Experiment set1IT085 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; RCH2 media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -6.8 -4.7 3-isopropylmalate dehydratase small subunit compare
EX31_RS15020 -6.1 -15.9 ketol-acid reductoisomerase compare
EX31_RS14185 -5.9 -7.0 acetylglutamate kinase compare
EX31_RS12400 -5.9 -4.0 RNA polymerase factor sigma-54 compare
EX31_RS15005 -5.8 -16.0 dihydroxy-acid dehydratase compare
EX31_RS14190 -5.8 -13.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS04035 -5.8 -10.4 phosphoserine phosphatase compare
EX31_RS12515 -5.7 -24.2 glutamate synthase large subunit compare
EX31_RS03935 -5.7 -7.8 threonine synthase compare
EX31_RS14500 -5.7 -12.1 orotate phosphoribosyltransferase compare
EX31_RS13160 -5.6 -10.1 amino-acid N-acetyltransferase compare
EX31_RS02530 -5.6 -3.9 ABC transporter ATP-binding protein compare
EX31_RS14215 -5.6 -19.9 cystathionine gamma-synthase compare
EX31_RS14180 -5.5 -16.5 argininosuccinate lyase compare
EX31_RS22625 -5.5 -3.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS03835 -5.4 -6.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS16860 -5.4 -19.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03690 -5.3 -9.6 3-isopropylmalate dehydratase large subunit compare
EX31_RS20975 -5.3 -5.2 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS13445 -5.3 -15.4 argininosuccinate synthase compare
EX31_RS12510 -5.3 -19.7 FAD-dependent oxidoreductase compare
EX31_RS21470 -5.2 -8.0 phosphoglycerate dehydrogenase compare
EX31_RS03940 -5.2 -12.2 homoserine kinase compare
EX31_RS03685 -5.2 -14.5 3-isopropylmalate dehydrogenase compare
EX31_RS03830 -5.2 -18.5 carbamoyl-phosphate synthase large subunit compare
EX31_RS14205 -5.1 -14.8 methylenetetrahydrofolate reductase compare
EX31_RS20980 -5.1 -7.0 glutamate 5-kinase compare
EX31_RS11735 -5.1 -9.2 homoserine O-succinyltransferase compare
EX31_RS15880 -5.1 -10.3 nitrogen regulation protein NR(I) compare
EX31_RS03945 -5.0 -24.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS02690 -5.0 -6.0 pyrroline-5-carboxylate reductase compare
EX31_RS20495 -5.0 -8.4 outer membrane protein assembly factor BamB compare
EX31_RS18530 -5.0 -13.7 leucine-responsive transcriptional regulator Lrp compare
EX31_RS05785 -4.9 -4.7 superoxide dismutase [Mn] compare
EX31_RS12825 -4.9 -8.7 ornithine carbamoyltransferase compare
EX31_RS23245 -4.8 -18.0 asparagine synthase B compare
EX31_RS09970 -4.8 -4.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS13275 -4.8 -14.2 diaminopimelate decarboxylase compare
EX31_RS20175 -4.7 -9.6 cysteine synthase A compare
EX31_RS11470 -4.7 -3.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS11465 -4.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS20450 -4.7 -3.2 IMP dehydrogenase compare
EX31_RS12785 -4.7 -15.2 aspartate carbamoyltransferase compare
EX31_RS22695 -4.6 -9.3 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS22620 -4.6 -5.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS02520 -4.6 -4.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03775 -4.6 -4.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS07585 -4.6 -10.6 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS21895 -4.5 -18.8 phosphoribosylformylglycinamidine synthase compare
EX31_RS14200 -4.5 -18.9 phosphoenolpyruvate carboxylase compare
EX31_RS19570 -4.5 -14.3 amidophosphoribosyltransferase compare
EX31_RS03250 -4.5 -11.3 RNA polymerase-binding protein DksA compare
EX31_RS11440 -4.5 -5.4 histidinol dehydrogenase compare
EX31_RS16855 -4.5 -16.9 phosphoribosylamine--glycine ligase compare
EX31_RS09975 -4.5 -6.1 tryptophan synthase subunit beta compare
EX31_RS02515 -4.4 -4.3 PAS domain-containing protein compare
EX31_RS09960 -4.3 -3.0 glutamine amidotransferase compare
EX31_RS24385 -4.3 -3.0 dihydroorotase compare
EX31_RS09855 -4.3 -4.1 orotidine-5'-phosphate decarboxylase compare
EX31_RS09980 -4.2 -6.4 tryptophan synthase subunit alpha compare
EX31_RS23415 -4.2 -8.9 citrate synthase compare
EX31_RS18095 -4.2 -4.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09965 -4.2 -6.3 anthranilate phosphoribosyltransferase compare
EX31_RS11460 -4.1 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS18540 -4.1 -2.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS07870 -4.1 -10.8 adenylyl-sulfate kinase compare
