Experiment set1IT084 for Pantoea sp. MT58

Compare to:

Nickel (II) chloride hexahydrate 20 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -7.1 -4.9 RNA polymerase-binding protein DksA compare
IAI47_04895 -5.0 -5.9 pyridoxine 5'-phosphate synthase compare
IAI47_08085 -5.0 -10.7 helix-turn-helix domain-containing protein compare
IAI47_00780 -5.0 -3.4 6-phosphofructokinase compare
IAI47_07065 -4.9 -14.1 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_17220 -4.8 -31.7 glutamate synthase large subunit compare
IAI47_07090 -4.7 -14.0 histidinol dehydrogenase compare
IAI47_09040 -4.6 -3.6 NAD-dependent epimerase compare
IAI47_07060 -4.6 -14.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_01030 -4.6 -20.2 branched-chain amino acid transaminase compare
IAI47_01040 -4.6 -14.7 threonine ammonia-lyase, biosynthetic compare
IAI47_00915 -4.5 -19.2 argininosuccinate synthase compare
IAI47_07070 -4.5 -10.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_17225 -4.5 -24.3 sulfite reductase subunit alpha compare
IAI47_16205 -4.5 -12.6 threonine synthase compare
IAI47_01050 -4.5 -22.3 ketol-acid reductoisomerase compare
IAI47_07080 -4.5 -11.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_03860 -4.4 -16.8 diaminopimelate decarboxylase compare
IAI47_10520 -4.4 -4.3 pyridoxamine 5'-phosphate oxidase compare
IAI47_01035 -4.4 -23.4 dihydroxy-acid dehydratase compare
IAI47_13900 -4.4 -20.2 asparagine synthase B compare
IAI47_09190 -4.3 -14.4 anthranilate synthase component 1 compare
IAI47_00920 -4.3 -20.2 argininosuccinate lyase compare
IAI47_00905 -4.3 -15.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_09180 -4.3 -14.0 anthranilate phosphoribosyltransferase compare
IAI47_06235 -4.3 -11.4 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_09275 -4.3 -11.7 orotidine-5'-phosphate decarboxylase compare
IAI47_16210 -4.3 -16.3 homoserine kinase compare
IAI47_16350 -4.2 -13.5 phosphoserine phosphatase compare
IAI47_16120 -4.2 -16.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_16215 -4.2 -20.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_03725 -4.1 -11.2 phosphoglycerate dehydrogenase compare
IAI47_09175 -4.1 -15.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_16115 -4.1 -23.6 carbamoyl-phosphate synthase large subunit compare
IAI47_13685 -4.1 -3.8 Tol-Pal system protein TolB compare
IAI47_16010 -4.1 -19.1 3-isopropylmalate dehydratase large subunit compare
IAI47_09165 -4.1 -9.9 tryptophan synthase subunit alpha compare
IAI47_00895 -4.1 -23.3 phosphoenolpyruvate carboxylase compare
IAI47_09170 -4.0 -14.2 tryptophan synthase subunit beta compare
IAI47_14945 -4.0 -3.9 pyrroline-5-carboxylate reductase compare
IAI47_07075 -4.0 -11.7 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_18015 -4.0 -17.7 homoserine O-succinyltransferase compare
IAI47_00880 -4.0 -18.9 cystathionine gamma-synthase compare
IAI47_03975 -4.0 -16.5 amino-acid N-acetyltransferase compare
IAI47_12215 -4.0 -16.4 dihydroorotase compare
IAI47_18040 -3.9 -21.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_15115 -3.9 -12.4 glutamate-5-semialdehyde dehydrogenase compare
IAI47_07095 -3.9 -13.8 ATP phosphoribosyltransferase compare
IAI47_07085 -3.8 -16.3 histidinol-phosphate transaminase compare
IAI47_05070 -3.8 -1.5 outer membrane protein assembly factor BamB compare
IAI47_15120 -3.8 -9.1 glutamate 5-kinase compare
IAI47_00910 -3.7 -11.9 acetylglutamate kinase compare
IAI47_07165 -3.7 -3.6 exodeoxyribonuclease I compare
IAI47_13695 -3.7 -1.5 colicin uptake protein TolR compare
IAI47_05275 -3.7 -7.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_16080 -3.6 -11.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_12865 -3.6 -13.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_17185 -3.5 -6.3 RNA polymerase factor sigma-54 compare
IAI47_09580 -3.5 -6.6 FNR family transcription factor compare
IAI47_13770 -3.5 -13.8 citrate synthase compare
IAI47_09185 -3.5 -6.9 glutamine amidotransferase compare
IAI47_16005 -3.4 -14.3 3-isopropylmalate dehydrogenase compare
IAI47_17965 -3.3 -14.3 glucose-6-phosphate isomerase compare
IAI47_16830 -3.3 -14.1 ornithine carbamoyltransferase compare
IAI47_12705 -3.2 -13.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_18830 -3.2 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_16015 -3.1 -7.9 3-isopropylmalate dehydratase small subunit compare
