Experiment set1IT084 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cobalt chloride hexahydrate 0.16 mM

200 most important genes:

  gene name fitness t score description  
AO353_26685 -4.1 -8.3 cobalt efflux pump (from data) conserved
AO353_18540 -3.4 -4.0 pseudouridine synthase compare
AO353_14220 -3.2 -3.1 ribosomal large subunit pseudouridine synthase D compare
AO353_12420 -3.2 -3.8 predicted FeS cluster maintenance protein (from data) compare
AO353_05625 -3.0 -2.9 transcription elongation factor GreA compare
AO353_07355 -2.9 -6.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03595 -2.9 -5.0 hypothetical protein compare
AO353_10445 -2.8 -2.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_05690 -2.7 -4.8 SsrA-binding protein compare
AO353_20185 -2.6 -8.5 DNA-binding protein compare
AO353_00825 -2.4 -5.1 porin compare
AO353_10455 -2.4 -2.8 tRNA modification GTPase MnmE compare
AO353_14485 -2.4 -2.1 pseudouridine synthase compare
AO353_11730 -2.3 -10.9 glutamate--cysteine ligase compare
AO353_04565 -2.2 -7.1 nucleoid-associated protein compare
AO353_06040 -2.2 -4.9 exodeoxyribonuclease V subunit alpha compare
AO353_13100 -2.2 -2.6 GTPase RsgA compare
AO353_02640 -2.2 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_11770 -2.2 -2.5 molecular chaperone Hsp33 compare
AO353_10780 -2.2 -2.3 DNA-binding protein compare
AO353_17970 -2.1 -14.1 hypothetical protein compare
AO353_13225 -2.1 -3.3 50S ribosomal protein L9 compare
AO353_12500 -2.1 -2.4 shikimate kinase compare
AO353_14585 -2.1 -6.3 ribosomal-protein-alanine acetyltransferase compare
AO353_08880 -2.1 -3.4 exopolyphosphatase compare
AO353_06045 -2.1 -8.5 exodeoxyribonuclease V subunit beta compare
AO353_04185 -2.0 -5.8 DeoR family transcriptional regulator compare
AO353_14150 -2.0 -2.7 peptidylprolyl isomerase compare
AO353_03590 -2.0 -4.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_02810 -2.0 -7.8 histidine kinase compare
AO353_09720 -2.0 -1.8 hypothetical protein compare
AO353_07075 -1.9 -5.5 elongation factor Tu compare
AO353_05550 -1.9 -6.3 pseudouridine synthase compare
AO353_02250 -1.9 -3.3 chorismate synthase compare
AO353_04355 -1.9 -2.8 homoserine dehydrogenase compare
AO353_21455 -1.8 -2.5 cation:proton antiporter compare
AO353_13220 -1.8 -6.3 hypothetical protein compare
AO353_27710 -1.8 -2.4 DNA repair protein compare
AO353_24745 -1.8 -2.8 hypothetical protein compare
AO353_15785 -1.8 -8.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_27720 -1.7 -4.5 cupin compare
AO353_02005 -1.7 -2.4 hypothetical protein compare
AO353_14400 -1.7 -5.2 Fis family transcriptional regulator compare
AO353_19145 -1.7 -4.5 protease HtpX compare
AO353_06495 -1.6 -5.1 gamma-glutamyl phosphate reductase compare
AO353_12115 -1.6 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03515 -1.6 -2.3 cold-shock protein compare
AO353_13140 -1.5 -6.0 tRNA dimethylallyltransferase compare
AO353_20175 -1.5 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_13925 -1.5 -2.8 XRE family transcriptional regulator compare
AO353_14775 -1.5 -6.2 hypothetical protein compare
AO353_09000 -1.5 -5.5 argininosuccinate lyase compare
AO353_13200 -1.5 -9.3 exoribonuclease R compare
AO353_06725 -1.5 -2.4 hypothetical protein compare
AO353_13155 -1.5 -4.2 hypothetical protein compare
AO353_05465 -1.5 -9.9 flavodoxin compare
AO353_06050 -1.5 -6.4 exodeoxyribonuclease V subunit gamma compare
AO353_01355 -1.4 -6.3 3-oxoacyl-ACP synthase compare
AO353_03580 -1.4 -3.5 ATP-dependent DNA helicase RuvB compare
AO353_03710 -1.4 -2.8 formyltetrahydrofolate deformylase compare
AO353_29005 -1.4 -2.9 hypothetical protein compare
AO353_16425 -1.4 -2.5 Fe-S metabolism protein SufE compare
AO353_11915 -1.4 -5.4 agmatine deiminase compare
AO353_27000 -1.4 -1.7 hypothetical protein compare
AO353_03615 -1.4 -3.6 cold-shock protein compare
AO353_20810 -1.4 -2.5 hypothetical protein compare