EX31_RS22245 -4.0 -2.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS22750 -4.0 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09955 -3.9 -7.0 anthranilate synthase component 1 compare
EX31_RS20180 -3.9 -4.6 phosphocarrier protein Hpr compare
EX31_RS23490 -3.8 -2.6 cell envelope integrity protein TolA compare
EX31_RS18525 -3.8 -2.6 DNA translocase FtsK compare
EX31_RS11445 -3.8 -7.6 histidinol-phosphate transaminase compare
EX31_RS04630 -3.7 -16.5 aspartate aminotransferase family protein compare
EX31_RS15875 -3.7 -15.4 nitrogen regulation protein NR(II) compare
EX31_RS07895 -3.6 -12.9 phosphoadenylyl-sulfate reductase compare
EX31_RS09890 -3.6 -12.2 HTH-type transcriptional regulator CysB compare
EX31_RS22250 -3.6 -5.9 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS11450 -3.6 -5.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS18255 -3.5 -2.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS03680 -3.5 -13.3 2-isopropylmalate synthase compare
EX31_RS23440 -3.5 -2.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS15870 -3.5 -4.1 glutamate--ammonia ligase compare
EX31_RS14310 -3.4 -5.2 6-phosphofructokinase compare
EX31_RS11455 -3.4 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS07590 -3.4 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS20190 -3.4 -2.3 PTS glucose transporter subunit IIA compare
EX31_RS07955 -3.4 -16.1 GTP diphosphokinase compare
EX31_RS03030 -3.3 -13.1 helix-turn-helix transcriptional regulator compare
EX31_RS07905 -3.3 -17.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS19610 -3.3 -8.6 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS14335 -3.1 -2.2 serine O-acetyltransferase compare
EX31_RS07900 -3.1 -16.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS07595 -3.0 -8.9 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS03035 -3.0 -11.3 LysE family transporter compare
EX31_RS20735 -3.0 -5.6 exodeoxyribonuclease V subunit beta compare
EX31_RS10115 -2.8 -10.4 formyltetrahydrofolate deformylase compare
EX31_RS15010 -2.8 -11.5 threonine ammonia-lyase, biosynthetic compare
EX31_RS01710 -2.7 -2.6 hypothetical protein compare
EX31_RS11815 -2.7 -10.8 glucose-6-phosphate isomerase compare
EX31_RS23500 -2.7 -5.6 peptidoglycan-associated lipoprotein Pal compare
EX31_RS07880 -2.6 -15.4 sulfate adenylyltransferase subunit CysD compare
EX31_RS14550 -2.6 -1.8 Trk system potassium transporter TrkH compare
EX31_RS11675 -2.5 -2.9 Holliday junction branch migration protein RuvA compare
EX31_RS07875 -2.5 -15.7 sulfate adenylyltransferase subunit CysN compare
EX31_RS13045 -2.5 -13.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS22430 -2.4 -2.6 hemolysin expression modulator Hha compare
EX31_RS04105 -2.4 -3.2 helix-turn-helix domain-containing protein compare
EX31_RS06070 -2.4 -10.0 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS14340 -2.4 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS07785 -2.3 -2.2 carbon storage regulator CsrA compare
EX31_RS06055 -2.3 -4.8 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03710 -2.2 -2.1 glucose uptake inhibitor SgrT compare
EX31_RS21850 -2.2 -3.0 pyridoxine 5'-phosphate synthase compare
EX31_RS08535 -2.2 -3.9 30S ribosome-binding factor RbfA compare
EX31_RS23495 -2.1 -7.8 Tol-Pal system protein TolB compare
EX31_RS05145 -2.1 -9.0 inorganic phosphate transporter PitA compare
EX31_RS01485 -2.1 -3.4 helix-turn-helix domain-containing protein compare
EX31_RS08150 -2.0 -12.2 inorganic triphosphatase compare
EX31_RS23485 -2.0 -2.7 colicin uptake protein TolR compare
EX31_RS09550 -2.0 -2.6 flagellar assembly protein FliH compare
EX31_RS08745 -2.0 -2.2 50S ribosomal protein L9 compare
EX31_RS12875 -2.0 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS08720 -2.0 -10.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS19655 -1.9 -5.9 beta-ketoacyl-ACP synthase I compare
EX31_RS01260 -1.9 -1.8 YebG family protein compare
EX31_RS06065 -1.9 -7.5 phosphate ABC transporter permease PstC compare
EX31_RS02525 -1.8 -7.0 ABC transporter permease compare
EX31_RS04925 -1.8 -2.8 Fe-S biogenesis protein NfuA compare
EX31_RS21400 -1.8 -5.6 transketolase compare
EX31_RS23315 -1.8 -5.8 replication initiation negative regulator SeqA compare
EX31_RS22740 -1.8 -8.8 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS20185 -1.8 -6.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS06060 -1.8 -3.9 phosphate ABC transporter permease PstA compare
