Experiment set1IT084 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; RCH2 media; no shaking

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS07340 +2.3 3.6 stress-induced protein YchH compare
EX31_RS13335 +1.6 3.8 transcriptional regulator compare
EX31_RS07475 +1.6 2.6 hypothetical protein compare
EX31_RS07470 +1.5 3.6 hypothetical protein compare
EX31_RS11845 +1.2 1.8 repressor LexA compare
EX31_RS06915 +1.2 1.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS07135 +1.1 2.1 hypothetical protein compare
EX31_RS10375 +1.1 3.1 hypothetical protein compare
EX31_RS20935 +1.1 2.1 hypothetical protein compare
EX31_RS14435 +1.0 5.8 glycosyltransferase family 4 protein compare
EX31_RS01805 +1.0 1.6 hypothetical protein compare
EX31_RS07410 +1.0 2.5 NAD(P)H-dependent oxidoreductase compare
EX31_RS18450 +0.9 1.7 hypothetical protein compare
EX31_RS01390 +0.9 1.6 hypothetical protein compare
EX31_RS07430 +0.9 2.4 transporter substrate-binding domain-containing protein compare
EX31_RS21145 +0.9 2.7 oxalurate catabolism protein HpxZ compare
EX31_RS06955 +0.9 2.5 hypothetical protein compare
EX31_RS15525 +0.8 2.5 nitrogen assimilation transcriptional regulator compare
EX31_RS02365 +0.8 1.5 hypothetical protein compare
EX31_RS26065 +0.8 1.9 IS630 family transposase compare
EX31_RS07015 +0.8 1.9 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS10955 +0.8 1.9 AI-2E family transporter compare
EX31_RS01920 +0.8 2.0 hypothetical protein compare
EX31_RS09375 +0.7 2.3 gamma-glutamylcyclotransferase compare
EX31_RS07130 +0.7 1.8 ABC transporter substrate-binding protein compare
EX31_RS11395 +0.7 3.2 transcriptional regulator FtrA compare
EX31_RS06800 +0.7 1.7 ABC transporter permease compare
EX31_RS11160 +0.7 3.2 hypothetical protein compare
EX31_RS10520 +0.7 2.5 hypothetical protein compare
EX31_RS24655 +0.7 1.6 hypothetical protein compare
EX31_RS08200 +0.7 3.3 hypothetical protein compare
EX31_RS00610 +0.7 2.4 heme utilization cystosolic carrier protein HutX compare
EX31_RS02500 +0.7 2.5 LLM class flavin-dependent oxidoreductase compare
EX31_RS12535 +0.7 3.6 DnaA initiator-associating protein DiaA compare
EX31_RS22270 +0.7 1.2 competence protein ComEA compare
EX31_RS07095 +0.7 1.4 DUF1283 family protein compare
EX31_RS24945 +0.7 2.0 5S ribosomal RNA compare
EX31_RS24310 +0.7 2.3 hypothetical protein compare
EX31_RS09305 +0.7 2.1 respiratory nitrate reductase subunit gamma compare
EX31_RS10590 +0.7 1.4 cell division topological specificity factor MinE compare
EX31_RS25725 +0.7 1.0 hypothetical protein compare
EX31_RS06945 +0.6 1.5 helix-turn-helix domain-containing protein compare
EX31_RS05245 +0.6 1.7 PTS sugar transporter subunit IIB compare
EX31_RS21575 +0.6 2.0 hypothetical protein compare
EX31_RS01780 +0.6 2.0 hypothetical protein compare
EX31_RS07545 +0.6 2.5 SDR family oxidoreductase compare
EX31_RS02390 +0.6 1.3 steroid Delta-isomerase compare
EX31_RS11650 +0.6 2.2 glucose 1-dehydrogenase compare
EX31_RS10750 +0.6 1.8 chromate transporter compare
