Experiment set1IT084 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
BT1843 -5.7 -7.9 adenylosuccinate synthetase (NCBI ptt file) compare
BT3355 -5.7 -7.8 putative auxin-regulated protein (NCBI ptt file) compare
BT2046 -5.5 -4.4 putative cardiolipin synthetase (NCBI ptt file) compare
BT1222 -5.4 -3.8 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT1152 -5.4 -5.2 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT2006 -5.3 -3.7 hypothetical protein (NCBI ptt file) compare
BT2389 -5.1 -7.0 putative transport protein (NCBI ptt file) compare
BT2080 -5.0 -8.4 L-cysteine desulfidase cdsB (from data) compare
BT3758 -5.0 -5.9 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT4339 -4.9 -5.8 glutamine synthetase (NCBI ptt file) compare
BT3719 -4.9 -7.4 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT3806 -4.7 -5.3 conserved hypothetical protein (NCBI ptt file) compare
BT2415 -4.7 -13.9 aspartate aminotransferase (NCBI ptt file) compare
BT1607 -4.7 -6.0 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT2059 -4.7 -4.4 TonB (NCBI ptt file) compare
BT0892 -4.6 -2.6 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT3253 -4.5 -4.4 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT0203 -4.4 -5.3 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT3915 -4.4 -4.2 hypothetical protein (NCBI ptt file) compare
BT3193 -4.4 -13.2 putative coenzyme A transferase (NCBI ptt file) compare
BT0529 -4.4 -6.0 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT3077 -4.4 -3.4 ribonuclease R (NCBI ptt file) compare
BT1858 -4.4 -11.6 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT2403 -4.4 -14.9 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT1853 -4.3 -7.4 putative sulfatase (NCBI ptt file) compare
BT3717 -4.3 -7.1 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT3981 -4.2 -3.2 hypothetical protein (NCBI ptt file) compare
BT2837 -4.2 -14.1 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT1733 -4.2 -12.6 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT3757 -4.2 -8.1 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT1378 -4.2 -5.0 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT0530 -4.2 -7.9 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT0533 -4.1 -6.3 tryptophan synthase beta chain (NCBI ptt file) compare
BT3549 -4.1 -8.8 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3760 -4.1 -9.5 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT0891 -4.1 -2.8 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT3164 -4.0 -6.7 quinolinate synthetase A (NCBI ptt file) compare
BT4211 -4.0 -7.2 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT1379 -4.0 -9.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT2402 -4.0 -11.6 phosphoglycerate mutase (NCBI ptt file) compare
BT3184 -4.0 -13.9 L-aspartate oxidase (NCBI ptt file) compare
BT0527 -4.0 -8.0 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3759 -3.9 -12.3 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT2836 -3.9 -14.5 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT1374 -3.9 -9.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT3733 -3.8 -13.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT3936 -3.8 -4.3 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1859 -3.8 -7.4 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT1861 -3.8 -11.1 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT1381 -3.8 -7.9 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT3718 -3.8 -13.5 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT2003 -3.7 -2.7 putative membrane peptidase (NCBI ptt file) compare
BT0738 -3.7 -6.2 serine hydroxymethyltransferase (NCBI ptt file) compare
BT2401 -3.7 -10.5 threonine synthase (NCBI ptt file) compare
BT0900 -3.7 -6.0 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT3918 -3.6 -4.8 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT1857 -3.6 -6.8 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT0201 -3.6 -6.5 histidinol dehydrogenase (NCBI ptt file) compare
BT1153 -3.6 -8.5 phosphoserine aminotransferase (NCBI ptt file) compare
BT1262 -3.6 -2.5 putative transcriptional regulator (NCBI ptt file) compare
BT2077 -3.5 -12.2 acetolactate synthase large subunit (NCBI ptt file) compare
BT3845 -3.5 -7.1 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT3361 -3.5 -11.5 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT3933 -3.5 -7.2 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT2129 -3.4 -7.9 aspartate--ammonia ligase (NCBI ptt file) compare
BT3761 -3.4 -6.9 N-succinylglutamate synthase (from data) compare
BT1970 -3.4 -10.1 glutamate dehydrogenase (NCBI ptt file) compare
BT0200 -3.4 -7.1 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT0532 -3.4 -6.9 anthranilate synthase component I (NCBI ptt file) compare