IAI47_09240 -3.1 -2.1 HTH-type transcriptional regulator CysB compare
IAI47_04930 -3.1 -18.3 phosphoribosylformylglycinamidine synthase compare
IAI47_00760 -3.1 -4.9 envelope stress response regulator transcription factor CpxR compare
IAI47_16870 -3.1 -10.3 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_00300 -3.1 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_16000 -3.1 -14.8 2-isopropylmalate synthase compare
IAI47_08445 -3.0 -2.6 Holliday junction branch migration protein RuvA compare
IAI47_18045 -3.0 -12.4 phosphoribosylamine--glycine ligase compare
IAI47_06275 -3.0 -16.5 amidophosphoribosyltransferase compare
IAI47_00600 -3.0 -12.3 orotate phosphoribosyltransferase compare
IAI47_04410 -2.9 -13.9 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_16860 -2.8 -13.5 aspartate carbamoyltransferase compare
IAI47_05180 -2.7 -12.2 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_13180 -2.7 -8.6 manganese-binding transcriptional regulator MntR compare
IAI47_00460 -2.7 -1.8 glutamate--ammonia ligase compare
IAI47_04160 -2.7 -12.1 phosphoadenylyl-sulfate reductase compare
IAI47_02695 -2.6 -11.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_12645 -2.6 -4.9 porin OmpA compare
IAI47_04120 -2.5 -15.7 GTP diphosphokinase compare
IAI47_14355 -2.4 -9.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_12915 -2.4 -9.8 leucine-responsive transcriptional regulator Lrp compare
IAI47_00890 -2.3 -11.2 methylenetetrahydrofolate reductase compare
IAI47_14350 -2.3 -5.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_13690 -2.3 -1.3 cell envelope integrity protein TolA compare
IAI47_09010 -2.2 -8.5 formyltetrahydrofolate deformylase compare
IAI47_17035 -2.2 -3.6 ribosome maturation factor RimP compare
IAI47_00455 -2.2 -9.5 nitrogen regulation protein NR(II) compare
IAI47_03820 -2.2 -4.9 site-specific tyrosine recombinase XerD compare
IAI47_18400 -2.1 -3.4 tyrosine recombinase XerC compare
IAI47_15810 -1.9 -4.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_05425 -1.9 -4.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_05440 -1.9 -8.5 cysteine synthase A compare
IAI47_06320 -1.8 -6.7 phosphate acetyltransferase compare
IAI47_01180 -1.8 -2.0 prolyl oligopeptidase family serine peptidase compare
IAI47_00655 -1.8 -4.3 glycosyltransferase family 4 protein compare
IAI47_11450 -1.8 -6.3 ankyrin repeat domain-containing protein compare
IAI47_06325 -1.8 -6.2 acetate kinase compare
IAI47_12885 -1.7 -7.9 pyruvate formate lyase 1-activating protein compare
IAI47_05155 -1.7 -12.1 polyphosphate kinase 1 compare
IAI47_03855 -1.7 -6.9 LysR family transcriptional regulator compare
IAI47_16220 -1.6 -4.6 thr operon leader peptide compare
IAI47_17560 -1.6 -1.4 ROK family transcriptional regulator compare
IAI47_10840 -1.6 -5.1 pyruvate kinase PykF compare
IAI47_00465 -1.6 -1.9 ribosome-dependent GTPase TypA compare
IAI47_04865 -1.6 -2.0 SoxR-reducing system protein RseC compare
IAI47_05520 -1.6 -1.7 tRNA-Ala compare
IAI47_10925 -1.6 -3.6 EAL domain-containing protein compare
IAI47_06245 -1.5 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_14325 -1.5 -2.0 ribosome-associated protein YbcJ compare
IAI47_06980 -1.5 -4.4 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_12880 -1.5 -11.4 formate C-acetyltransferase compare
IAI47_04835 -1.5 -6.6 ATP-dependent RNA helicase SrmB compare
IAI47_00900 -1.4 -8.1 acetylornithine deacetylase compare
IAI47_00450 -1.4 -9.1 nitrogen regulation protein NR(I) compare
IAI47_04800 -1.3 -1.3 RnfH family protein compare
IAI47_17215 -1.3 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_17020 -1.3 -2.4 30S ribosome-binding factor RbfA compare
IAI47_18410 -1.3 -3.2 diaminopimelate epimerase compare
IAI47_01365 -1.3 -1.5 inorganic phosphate transporter PitA compare
IAI47_13700 -1.3 -3.0 Tol-Pal system protein TolQ compare
IAI47_13760 -1.2 -2.6 succinate dehydrogenase membrane anchor subunit compare
IAI47_06355 -1.2 -6.6 transcriptional regulator LrhA compare
IAI47_11310 -1.2 -3.3 redox-regulated ATPase YchF compare
IAI47_16995 -1.2 -2.2 protein YrbN compare
IAI47_15540 -1.2 -6.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_04190 -1.2 -5.1 adenylyl-sulfate kinase compare
