Experiment set1IT084 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; RCH2 media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS12510 -6.8 -12.2 FAD-dependent oxidoreductase compare
EX31_RS15005 -6.3 -12.8 dihydroxy-acid dehydratase compare
EX31_RS14190 -6.3 -10.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03685 -6.1 -8.3 3-isopropylmalate dehydrogenase compare
EX31_RS04035 -6.0 -5.9 phosphoserine phosphatase compare
EX31_RS12515 -5.9 -19.1 glutamate synthase large subunit compare
EX31_RS03695 -5.9 -5.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS14180 -5.9 -11.4 argininosuccinate lyase compare
EX31_RS15020 -5.9 -16.9 ketol-acid reductoisomerase compare
EX31_RS12785 -5.8 -9.8 aspartate carbamoyltransferase compare
EX31_RS14500 -5.8 -10.4 orotate phosphoribosyltransferase compare
EX31_RS14185 -5.8 -6.9 acetylglutamate kinase compare
EX31_RS03690 -5.7 -5.6 3-isopropylmalate dehydratase large subunit compare
EX31_RS13160 -5.7 -10.2 amino-acid N-acetyltransferase compare
EX31_RS03940 -5.6 -9.4 homoserine kinase compare
EX31_RS03935 -5.6 -7.7 threonine synthase compare
EX31_RS12400 -5.6 -5.4 RNA polymerase factor sigma-54 compare
EX31_RS02690 -5.5 -3.8 pyrroline-5-carboxylate reductase compare
EX31_RS22625 -5.5 -3.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS14215 -5.4 -20.6 cystathionine gamma-synthase compare
EX31_RS20980 -5.4 -6.5 glutamate 5-kinase compare
EX31_RS16860 -5.4 -18.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS13445 -5.4 -14.7 argininosuccinate synthase compare
EX31_RS03830 -5.4 -15.8 carbamoyl-phosphate synthase large subunit compare
EX31_RS12825 -5.3 -8.1 ornithine carbamoyltransferase compare
EX31_RS14200 -5.3 -17.8 phosphoenolpyruvate carboxylase compare
EX31_RS20975 -5.3 -5.1 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS13275 -5.3 -12.7 diaminopimelate decarboxylase compare
EX31_RS03945 -5.2 -23.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS21895 -5.1 -15.8 phosphoribosylformylglycinamidine synthase compare
EX31_RS20495 -5.0 -7.7 outer membrane protein assembly factor BamB compare
EX31_RS23245 -5.0 -15.5 asparagine synthase B compare
EX31_RS16855 -5.0 -16.4 phosphoribosylamine--glycine ligase compare
EX31_RS07870 -5.0 -10.2 adenylyl-sulfate kinase compare
EX31_RS18530 -5.0 -12.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS09965 -5.0 -3.4 anthranilate phosphoribosyltransferase compare
EX31_RS07585 -5.0 -8.9 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS02530 -4.9 -5.9 ABC transporter ATP-binding protein compare
EX31_RS03775 -4.9 -3.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS09855 -4.9 -3.4 orotidine-5'-phosphate decarboxylase compare
EX31_RS21470 -4.9 -9.4 phosphoglycerate dehydrogenase compare
EX31_RS15880 -4.9 -10.4 nitrogen regulation protein NR(I) compare
EX31_RS11460 -4.8 -3.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS03250 -4.8 -10.2 RNA polymerase-binding protein DksA compare
EX31_RS02520 -4.7 -4.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS05785 -4.7 -4.6 superoxide dismutase [Mn] compare
EX31_RS23415 -4.7 -7.2 citrate synthase compare
EX31_RS03835 -4.7 -9.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS11440 -4.7 -4.6 histidinol dehydrogenase compare
EX31_RS22695 -4.7 -10.0 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS09975 -4.6 -5.5 tryptophan synthase subunit beta compare
EX31_RS11735 -4.6 -10.7 homoserine O-succinyltransferase compare
EX31_RS07895 -4.6 -11.4 phosphoadenylyl-sulfate reductase compare
EX31_RS09980 -4.5 -5.4 tryptophan synthase subunit alpha compare
EX31_RS19570 -4.5 -13.8 amidophosphoribosyltransferase compare
EX31_RS11465 -4.5 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS09960 -4.4 -3.1 glutamine amidotransferase compare
EX31_RS20450 -4.4 -5.2 IMP dehydrogenase compare
EX31_RS23500 -4.3 -5.1 peptidoglycan-associated lipoprotein Pal compare
EX31_RS09970 -4.3 -8.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS11450 -4.2 -4.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS11455 -4.2 -5.0 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS11470 -4.2 -4.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS02515 -4.2 -5.7 PAS domain-containing protein compare
EX31_RS20175 -4.2 -10.4 cysteine synthase A compare
EX31_RS09955 -4.1 -6.3 anthranilate synthase component 1 compare