EX31_RS02270 +0.6 1.9 transcriptional regulator ChbR compare
EX31_RS06980 +0.6 1.9 iron ABC transporter ATP-binding protein FetA compare
EX31_RS11625 +0.6 1.0 hypothetical protein compare
EX31_RS20315 +0.6 2.6 two-component system response regulator BaeR compare
EX31_RS00545 +0.6 1.5 molybdopterin-dependent oxidoreductase compare
EX31_RS06565 +0.6 1.7 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS14635 +0.6 2.4 DedA family protein compare
EX31_RS00675 +0.6 2.3 membrane dipeptidase compare
EX31_RS01965 +0.6 1.7 DUF2931 family protein compare
EX31_RS09655 +0.6 0.9 membrane protein compare
EX31_RS18420 +0.6 2.3 hypothetical protein compare
EX31_RS16355 +0.6 1.4 hypothetical protein compare
EX31_RS10755 +0.6 2.3 glycoside hydrolase family 3 protein compare
EX31_RS02360 +0.6 1.6 CsbD family protein compare
EX31_RS03395 +0.6 1.8 YacL family protein compare
EX31_RS10825 +0.6 1.0 hypothetical protein compare
EX31_RS10895 +0.5 2.6 acyl-CoA transferase compare
EX31_RS16545 +0.5 1.9 PTS lactose/cellobiose transporter subunit IIA compare
EX31_RS19505 +0.5 1.2 PTS sugar transporter subunit IIB compare
EX31_RS10805 +0.5 3.0 efflux transporter outer membrane subunit compare
EX31_RS12660 +0.5 3.1 DedA family protein compare
EX31_RS24685 +0.5 1.2 DUF986 domain-containing protein compare
EX31_RS10170 +0.5 2.6 gallate dioxygenase compare
EX31_RS09260 +0.5 2.3 ABC transporter ATP-binding protein compare
EX31_RS01595 +0.5 0.7 phage minor tail protein G compare
EX31_RS14445 +0.5 2.9 glycosyltransferase family 2 protein compare
EX31_RS25300 +0.5 0.9 YqaE/Pmp3 family membrane protein compare
EX31_RS18495 +0.5 2.6 dimethylsulfoxide reductase subunit B compare
EX31_RS09075 +0.5 1.2 type 1 fimbrial protein compare
EX31_RS01270 +0.5 1.7 LysR family transcriptional regulator compare
EX31_RS23880 +0.5 1.0 DUF1471 domain-containing protein compare
EX31_RS10745 +0.5 2.2 chromate transporter compare
EX31_RS20890 +0.5 1.1 hypothetical protein compare
EX31_RS01785 +0.5 1.5 YfdQ family protein compare
EX31_RS22980 +0.5 2.1 sugar O-acetyltransferase compare
EX31_RS20930 +0.5 1.4 hypothetical protein compare
EX31_RS14415 +0.5 2.8 sugar glycosyltransferase compare
EX31_RS16000 +0.5 1.5 alternative ribosome-rescue factor A compare
EX31_RS06690 +0.5 1.5 hypothetical protein compare
EX31_RS01510 +0.5 1.3 DinI-like family protein compare
EX31_RS07010 +0.5 1.4 ABC transporter ATP-binding protein compare
EX31_RS07170 +0.5 3.2 glycogen debranching protein GlgX compare
EX31_RS24290 +0.5 2.1 type VI secretion system tube protein Hcp compare
EX31_RS04980 +0.5 2.0 thiosulfate sulfurtransferase GlpE compare
EX31_RS07225 +0.5 1.8 membrane dipeptidase compare
EX31_RS24140 +0.5 0.8 DUF2594 family protein compare
EX31_RS19990 +0.5 1.5 curli production assembly/transport protein CsgF compare
EX31_RS09490 +0.5 0.8 hypothetical protein compare
EX31_RS20840 +0.5 0.8 hypothetical protein compare
EX31_RS07825 +0.5 4.2 RNA polymerase sigma factor RpoS compare
EX31_RS20360 +0.5 2.9 chorismate mutase compare
EX31_RS10190 +0.5 1.7 glycosyltransferase compare
EX31_RS07350 +0.5 2.4 cadmium-translocating P-type ATPase compare
EX31_RS20940 +0.5 0.8 AlpA family transcriptional regulator compare
EX31_RS00110 +0.5 2.0 ABC transporter permease compare
EX31_RS10135 +0.5 1.3 ROK family transcriptional regulator compare
EX31_RS24545 +0.5 2.3 peptidase T compare
EX31_RS24760 +0.5 2.6 DNA polymerase III subunit theta compare
EX31_RS02560 +0.5 0.6 hypothetical protein compare
EX31_RS06870 +0.5 2.4 PTS maltose transporter subunit IICB compare
EX31_RS18940 +0.5 1.8 glycosyltransferase family 61 protein compare
EX31_RS24570 +0.5 2.0 high frequency lysogenization protein HflD compare
EX31_RS06975 +0.5 2.1 YdgA family protein compare
EX31_RS10660 +0.5 2.0 MFS transporter compare
EX31_RS11510 +0.5 1.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS20410 +0.5 1.7 hypothetical protein compare
EX31_RS01625 +0.5 2.3 Clp protease ClpP compare
EX31_RS00940 +0.5 1.4 manganese efflux pump MntP compare
EX31_RS09715 +0.5 1.6 M20 family metallopeptidase compare
EX31_RS25415 +0.5 0.5 helix-turn-helix domain-containing protein compare
EX31_RS05460 +0.5 4.0 cellulose synthase operon protein YhjQ compare
EX31_RS00540 +0.5 1.6 pentapeptide MXKDX repeat protein compare
EX31_RS02310 +0.5 0.8 hypothetical protein compare
EX31_RS10010 +0.5 2.0 acyl-CoA thioester hydrolase YciA compare
EX31_RS25910 +0.5 0.7 hypothetical protein compare
EX31_RS14095 +0.5 1.6 yfeABCD regulator yfeE compare
EX31_RS25645 +0.5 0.7 K(+)-transporting ATPase subunit F compare
EX31_RS16615 +0.5 0.8 membrane protein compare
EX31_RS14245 +0.5 2.8 HslU--HslV peptidase ATPase subunit compare
EX31_RS14410 +0.5 4.0 glycosyltransferase family 9 protein compare
EX31_RS19155 +0.5 2.0 dehydrogenase compare
EX31_RS21375 +0.5 1.9 fimbrial protein compare
EX31_RS02450 +0.5 2.2 AMP-binding protein compare
EX31_RS03220 +0.5 0.8 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS02295 +0.5 1.3 gluconate 2-dehydrogenase subunit 3 family protein compare
EX31_RS06750 +0.5 1.6 ABC transporter ATP-binding protein compare
EX31_RS01970 +0.5 0.5 hypothetical protein compare
EX31_RS01370 +0.5 1.6 oxidoreductase compare
EX31_RS21050 +0.5 2.2 acireductone dioxygenase compare
EX31_RS21020 +0.4 0.9 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS25060 +0.4 1.5 DUF2767 family protein compare
EX31_RS20140 +0.4 0.8 hypothetical protein compare
EX31_RS20950 +0.4 1.4 tRNA-Thr compare
EX31_RS10045 +0.4 1.7 ABC transporter ATP-binding protein compare
EX31_RS01425 +0.4 2.4 class I fructose-bisphosphate aldolase compare
EX31_RS18660 +0.4 2.3 cytidine deaminase compare
EX31_RS16010 +0.4 2.3 DUF1992 domain-containing protein compare
EX31_RS25215 +0.4 1.2 polysulfide reductase NrfD compare
EX31_RS01790 +0.4 1.3 excisionase compare
EX31_RS24600 +0.4 0.6 hypothetical protein compare
EX31_RS13760 +0.4 1.1 hypothetical protein compare
EX31_RS21230 +0.4 1.8 4'-phosphopantetheinyl transferase superfamily protein compare
EX31_RS12590 +0.4 1.6 hypothetical protein compare
EX31_RS10810 +0.4 2.3 AraC family transcriptional regulator compare
EX31_RS18150 +0.4 1.0 MBL fold metallo-hydrolase compare
EX31_RS24625 +0.4 0.7 DUF2766 domain-containing protein compare
EX31_RS07440 +0.4 0.9 urea carboxylase-associated family protein compare
EX31_RS05255 +0.4 1.1 hypothetical protein compare
EX31_RS01910 +0.4 2.4 lipase family protein compare
EX31_RS11190 +0.4 1.5 hypothetical protein compare
EX31_RS10670 +0.4 3.3 murein DD-endopeptidase MepM compare
EX31_RS10360 +0.4 1.1 ClbS/DfsB family four-helix bundle protein compare
EX31_RS11500 +0.4 0.9 glycosyltransferase family 2 protein compare
EX31_RS06435 +0.4 1.6 DUF333 domain-containing protein compare
EX31_RS10380 +0.4 1.5 DUF4440 domain-containing protein compare
EX31_RS25405 +0.4 1.5 DUF2767 family protein compare
EX31_RS25840 +0.4 1.9 transposase compare
EX31_RS25210 +0.4 1.7 sulfite exporter TauE/SafE family protein compare
EX31_RS16325 +0.4 1.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
EX31_RS17390 +0.4 1.7 succinylglutamate desuccinylase compare
EX31_RS02225 +0.4 1.3 hypothetical protein compare
EX31_RS10435 +0.4 1.1 biotin-dependent carboxyltransferase family protein compare
EX31_RS01205 +0.4 2.3 MurR/RpiR family transcriptional regulator compare
EX31_RS26030 +0.4 1.9 hypothetical protein compare
EX31_RS07645 +0.4 1.6 phage tail protein compare
EX31_RS15235 +0.4 2.2 hypothetical protein compare
EX31_RS09925 +0.4 1.2 alpha-ribazole phosphatase compare
EX31_RS20020 +0.4 1.4 GNAT family N-acetyltransferase compare
EX31_RS23975 +0.4 1.7 class I SAM-dependent methyltransferase compare
EX31_RS18290 +0.4 0.6 phage tail assembly protein compare
EX31_RS09135 +0.4 1.4 MFS transporter compare
EX31_RS17605 +0.4 1.3 pyridoxamine 5'-phosphate oxidase family protein compare
EX31_RS17475 +0.4 1.3 SDR family oxidoreductase compare
EX31_RS14400 +0.4 1.6 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS15460 +0.4 1.2 hypothetical protein compare
EX31_RS06285 +0.4 1.0 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS24745 +0.4 0.8 hypothetical protein compare
EX31_RS18795 +0.4 1.7 DMT family transporter compare
EX31_RS10530 +0.4 0.8 anti-adapter protein IraP compare
EX31_RS21295 +0.4 1.2 acyl carrier protein compare
EX31_RS19010 +0.4 1.6 alkylphosphonate utilization protein compare
EX31_RS02670 +0.4 1.0 YqgE/AlgH family protein compare
EX31_RS19560 +0.4 2.1 lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT compare
EX31_RS01045 +0.4 1.5 VOC family protein compare
EX31_RS19680 +0.4 2.2 penicillin-insensitive murein endopeptidase compare
EX31_RS09920 +0.4 1.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS24610 +0.4 1.2 hypothetical protein compare
EX31_RS20870 +0.4 1.6 colicin compare
EX31_RS01195 +0.4 1.3 SDR family oxidoreductase compare
EX31_RS22565 +0.4 1.4 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
EX31_RS11430 +0.4 1.7 SDR family oxidoreductase compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Ammonium chloride in Rahnella sp. WP5

For nitrogen source Ammonium chloride across organisms