EX31_RS03400 -1.7 -6.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS19420 -1.7 -2.7 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS03480 -1.7 -4.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS19205 -1.7 -3.5 50S ribosomal protein L25 compare
EX31_RS11335 -1.7 -2.1 flagellar protein FlhE compare
EX31_RS03790 -1.7 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS06680 -1.7 -1.9 cellulose biosynthesis protein BcsF compare
EX31_RS03040 -1.6 -6.7 hypothetical protein compare
EX31_RS09470 -1.6 -3.5 flagella biosynthesis regulatory protein FliT compare
EX31_RS12240 -1.6 -2.5 rod shape-determining protein MreC compare
EX31_RS23480 -1.6 -3.7 Tol-Pal system protein TolQ compare
EX31_RS11525 -1.6 -2.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS21805 -1.6 -2.4 anti-sigma-E factor RseA compare
EX31_RS21020 -1.6 -2.1 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS11435 -1.6 -4.8 ATP phosphoribosyltransferase compare
EX31_RS07830 -1.5 -4.1 murein hydrolase activator NlpD compare
EX31_RS11315 -1.5 -2.4 flagellar basal body rod protein FlgB compare
EX31_RS25375 -1.5 -2.9 ilv operon leader peptide compare
EX31_RS09560 -1.5 -2.8 flagella biosynthesis chaperone FliJ compare
EX31_RS09555 -1.5 -5.7 flagellum-specific ATP synthase FliI compare
EX31_RS11065 -1.5 -3.9 TetR/AcrR family transcriptional regulator compare
EX31_RS25415 -1.5 -1.0 helix-turn-helix domain-containing protein compare
EX31_RS07050 -1.5 -3.1 sugar ABC transporter permease compare
EX31_RS04710 -1.5 -4.1 adenine-specific DNA-methyltransferase compare
EX31_RS14620 -1.5 -2.2 SCP2 domain-containing protein compare
EX31_RS14325 -1.4 -8.7 envelope stress sensor histidine kinase CpxA compare
EX31_RS06985 -1.4 -2.5 iron export ABC transporter permease subunit FetB compare
EX31_RS18305 -1.4 -2.8 tail fiber assembly protein compare
EX31_RS25340 -1.4 -3.9 hypothetical protein compare
EX31_RS09080 -1.4 -1.1 LysR family transcriptional regulator compare
EX31_RS09450 -1.4 -6.3 RNA polymerase sigma factor FliA compare
EX31_RS06405 -1.4 -2.0 SDR family oxidoreductase compare
EX31_RS01760 -1.4 -5.2 hypothetical protein compare
EX31_RS11355 -1.4 -3.0 chemotaxis protein CheY compare
EX31_RS11310 -1.4 -4.6 flagellar basal body rod protein FlgC compare
EX31_RS24480 -1.4 -1.9 purine nucleoside phosphoramidase compare
EX31_RS06150 -1.4 -9.3 transcriptional regulator AsnC compare
EX31_RS07560 -1.3 -10.7 ATP-dependent chaperone ClpB compare
EX31_RS09925 -1.3 -1.5 alpha-ribazole phosphatase compare
EX31_RS18570 -1.3 -1.5 cold shock-like protein CspD compare
EX31_RS09590 -1.3 -2.5 flagellar type III secretion system pore protein FliP compare
EX31_RS16625 -1.3 -1.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS11425 -1.3 -4.5 flagellar transcriptional regulator FlhD compare
EX31_RS14990 -1.3 -8.3 acetolactate synthase 2 catalytic subunit compare
EX31_RS18785 -1.3 -3.8 DUF2384 domain-containing protein compare
EX31_RS00625 -1.3 -1.1 YgdI/YgdR family lipoprotein compare
EX31_RS11690 -1.3 -1.5 dihydroneopterin triphosphate diphosphatase compare
EX31_RS07175 -1.2 -5.4 FAD:protein FMN transferase ApbE compare
EX31_RS09425 -1.2 -2.0 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS06000 -1.2 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS07380 -1.2 -1.6 redox-regulated ATPase YchF compare
EX31_RS25370 -1.2 -7.2 HTH-type transcriptional regulator MetR compare
EX31_RS11340 -1.2 -4.2 flagellar biosynthesis protein FlhA compare
EX31_RS16685 -1.2 -2.1 3-hydroxyacyl-CoA dehydrogenase family protein compare
EX31_RS01985 -1.2 -2.4 type VI secretion system lipoprotein TssJ compare
EX31_RS19395 -1.2 -2.1 NADH-quinone oxidoreductase subunit J compare
EX31_RS09670 -1.2 -1.5 bleomycin resistance protein compare
EX31_RS15000 -1.2 -6.9 branched-chain amino acid transaminase compare
EX31_RS24395 -1.2 -3.0 ribonuclease E compare
EX31_RS15165 -1.2 -4.2 tyrosine recombinase XerC compare
EX31_RS13280 -1.2 -7.3 LysR family transcriptional regulator compare
EX31_RS09545 -1.2 -2.2 flagellar motor switch protein FliG compare
EX31_RS11125 -1.2 -2.2 ABC transporter ATP-binding protein compare
EX31_RS03330 -1.1 -2.2 hypoxanthine phosphoribosyltransferase compare
EX31_RS01620 -1.1 -1.9 DUF2190 family protein compare
EX31_RS07685 -1.1 -2.2 phage tail assembly protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Ammonium chloride in Rahnella sp. WP5

For nitrogen source Ammonium chloride across organisms