EX31_RS18540 -4.1 -2.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS18095 -4.1 -4.9 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS24385 -4.1 -4.0 dihydroorotase compare
EX31_RS14205 -4.0 -14.1 methylenetetrahydrofolate reductase compare
EX31_RS11445 -4.0 -7.7 histidinol-phosphate transaminase compare
EX31_RS22245 -4.0 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS22750 -4.0 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09890 -3.9 -12.7 HTH-type transcriptional regulator CysB compare
EX31_RS22620 -3.9 -6.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS03035 -3.9 -11.0 LysE family transporter compare
EX31_RS18525 -3.8 -2.6 DNA translocase FtsK compare
EX31_RS15875 -3.7 -16.1 nitrogen regulation protein NR(II) compare
EX31_RS19610 -3.6 -8.1 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS18255 -3.6 -2.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS14310 -3.6 -4.9 6-phosphofructokinase compare
EX31_RS23440 -3.5 -2.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS10115 -3.5 -11.6 formyltetrahydrofolate deformylase compare
EX31_RS22250 -3.5 -6.3 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS07955 -3.5 -18.3 GTP diphosphokinase compare
EX31_RS07905 -3.5 -18.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS15155 -3.5 -3.3 diaminopimelate epimerase compare
EX31_RS07900 -3.4 -18.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS04630 -3.4 -16.2 aspartate aminotransferase family protein compare
EX31_RS03680 -3.4 -13.7 2-isopropylmalate synthase compare
EX31_RS07590 -3.3 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS15870 -3.3 -4.5 glutamate--ammonia ligase compare
EX31_RS07785 -3.2 -2.2 carbon storage regulator CsrA compare
EX31_RS14340 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS14335 -3.1 -2.1 serine O-acetyltransferase compare
EX31_RS21850 -3.1 -2.9 pyridoxine 5'-phosphate synthase compare
EX31_RS22430 -3.0 -2.9 hemolysin expression modulator Hha compare
EX31_RS08535 -3.0 -4.0 30S ribosome-binding factor RbfA compare
EX31_RS07880 -2.9 -16.9 sulfate adenylyltransferase subunit CysD compare
EX31_RS20735 -2.9 -5.4 exodeoxyribonuclease V subunit beta compare
EX31_RS03030 -2.8 -11.9 helix-turn-helix transcriptional regulator compare
EX31_RS08720 -2.8 -13.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS11675 -2.7 -3.2 Holliday junction branch migration protein RuvA compare
EX31_RS19655 -2.7 -6.8 beta-ketoacyl-ACP synthase I compare
EX31_RS15010 -2.7 -11.4 threonine ammonia-lyase, biosynthetic compare
EX31_RS23495 -2.6 -8.8 Tol-Pal system protein TolB compare
EX31_RS23490 -2.6 -3.9 cell envelope integrity protein TolA compare
EX31_RS06055 -2.6 -4.6 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03480 -2.5 -3.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS07875 -2.5 -15.2 sulfate adenylyltransferase subunit CysN compare
EX31_RS07595 -2.4 -8.2 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS07380 -2.4 -2.8 redox-regulated ATPase YchF compare
EX31_RS06070 -2.3 -9.2 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS25365 -2.3 -2.2 50S ribosomal protein L31 compare
EX31_RS14620 -2.3 -3.1 SCP2 domain-containing protein compare
EX31_RS04390 -2.3 -3.5 DNA polymerase III subunit chi compare
EX31_RS11815 -2.3 -10.0 glucose-6-phosphate isomerase compare
EX31_RS23485 -2.2 -2.6 colicin uptake protein TolR compare
EX31_RS13045 -2.1 -12.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS12875 -2.1 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS19795 -2.1 -2.0 hypothetical protein compare
EX31_RS04105 -2.1 -2.8 helix-turn-helix domain-containing protein compare
EX31_RS11435 -2.1 -5.4 ATP phosphoribosyltransferase compare
EX31_RS21400 -2.0 -5.9 transketolase compare
EX31_RS20190 -2.0 -1.8 PTS glucose transporter subunit IIA compare
EX31_RS20180 -2.0 -2.3 phosphocarrier protein Hpr compare
EX31_RS02525 -2.0 -8.0 ABC transporter permease compare
EX31_RS01850 -2.0 -3.2 type VI secretion system contractile sheath small subunit compare
EX31_RS25370 -1.9 -10.3 HTH-type transcriptional regulator MetR compare
EX31_RS08745 -1.9 -1.8 50S ribosomal protein L9 compare
EX31_RS03040 -1.9 -7.8 hypothetical protein compare
EX31_RS05145 -1.8 -8.2 inorganic phosphate transporter PitA compare
EX31_RS19205 -1.8 -3.0 50S ribosomal protein L25 compare
EX31_RS06065 -1.8 -7.1 phosphate ABC transporter permease PstC compare