AO353_18305 -1.3 -3.5 RNA helicase compare
AO353_23495 -1.3 -2.7 SAM-dependent methyltransferase compare
AO353_14740 -1.3 -3.8 GTP-binding protein compare
AO353_15460 -1.3 -5.6 cytochrome o ubiquinol oxidase subunit III compare
AO353_01405 -1.3 -6.2 23S rRNA pseudouridylate synthase compare
AO353_21625 -1.3 -1.7 Fe/S biogenesis protein NfuA compare
AO353_13715 -1.3 -2.3 translation initiation factor Sui1 compare
AO353_08420 -1.3 -8.2 ATPase P conserved
AO353_15455 -1.3 -9.2 cytochrome o ubiquinol oxidase subunit I compare
AO353_12105 -1.3 -5.2 peptidase S41 compare
AO353_11165 -1.3 -6.7 hypothetical protein compare
AO353_13160 -1.3 -2.5 membrane protease HflC compare
AO353_04175 -1.2 -4.0 glycerol uptake facilitator GlpF compare
AO353_08115 -1.2 -5.1 energy transducer TonB compare
AO353_03585 -1.2 -2.3 ATP-dependent DNA helicase RuvA compare
AO353_04340 -1.2 -2.7 hypothetical protein compare
AO353_08110 -1.2 -4.8 glutathione synthetase compare
AO353_16940 -1.2 -5.0 deoxycytidine triphosphate deaminase compare
AO353_00460 -1.2 -2.0 TetR family transcriptional regulator compare
AO353_09285 -1.2 -7.1 reactive intermediate/imine deaminase compare
AO353_03715 -1.2 -2.3 H-NS histone compare
AO353_02600 -1.2 -2.6 alpha-ribazole phosphatase compare
AO353_14395 -1.2 -3.4 poly(A) polymerase compare
AO353_08195 -1.2 -3.5 non-canonical purine NTP pyrophosphatase compare
AO353_12650 -1.2 -1.2 hypothetical protein compare
AO353_03815 -1.2 -1.1 heme utilization protein compare
AO353_10940 -1.1 -3.4 cytochrome compare
AO353_07315 -1.1 -2.0 rRNA methyltransferase compare
AO353_03015 -1.1 -3.4 arginine N-succinyltransferase compare
AO353_16345 -1.1 -2.7 energy transducer TonB compare
AO353_22580 -1.1 -3.0 3-demethylubiquinone-9 3-methyltransferase compare
AO353_08425 -1.1 -4.4 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO353_00650 -1.1 -2.4 cytochrome biogenesis protein compare
AO353_14420 -1.1 -3.0 molecular chaperone DnaK compare
AO353_15470 -1.1 -7.3 protoheme IX farnesyltransferase compare
AO353_26945 -1.1 -1.9 transcriptional regulator compare
AO353_24260 -1.1 -1.2 hypothetical protein compare
AO353_03100 -1.1 -1.9 XRE family transcriptional regulator compare
AO353_04520 -1.1 -3.3 elongation factor 4 compare
AO353_19625 -1.1 -3.3 isopentenyl-diphosphate delta-isomerase compare
AO353_06355 -1.1 -3.1 thiamine-phosphate pyrophosphorylase compare
AO353_27365 -1.1 -1.7 hypothetical protein compare
AO353_20565 -1.1 -1.2 tRNA-Ala compare
AO353_18780 -1.1 -5.0 cobyrinic acid a,c-diamide synthase compare
AO353_12130 -1.1 -3.4 preprotein translocase subunit SecB compare
AO353_10510 -1.1 -1.7 benzoate transporter compare
AO353_03275 -1.1 -1.6 LysR family transcriptional regulator compare
AO353_02885 -1.0 -1.8 flagellar biosynthesis protein FlgN compare
AO353_12345 -1.0 -1.7 twin-arginine protein translocation system subunit TatC compare
AO353_05145 -1.0 -4.0 ABC transporter permease compare
AO353_19250 -1.0 -1.8 molybdenum cofactor guanylyltransferase compare
AO353_19360 -1.0 -2.4 peroxiredoxin compare
AO353_15290 -1.0 -5.0 methyltransferase compare
AO353_09260 -1.0 -4.5 ribonuclease PH compare
AO353_11035 -1.0 -3.9 hypothetical protein compare
AO353_07325 -1.0 -1.6 diadenosine tetraphosphatase compare
AO353_02040 -0.9 -1.8 integration host factor subunit beta compare
AO353_06380 -0.9 -3.9 ATP-binding protein compare
AO353_12935 -0.9 -2.6 glycosyltransferase compare
AO353_23730 -0.9 -2.2 hypothetical protein compare
AO353_09240 -0.9 -2.5 acetylglutamate kinase compare
AO353_08350 -0.9 -4.0 hypothetical protein compare
AO353_25745 -0.9 -1.9 LysR family transcriptional regulator compare
AO353_22870 -0.9 -1.5 oxidoreductase compare
AO353_09885 -0.9 -1.1 transcriptional regulator PhoU compare
AO353_01975 -0.9 -4.8 glycosyl transferase compare
AO353_20425 -0.9 -1.7 ArsC family transcriptional regulator compare
