
AO353_03840 -0.8 -1.8 ABC transporter ATP-binding protein compare
AO353_15250 -0.8 -1.8 cytochrome B compare
AO353_05135 -0.8 -4.8 toluene tolerance protein compare
AO353_08165 -0.8 -1.9 pyrroline-5-carboxylate reductase compare
AO353_09200 -0.8 -3.1 transcriptional regulator compare
AO353_18305 -0.8 -2.1 RNA helicase compare
AO353_14115 -0.8 -3.7 gamma-glutamyl kinase compare
AO353_13610 -0.8 -2.8 precorrin isomerase compare
AO353_12395 -0.8 -1.8 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_00955 -0.8 -2.3 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_12115 -0.8 -1.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_00750 -0.8 -2.5 GntR family transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Cobalt chloride hexahydrate across organisms