EX31_RS11540 -1.8 -4.7 dCTP deaminase compare
EX31_RS06060 -1.6 -4.1 phosphate ABC transporter permease PstA compare
EX31_RS09545 -1.6 -2.6 flagellar motor switch protein FliG compare
EX31_RS22740 -1.6 -6.9 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS08150 -1.6 -10.0 inorganic triphosphatase compare
EX31_RS21805 -1.6 -2.6 anti-sigma-E factor RseA compare
EX31_RS19600 -1.5 -6.3 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS14325 -1.5 -8.6 envelope stress sensor histidine kinase CpxA compare
EX31_RS11525 -1.5 -2.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS01840 -1.5 -2.9 PAS domain-containing protein compare
EX31_RS06150 -1.5 -10.4 transcriptional regulator AsnC compare
EX31_RS01485 -1.5 -2.8 helix-turn-helix domain-containing protein compare
EX31_RS09450 -1.5 -7.5 RNA polymerase sigma factor FliA compare
EX31_RS23315 -1.4 -5.2 replication initiation negative regulator SeqA compare
EX31_RS19480 -1.4 -5.1 acetate kinase compare
EX31_RS09555 -1.4 -5.5 flagellum-specific ATP synthase FliI compare
EX31_RS11285 -1.4 -4.2 flagellar basal body L-ring protein FlgH compare
EX31_RS20185 -1.4 -5.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS09560 -1.4 -2.1 flagella biosynthesis chaperone FliJ compare
EX31_RS23480 -1.4 -3.0 Tol-Pal system protein TolQ compare
EX31_RS09565 -1.4 -1.6 flagellar hook-length control protein FliK compare
EX31_RS08130 -1.4 -2.0 accessory factor UbiK family protein compare
EX31_RS24380 -1.4 -2.0 DNA damage-inducible protein I compare
EX31_RS19700 -1.4 -3.3 phosphohistidine phosphatase SixA compare
EX31_RS20530 -1.4 -5.5 nucleoside-diphosphate kinase compare
EX31_RS13280 -1.4 -7.7 LysR family transcriptional regulator compare
EX31_RS11425 -1.3 -4.8 flagellar transcriptional regulator FlhD compare
EX31_RS07560 -1.3 -10.9 ATP-dependent chaperone ClpB compare
EX31_RS24765 -1.3 -3.0 non-heme ferritin compare
EX31_RS08520 -1.3 -7.6 polyribonucleotide nucleotidyltransferase compare
EX31_RS14345 -1.3 -2.6 protein-export chaperone SecB compare
EX31_RS08825 -1.3 -8.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS03790 -1.3 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS05855 -1.3 -2.0 glycine--tRNA ligase subunit beta compare
EX31_RS00985 -1.3 -2.2 type VI secretion protein compare
EX31_RS01760 -1.3 -4.5 hypothetical protein compare
EX31_RS09290 -1.3 -1.7 hypothetical protein compare
EX31_RS16845 -1.3 -3.6 DNA-binding protein HU-alpha compare
EX31_RS06140 -1.3 -7.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS07830 -1.2 -3.8 murein hydrolase activator NlpD compare
EX31_RS06000 -1.2 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS11110 -1.2 -1.3 RidA family protein compare
EX31_RS01225 -1.2 -2.3 glutaredoxin-dependent arsenate reductase compare
EX31_RS01265 -1.2 -2.6 GNAT family N-acetyltransferase compare
EX31_RS17640 -1.2 -1.8 TetR/AcrR family transcriptional regulator compare
EX31_RS07120 -1.2 -2.5 LysR family transcriptional regulator compare
EX31_RS06405 -1.2 -1.7 SDR family oxidoreductase compare
EX31_RS26025 -1.2 -1.5 conjugal transfer protein TraK compare
EX31_RS11335 -1.2 -1.7 flagellar protein FlhE compare
EX31_RS01650 -1.2 -2.2 hypothetical protein compare
EX31_RS03400 -1.2 -4.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS11355 -1.2 -2.8 chemotaxis protein CheY compare
EX31_RS04775 -1.2 -4.4 Hsp33 family molecular chaperone HslO compare
EX31_RS11410 -1.2 -4.7 flagellar motor protein MotB compare
EX31_RS13740 -1.2 -2.0 glutathione transferase GstA compare
EX31_RS18090 -1.2 -2.4 cell division protein ZapC compare
EX31_RS24770 -1.2 -2.3 copper homeostasis periplasmic binding protein CopC compare
EX31_RS12500 -1.2 -7.4 stringent starvation protein A compare
EX31_RS14220 -1.2 -2.1 met regulon transcriptional regulator MetJ compare
EX31_RS09465 -1.1 -3.2 flagellar export chaperone FliS compare
EX31_RS14320 -1.1 -1.8 envelope stress response regulator transcription factor CpxR compare
EX31_RS11300 -1.1 -5.1 flagellar hook protein FlgE compare
EX31_RS01090 -1.1 -1.9 metal ABC transporter permease compare
EX31_RS23470 -1.1 -1.8 cyd operon protein YbgE compare
EX31_RS12175 -1.1 -3.2 DNA-binding transcriptional regulator Fis compare
EX31_RS25140 -1.1 -1.2 AlpA family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Ammonium chloride in Rahnella sp. WP5

For nitrogen source Ammonium chloride across organisms