AO353_24130 -0.9 -1.8 hypothetical protein compare
AO353_15905 -0.9 -4.5 outer membrane protein assembly factor BamB compare
AO353_06850 -0.9 -2.3 MFS transporter compare
AO353_04365 -0.9 -3.2 recombinase XerD compare
AO353_28725 -0.9 -2.7 hypothetical protein compare
AO353_02220 -0.9 -1.1 hypothetical protein compare
AO353_07645 -0.9 -1.3 sarcosine oxidase subunit gamma compare
AO353_02520 -0.9 -1.6 sodium transporter compare
AO353_20835 -0.9 -3.2 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_08165 -0.9 -2.1 pyrroline-5-carboxylate reductase compare
AO353_03020 -0.9 -4.2 arginine N-succinyltransferase compare
AO353_08510 -0.8 -3.3 3-phosphoglycerate dehydrogenase compare
AO353_21935 -0.8 -1.7 nitrite reductase compare
AO353_27950 -0.8 -1.8 hypothetical protein compare
AO353_24335 -0.8 -2.4 L-asparagine permease compare
AO353_02300 -0.8 -1.4 MarR family transcriptional regulator compare
AO353_10950 -0.8 -5.1 thiol:disulfide interchange protein compare
AO353_21595 -0.8 -4.3 serine/threonine protein kinase compare
AO353_17290 -0.8 -3.1 multidrug transporter compare
AO353_12915 -0.8 -4.1 carbamoyltransferase compare
AO353_21615 -0.8 -5.4 methionine synthase compare
AO353_17885 -0.8 -0.9 hypothetical protein compare
AO353_26680 -0.8 -2.9 hypothetical protein compare
AO353_28425 -0.8 -2.4 TetR family transcriptional regulator compare
AO353_00330 -0.8 -4.6 hypothetical protein compare
AO353_08365 -0.8 -3.3 L-cystine transporter tcyP compare
AO353_08200 -0.8 -4.8 coproporphyrinogen III oxidase compare
AO353_09250 -0.8 -1.7 exodeoxyribonuclease III compare
AO353_22700 -0.8 -1.3 LexA family transcriptional regulator compare
AO353_18505 -0.8 -1.2 translation initiation factor 2 compare
AO353_08765 -0.8 -3.2 hypothetical protein compare
AO353_06265 -0.8 -4.1 DEAD/DEAH box helicase compare
AO353_02010 -0.8 -3.5 glycosyl transferase family 1 compare
AO353_22600 -0.8 -1.7 hypothetical protein compare
AO353_01990 -0.8 -3.4 UDP-N-acetylglucosamine 2-epimerase compare
AO353_02000 -0.8 -2.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_14940 -0.8 -2.1 malate:quinone oxidoreductase compare
AO353_21640 -0.8 -1.2 cobalt transporter compare
AO353_07595 -0.8 -1.8 transcriptional regulator compare
AO353_15250 -0.8 -2.2 cytochrome B compare
AO353_16805 -0.8 -3.2 recombinase RecA compare
AO353_06490 -0.8 -1.9 nicotinate-nucleotide adenylyltransferase compare
AO353_09320 -0.8 -4.1 ATP-dependent DNA helicase RecG compare
AO353_27650 -0.8 -1.6 cell division protein FtsK compare
AO353_23955 -0.8 -2.4 RND transporter compare
AO353_20200 -0.8 -2.5 peptidylprolyl isomerase compare
AO353_18225 -0.8 -4.1 ATP-dependent RNA helicase HrpA compare
AO353_18745 -0.8 -1.3 flagellar biosynthesis protein flip compare
AO353_13150 -0.7 -4.0 GTPase HflX compare
AO353_09030 -0.7 -1.0 iron donor protein CyaY compare
AO353_02735 -0.7 -5.9 chemotaxis protein CheY compare
AO353_04180 -0.7 -4.1 glycerol kinase compare
AO353_26520 -0.7 -2.1 TetR family transcriptional regulator compare
AO353_20660 -0.7 -2.1 pseudouridine synthase compare
AO353_24190 -0.7 -2.2 hypothetical protein compare
AO353_09010 -0.7 -1.8 hypothetical protein compare
AO353_09905 -0.7 -4.2 phosphate-binding protein compare
AO353_00505 -0.7 -2.3 3-ketoacyl-CoA thiolase compare
AO353_19310 -0.7 -1.1 enoyl-CoA hydratase compare
AO353_16430 -0.7 -3.6 cysteine sulfinate desulfinase compare
AO353_00430 -0.7 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_18285 -0.7 -2.2 3-phosphoglycerate kinase compare
AO353_09900 -0.7 -4.3 phosphate ABC transporter permease compare
AO353_14115 -0.7 -3.0 gamma-glutamyl kinase compare
AO353_02710 -0.7 -4.8 (p)ppGpp synthetase compare
AO353_02550 -0.7 -1.7 TetR family transcriptional regulator compare
AO353_05725 -0.7 -3.1 tmRNA compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Cobalt chloride hexahydrate across organisms