BT2076 -3.3 -8.3 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT1380 -3.3 -3.2 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT1860 -3.3 -7.5 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT2299 -3.2 -3.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2042 -3.2 -3.0 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT3978 -3.2 -8.6 putative cardiolipin synthetase (NCBI ptt file) compare
BT1747 -3.2 -10.2 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT0528 -3.2 -6.2 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT3762 -3.1 -5.9 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT2078 -3.0 -10.1 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3395 -3.0 -5.5 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT3387 -3.0 -1.9 putative polysaccharide deacetylase (NCBI ptt file) compare
BT0747 -2.9 -6.1 putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file) compare
BT1377 -2.9 -4.0 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT1476 -2.9 -5.2 aspartate aminotransferase (NCBI ptt file) compare
BT1220 -2.8 -4.4 6-phosphogluconolactonase (NCBI ptt file) compare
BT0700 -2.7 -7.4 GTP pyrophosphokinase (NCBI ptt file) compare
BT0202 -2.7 -7.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3911 -2.7 -4.9 malate dehydrogenase (NCBI ptt file) compare
BT1375 -2.6 -9.2 aspartokinase (NCBI ptt file) compare
BT2074 -2.6 -7.5 ketol-acid reductoisomerase (NCBI ptt file) compare
BT1979 -2.6 -4.5 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT3268 -2.5 -3.9 glucose-inhibited division protein A (NCBI ptt file) compare
BT3866 -2.5 -13.2 ammonium-dependent carbamoyl phosphate synthetase CarB2 (EC 6.3.4.16) (from data) compare
BT3363 -2.5 -2.9 lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file) compare
BT3369 -2.5 -4.3 putative glycosyltransferase (NCBI ptt file) compare
BT3320 -2.5 -4.4 dihydrodipicolinate reductase (NCBI ptt file) compare
BT3980 -2.3 -2.5 hypothetical protein (NCBI ptt file) compare
BT4699 -2.3 -4.5 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT4562 -2.2 -2.7 hypothetical protein (NCBI ptt file) compare
BT2946 -2.2 -2.9 putative glycosyltransferase (NCBI ptt file) compare
BT0967 -2.2 -1.6 hypothetical protein (NCBI ptt file) compare
BT1526 -2.2 -4.6 myo-inositol-1-phosphate synthase (NCBI ptt file) compare
BT4097 -2.2 -3.6 Trk system K+ uptake protein trkH (NCBI ptt file) compare
BT2781 -2.1 -3.6 putative mannose-1-phosphate guanylyltransferase (NCBI ptt file) compare
BT1854 -2.1 -4.3 putative membrane-associated phospholipid phosphatase (NCBI ptt file) compare
BT0185 -2.1 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1363 -2.0 -2.2 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT0501 -2.0 -2.5 hypothetical protein (NCBI ptt file) compare
BT1154 -2.0 -2.5 ATP-independent RNA helicase (NCBI ptt file) compare
BT2527 -1.9 -5.9 uridine kinase (uridine monophosphokinase) (NCBI ptt file) compare
BT1561 -1.9 -2.3 hypothetical protein (NCBI ptt file) compare
BT0322 -1.9 -3.5 putative oxidoreductase (NCBI ptt file) compare
p5482_02 -1.9 -5.7 hypothetical protein (NCBI) compare
BT3770 -1.9 -2.7 transcriptional regulator (NCBI ptt file) compare
BT4551 -1.8 -3.1 putative GTPase, ThdF family (NCBI ptt file) compare
BT0621 -1.8 -3.4 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) compare
BT1112 -1.8 -3.2 transposase (NCBI ptt file) compare
BT1336 -1.7 -3.4 putative translation initiation inhibitor (NCBI ptt file) compare
BT2932 -1.7 -4.0 transcriptional regulator (NCBI ptt file) compare
BT0531 -1.7 -2.9 anthranilate synthase component II (NCBI ptt file) compare
BT1270 -1.7 -5.5 putative Na+/H+ antiporter (NCBI ptt file) compare
BT4265 -1.7 -2.7 GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) compare
BT1444 -1.7 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT2315 -1.7 -3.1 hypothetical protein (NCBI ptt file) compare
BT4557 -1.7 -4.1 hypothetical protein (NCBI ptt file) compare
BT2546 -1.6 -1.7 transcriptional regulator (NCBI ptt file) compare
BT3550 -1.6 -4.1 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare
BT3168 -1.6 -5.6 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT3935 -1.6 -4.8 aminotransferase (NCBI ptt file) compare
BT4590 -1.6 -3.5 conserved hypothetical protein (NCBI ptt file) compare
BT1746 -1.6 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0173 -1.6 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT3905 -1.6 -5.6 putative alkaline protease aprF (NCBI ptt file) compare
BT0617 -1.5 -3.0 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) compare
BT4610 -1.5 -1.9 RecA (NCBI ptt file) compare
BT4258 -1.5 -4.8 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT1667 -1.5 -1.7 hypothetical protein (NCBI ptt file) compare
BT1524 -1.5 -1.1 hypothetical protein (NCBI ptt file) compare
BT0241 -1.5 -2.2 hypothetical protein (NCBI ptt file) compare
BT3374 -1.4 -4.2 putative carbamoyl-phosphate-synthetase (NCBI ptt file) compare
BT1972 -1.4 -7.6 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT3405 -1.4 -3.6 conserved hypothetical protein (NCBI ptt file) compare
BT3286 -1.4 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT0927 -1.4 -2.3 two-component system sensor histidine kinase (NCBI ptt file) compare
BT1609 -1.4 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT1656 -1.4 -2.1 putative transcriptional regulator (NCBI ptt file) compare
BT0619 -1.4 -2.5 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) compare
BT2049 -1.4 -2.7 transcriptional regulator (NCBI ptt file) compare
BT2153 -1.3 -3.1 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT3457 -1.3 -3.4 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3737 -1.3 -1.6 hypothetical protein (NCBI ptt file) compare
BT4098 -1.3 -1.4 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT1069 -1.3 -3.5 conserved hypothetical protein, putative transcriptional regulator (NCBI ptt file) compare
BT3370 -1.3 -3.0 putative glycosyltransferase yibD (NCBI ptt file) compare
BT0648 -1.3 -2.7 molybdopterin biosynthesis protein (NCBI ptt file) compare
BT2045 -1.3 -1.9 hypothetical protein (NCBI ptt file) compare
BT0651 -1.2 -2.2 thiamine biosynthesis protein ThiG (NCBI ptt file) compare
BT1103 -1.2 -1.5 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3394 -1.2 -4.3 putative arginine decarboxylase (NCBI ptt file) compare
BT1835 -1.2 -3.2 biotin synthase (NCBI ptt file) compare
BT3220 -1.2 -6.2 TPR-repeat-containing protein (NCBI ptt file) compare
BT_2008 -1.2 -1.2 hypothetical protein (RefSeq) compare
BT3912 -1.2 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT1186 -1.2 -1.4 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT2844 -1.1 -5.5 conserved hypothetical protein (NCBI ptt file) compare
BT1466 -1.1 -2.2 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT3724 -1.1 -3.3 cationic outer membrane protein precursor (NCBI ptt file) compare
BT1713 -1.1 -3.7 putative acylneuraminate cytidylyltransferase (NCBI ptt file) compare
BT0028 -1.1 -2.4 alkaline phosphatase (NCBI ptt file) compare
BT3368 -1.1 -1.1 putative glycosyltransferase (NCBI ptt file) compare
BT4449 -1.1 -3.1 putative dehydrogenase (NCBI ptt file) compare
BT0912 -1.1 -2.3 DNA-binding protein HU (NCBI ptt file) compare
BT4138 -1.1 -4.3 putative aminotransferase (NCBI ptt file) compare
BT4382 -1.1 -2.5 hypothetical protein (NCBI ptt file) compare
BT0418 -1.1 -1.4 outer membrane porin F precursor (NCBI ptt file) compare
BT0475 -1.1 -2.1 putative phosphoheptose isomerase (NCBI ptt file) compare
BT3022 -1.1 -1.1 hypothetical protein (NCBI ptt file) compare
BT1976 -1.1 -1.6 hypothetical protein (NCBI ptt file) compare
BT1309 -1.1 -2.6 hypothetical protein (NCBI ptt file) compare
BT1836 -1.1 -5.7 thiamine biosynthesis protein ThiH (NCBI ptt file) compare
BT1580 -1.1 -2.1 lactoylglutathione lyase (NCBI ptt file) compare
BT3812 -1.1 -3.3 phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase; bifunctional purine biosynthesis protein purH (NCBI ptt file) compare
BT0922 -1.1 -2.9 hypothetical protein (NCBI ptt file) compare
BT3832 -1.1 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT4403 -1.0 -2.9 putative anti-sigma factor (NCBI ptt file) compare
BT4753 -1.0 -1.4 hypothetical protein (NCBI ptt file) compare
BT1442 -1.0 -4.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT4654 -1.0 -2.9 ROK family transcriptional repressor, with glucokinase domain (NCBI ptt file) compare
BT1206 -1.0 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4310 -1.0 -4.7 NADPH-dependent glutamate synthase small chain (NCBI ptt file) compare
BT3992 -1.0 -2.8 putative anti-sigma factor (NCBI ptt file) compare
BT4607 -1.0 -2.9 conserved hypothetical protein (NCBI ptt file) compare
BT1844 -1.0 -1.7 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT2687 -1.0 -2.8 cation efflux system protein (NCBI ptt file) compare
BT2688 -1.0 -2.8 outer membrane efflux protein (NCBI ptt file) compare
BT0443 -1.0 -1.1 thermostable beta-glucosidase B (NCBI ptt file) compare
BT0740 -1.0 -1.0 flavoredoxin (NCBI ptt file) compare
BT2600 -1.0 -2.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1982 -1.0 -2.1 hypothetical protein (NCBI ptt file) compare
BT1944 -1.0 -1.7 putative transposase (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Mannose in Bacteroides thetaiotaomicron VPI-5482

For carbon source D-Mannose across organisms