IAI47_00510 -1.2 -3.0 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI47_01955 -1.2 -7.3 aspartate aminotransferase family protein compare
IAI47_03135 -1.2 -5.1 outer membrane channel protein TolC compare
IAI47_13950 -1.2 -1.4 PhoH family protein compare
IAI47_16190 -1.2 -4.2 molybdopterin adenylyltransferase compare
IAI47_13480 -1.2 -1.7 molybdopterin synthase sulfur carrier subunit compare
IAI47_18315 -1.2 -4.6 HTH-type transcriptional regulator MetR compare
IAI47_09055 -1.2 -7.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_00410 -1.2 -7.5 molybdenum cofactor guanylyltransferase MobA compare
IAI47_04150 -1.2 -8.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_18055 -1.1 -3.9 DNA-binding protein HU-alpha compare
IAI47_04155 -1.1 -6.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_12030 -1.1 -7.3 PTS glucose transporter subunit IIBC compare
IAI47_17005 -1.1 -5.1 polyribonucleotide nucleotidyltransferase compare
IAI47_05525 -1.0 -1.6 tRNA-Ala compare
IAI47_08435 -1.0 -1.5 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_12300 -1.0 -2.1 hypothetical protein compare
IAI47_15005 -1.0 -1.7 hypothetical protein compare
IAI47_20850 -1.0 -2.9 TetR/AcrR family transcriptional regulator compare
IAI47_03615 -1.0 -4.5 glutathione synthase compare
IAI47_21035 -1.0 -2.6 TetR/AcrR family transcriptional regulator compare
IAI47_02585 -1.0 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_00595 -1.0 -4.8 ribonuclease PH compare
IAI47_04260 -0.9 -7.0 nitrate reductase subunit beta compare
IAI47_03685 -0.9 -5.6 erythrose-4-phosphate dehydrogenase compare
IAI47_13495 -0.9 -3.8 GTP 3',8-cyclase MoaA compare
IAI47_13145 -0.9 -4.1 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_06940 -0.9 -0.8 tyrosine-protein kinase Wzc compare
IAI47_04255 -0.9 -7.6 nitrate reductase subunit alpha compare
IAI47_08165 -0.9 -4.1 flagella biosynthesis regulatory protein FliZ compare
IAI47_04870 -0.9 -3.4 elongation factor 4 compare
IAI47_04265 -0.9 -4.9 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_16390 -0.9 -0.6 tRNA-Leu compare
IAI47_05465 -0.9 -2.9 bile acid:sodium symporter compare
IAI47_10935 -0.9 -3.8 vitamin B12 ABC transporter ATP-binding protein BtuD compare
IAI47_16600 -0.8 -1.6 tRNA-OTHER compare
IAI47_09245 -0.8 -2.9 YmiA family putative membrane protein compare
IAI47_21355 -0.8 -1.8 DUF3606 domain-containing protein compare
IAI47_03375 -0.8 -4.4 peptide chain release factor 3 compare
IAI47_21530 -0.8 -2.5 FeoA domain-containing protein compare
IAI47_04245 -0.8 -5.0 two-component system response regulator NarL compare
IAI47_04425 -0.8 -4.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_13745 -0.8 -2.1 2-oxoglutarate dehydrogenase E1 component compare
IAI47_18405 -0.8 -3.2 DUF484 domain-containing protein compare
IAI47_18145 -0.8 -0.9 elongation factor Tu compare
IAI47_08355 -0.8 -1.8 flagellar protein FlhE compare
IAI47_09210 -0.8 -3.6 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_00445 -0.8 -5.4 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_06270 -0.8 -4.4 colicin V production protein compare
IAI47_13485 -0.8 -2.6 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_07905 -0.7 -0.7 Arc family DNA-binding protein compare
IAI47_14775 -0.7 -2.1 transcriptional regulator NrdR compare
IAI47_18435 -0.7 -5.5 uroporphyrinogen-III C-methyltransferase compare
IAI47_01045 -0.7 -2.8 HTH-type transcriptional activator IlvY compare
IAI47_17645 -0.7 -2.2 hypothetical protein compare
IAI47_15110 -0.7 -2.5 chromophore lyase compare
IAI47_09395 -0.7 -1.6 phage shock protein PspA compare
IAI47_04775 -0.7 -2.1 SIR2 family protein compare
IAI47_15895 -0.7 -1.7 secA regulator SecM compare
IAI47_18770 -0.7 -1.7 type I addiction module toxin, SymE family compare
IAI47_13140 -0.7 -4.3 molybdopterin molybdotransferase MoeA compare
IAI47_04250 -0.7 -4.9 NarK family nitrate/nitrite MFS transporter compare
IAI47_13635 -0.7 -4.2 quinolinate synthase NadA compare
IAI47_13890 -0.7 -3.7 ROK family transcriptional regulator compare
IAI47_21235 -0.7 -1.0 hypothetical protein compare
IAI47_19690 -0.7 -0.8 hypothetical protein compare
IAI47_03595 -0.7 -3.4 YggS family pyridoxal phosphate-dependent enzyme compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms