Experiment set1IT083 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Nickel (II) chloride hexahydrate 0.625 mM

200 most important genes:

  gene name fitness t score description  
AO353_04355 -3.3 -3.2 homoserine dehydrogenase compare
AO353_14220 -3.3 -3.1 ribosomal large subunit pseudouridine synthase D compare
AO353_07315 -3.2 -3.8 rRNA methyltransferase compare
AO353_18540 -3.1 -4.1 pseudouridine synthase compare
AO353_07355 -3.0 -6.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_02250 -2.9 -4.4 chorismate synthase compare
AO353_13100 -2.9 -2.7 GTPase RsgA compare
AO353_09040 -2.7 -3.2 diaminopimelate epimerase compare
AO353_09890 -2.7 -6.9 phosphate ABC transporter ATP-binding protein compare
AO353_19790 -2.5 -11.5 sodium:proton antiporter conserved
AO353_04175 -2.5 -5.7 glycerol uptake facilitator GlpF compare
AO353_14150 -2.5 -2.9 peptidylprolyl isomerase compare
AO353_10780 -2.5 -2.6 DNA-binding protein compare
AO353_08915 -2.3 -13.4 cystathionine gamma-synthase conserved
AO353_19145 -2.3 -5.4 protease HtpX compare
AO353_11730 -2.3 -10.8 glutamate--cysteine ligase compare
AO353_08835 -2.2 -11.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_00825 -2.2 -4.6 porin compare
AO353_01410 -2.2 -4.3 ribonuclease E compare
AO353_03615 -2.1 -4.1 cold-shock protein compare
AO353_02070 -2.1 -7.4 prephenate dehydratase compare
AO353_06045 -2.0 -8.2 exodeoxyribonuclease V subunit beta compare
AO353_03585 -2.0 -3.2 ATP-dependent DNA helicase RuvA compare
AO353_12420 -1.9 -4.2 predicted FeS cluster maintenance protein (from data) compare
AO353_07445 -1.9 -1.7 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_12345 -1.9 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_11770 -1.9 -2.5 molecular chaperone Hsp33 compare
AO353_12070 -1.9 -8.2 imidazoleglycerol-phosphate dehydratase compare
AO353_04190 -1.8 -2.7 glycerol-3-phosphate dehydrogenase compare
AO353_15830 -1.8 -3.8 transcriptional regulator compare
AO353_16805 -1.8 -6.1 recombinase RecA compare
AO353_07325 -1.8 -2.3 diadenosine tetraphosphatase compare
AO353_15185 -1.8 -5.5 ATPase compare
AO353_03590 -1.7 -4.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_18135 -1.7 -2.2 hypothetical protein compare
AO353_03710 -1.7 -3.4 formyltetrahydrofolate deformylase compare
AO353_10455 -1.6 -2.1 tRNA modification GTPase MnmE compare
AO353_13390 -1.6 -7.1 N-acylglucosamine 2-epimerase compare
AO353_20175 -1.6 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_06585 -1.6 -6.4 hypothetical protein compare
AO353_05690 -1.6 -3.8 SsrA-binding protein compare
AO353_14395 -1.6 -3.4 poly(A) polymerase compare
AO353_03580 -1.6 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_17750 -1.6 -2.8 transcriptional regulator compare
AO353_11165 -1.5 -8.6 hypothetical protein compare
AO353_19360 -1.5 -2.2 peroxiredoxin compare
AO353_12115 -1.5 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12935 -1.5 -3.8 glycosyltransferase compare
AO353_09885 -1.5 -2.9 transcriptional regulator PhoU compare
AO353_13225 -1.5 -3.7 50S ribosomal protein L9 compare
AO353_28930 -1.5 -2.1 hypothetical protein compare
AO353_09240 -1.5 -3.9 acetylglutamate kinase compare
AO353_10670 -1.5 -6.6 shikimate dehydrogenase compare
AO353_09945 -1.4 -4.4 LysR family transcriptional regulator compare
AO353_08265 -1.4 -5.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_18305 -1.4 -4.4 RNA helicase compare
AO353_03795 -1.4 -4.2 fumarate hydratase compare
AO353_06050 -1.4 -6.0 exodeoxyribonuclease V subunit gamma compare
AO353_00105 -1.4 -2.0 hypothetical protein compare
AO353_09875 -1.4 -1.8 hypothetical protein compare
AO353_05105 -1.4 -6.9 histidinol-phosphate aminotransferase compare
AO353_06495 -1.4 -3.9 gamma-glutamyl phosphate reductase compare
AO353_08015 -1.3 -6.2 5,10-methylenetetrahydrofolate reductase compare
AO353_20340 -1.3 -3.3 gamma-carboxygeranoyl-CoA hydratase compare
AO353_15445 -1.3 -2.8 disulfide bond formation protein B compare
AO353_17175 -1.3 -2.8 beta-ketoadipyl CoA thiolase compare
AO353_06710 -1.3 -2.1 riboflavin synthase subunit alpha compare
AO353_14585 -1.3 -4.8 ribosomal-protein-alanine acetyltransferase compare
AO353_05240 -1.3 -2.7 rod shape-determining protein MreD compare
AO353_27000 -1.3 -1.8 hypothetical protein compare
AO353_08110 -1.3 -5.6 glutathione synthetase compare
AO353_09905 -1.3 -6.9 phosphate-binding protein compare
AO353_05465 -1.3 -8.9 flavodoxin compare
AO353_24425 -1.2 -1.9 amino acid ABC transporter permease compare
AO353_00430 -1.2 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07940 -1.2 -1.7 hypothetical protein compare
AO353_02810 -1.2 -5.2 histidine kinase compare
AO353_20185 -1.2 -5.2 DNA-binding protein compare
AO353_22215 -1.2 -2.6 hypothetical protein compare
AO353_14740 -1.2 -3.4 GTP-binding protein compare
AO353_27500 -1.2 -2.3 hypothetical protein compare
AO353_17290 -1.2 -4.4 multidrug transporter compare
AO353_00650 -1.2 -2.0 cytochrome biogenesis protein compare
AO353_12930 -1.1 -2.5 GlcNAc-PI de-N-acetylase compare
AO353_09050 -1.1 -2.4 recombinase XerC compare
AO353_14775 -1.1 -5.0 hypothetical protein compare
AO353_09900 -1.1 -6.7 phosphate ABC transporter permease compare
AO353_09440 -1.1 -2.5 type VI secretion protein compare
AO353_10445 -1.1 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_00460 -1.1 -2.5 TetR family transcriptional regulator compare
AO353_22360 -1.1 -2.7 ABC transporter ATP-binding protein compare
AO353_00505 -1.1 -3.8 3-ketoacyl-CoA thiolase compare
AO353_12075 -1.1 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_21595 -1.1 -4.4 serine/threonine protein kinase compare
AO353_17975 -1.1 -5.5 arabinose ABC transporter permease compare
AO353_06040 -1.1 -2.4 exodeoxyribonuclease V subunit alpha compare
AO353_15250 -1.1 -2.8 cytochrome B compare
AO353_07365 -1.1 -4.1 glycerol-3-phosphate acyltransferase compare
AO353_09000 -1.1 -4.3 argininosuccinate lyase compare
AO353_05110 -1.1 -6.6 histidinol dehydrogenase compare
AO353_04365 -1.1 -4.0 recombinase XerD compare
AO353_05550 -1.1 -4.3 pseudouridine synthase compare
AO353_24830 -1.1 -3.1 enoyl-CoA hydratase compare
AO353_15900 -1.1 -2.0 GTP-binding protein compare
AO353_17970 -1.0 -8.0 hypothetical protein compare
AO353_20785 -1.0 -3.8 carbon storage regulator CsrA compare
AO353_06850 -1.0 -3.0 MFS transporter compare
AO353_12690 -1.0 -0.9 acyl carrier protein compare
AO353_01355 -1.0 -5.3 3-oxoacyl-ACP synthase compare
AO353_12915 -1.0 -4.9 carbamoyltransferase compare
AO353_15785 -1.0 -5.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_23270 -1.0 -3.5 hypothetical protein compare
AO353_13200 -1.0 -6.6 exoribonuclease R compare
AO353_20565 -1.0 -1.5 tRNA-Ala compare
AO353_10990 -1.0 -5.2 glutamate:protein symporter compare
AO353_13640 -1.0 -2.9 histidine kinase compare
AO353_18780 -1.0 -4.1 cobyrinic acid a,c-diamide synthase compare
AO353_21615 -1.0 -6.5 methionine synthase compare
AO353_20660 -1.0 -3.0 pseudouridine synthase compare
AO353_04520 -1.0 -3.4 elongation factor 4 compare
AO353_10950 -1.0 -5.8 thiol:disulfide interchange protein compare
AO353_08685 -1.0 -4.9 N-acetylglutamate synthase compare
AO353_09860 -1.0 -6.5 histidine kinase compare
AO353_02005 -1.0 -1.7 hypothetical protein compare
AO353_14495 -1.0 -6.2 acetolactate synthase 3 catalytic subunit compare
AO353_06320 -1.0 -2.8 AsnC family transcriptional regulator compare
AO353_00835 -0.9 -4.4 transporter compare
AO353_08765 -0.9 -3.0 hypothetical protein compare
AO353_00610 -0.9 -1.5 cytochrome C oxidase Cbb3 compare
AO353_02075 -0.9 -5.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_24340 -0.9 -1.5 TetR family transcriptional regulator compare
AO353_04185 -0.9 -4.5 DeoR family transcriptional regulator compare
AO353_12105 -0.9 -4.0 peptidase S41 compare
AO353_18630 -0.9 -4.9 beta-ketoacyl-ACP synthase compare
AO353_13580 -0.9 -2.2 copper resistance protein CopZ compare
AO353_18960 -0.9 -1.3 terminase compare
AO353_00185 -0.9 -1.8 phage tail protein compare
AO353_24120 -0.9 -2.0 hypothetical protein compare
AO353_27650 -0.9 -3.0 cell division protein FtsK compare
AO353_10710 -0.9 -3.3 tryptophan synthase subunit beta compare
AO353_25575 -0.9 -3.0 GNAT family acetyltransferase compare
AO353_08165 -0.9 -2.1 pyrroline-5-carboxylate reductase compare
AO353_08475 -0.9 -4.0 phosphoserine phosphatase compare
AO353_24130 -0.9 -2.3 hypothetical protein compare
AO353_07155 -0.9 -4.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12500 -0.9 -1.0 shikimate kinase compare
AO353_21630 -0.9 -2.1 precorrin-4 C11-methyltransferase compare
AO353_14500 -0.9 -3.6 acetolactate synthase 3 regulatory subunit compare
AO353_00510 -0.9 -3.1 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_02060 -0.9 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_12365 -0.9 -2.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_02040 -0.9 -1.5 integration host factor subunit beta compare
AO353_15410 -0.9 -1.2 hypothetical protein compare
AO353_04180 -0.8 -4.7 glycerol kinase compare
AO353_09895 -0.8 -3.5 phosphate ABC transporter permease compare
AO353_08420 -0.8 -4.7 ATPase P compare
AO353_13160 -0.8 -1.8 membrane protease HflC compare
AO353_23350 -0.8 -2.4 hypothetical protein compare
AO353_27720 -0.8 -2.3 cupin compare
AO353_20170 -0.8 -3.1 trigger factor compare
AO353_24625 -0.8 -2.6 hypothetical protein compare
AO353_10930 -0.8 -4.1 DNA polymerase I compare
AO353_22110 -0.8 -2.5 nitrate reductase compare
AO353_03005 -0.8 -2.9 succinylarginine dihydrolase compare
AO353_17205 -0.8 -2.1 beta-ketoadipyl CoA thiolase compare
AO353_10730 -0.8 -1.5 hypothetical protein compare
AO353_15905 -0.8 -3.8 outer membrane protein assembly factor BamB compare
AO353_21625 -0.8 -1.6 Fe/S biogenesis protein NfuA compare
AO353_07850 -0.8 -2.8 ATP-dependent RNA helicase compare
AO353_06100 -0.8 -1.7 thymidylate synthase compare
AO353_16425 -0.8 -1.2 Fe-S metabolism protein SufE compare
AO353_09320 -0.8 -4.7 ATP-dependent DNA helicase RecG compare
AO353_20095 -0.8 -2.6 histidine kinase compare
AO353_25385 -0.8 -2.2 molybdenum cofactor biosynthesis protein MoaC compare
AO353_06720 -0.8 -1.1 NrdR family transcriptional regulator compare
AO353_01485 -0.8 -3.4 ABC transporter compare
AO353_26390 -0.8 -1.7 glyoxalase compare
AO353_22920 -0.8 -3.1 GntR family transcriptional regulator compare
AO353_23785 -0.8 -1.4 hypothetical protein compare
AO353_02995 -0.7 -4.1 succinylglutamate desuccinylase compare
AO353_00635 -0.7 -1.8 hypothetical protein compare
AO353_08975 -0.7 -3.1 heme biosynthesis protein HemY compare
AO353_26520 -0.7 -2.0 TetR family transcriptional regulator compare
AO353_04360 -0.7 -3.5 protein-disulfide isomerase compare
AO353_15260 -0.7 -3.3 stringent starvation protein A compare
AO353_28015 -0.7 -1.4 hypothetical protein compare
AO353_17635 -0.7 -4.1 RNA polymerase subunit sigma compare
AO353_03715 -0.7 -1.1 H-NS histone compare
AO353_21245 -0.7 -2.2 hypothetical protein compare
AO353_01685 -0.7 -1.5 hypothetical protein compare
AO353_13155 -0.7 -1.9 hypothetical protein compare
AO353_10705 -0.7 -2.3 tryptophan synthase subunit alpha compare
AO353_20505 -0.7 -2.8 cytidyltransferase compare
AO353_18425 -0.7 -2.4 hypothetical protein compare
AO353_19090 -0.7 -1.4 MarR family transcriptional regulator compare
AO353_03015 -0.7 -2.5 arginine N-succinyltransferase compare
AO353_22475 -0.7 -2.2 alkaline phosphatase compare
AO353_22600 -0.7 -1.0 hypothetical protein compare
AO353_26280 -0.7 -2.4 peptidase M48, Ste24p compare
AO353_25260 -0.7 -2.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Nickel (II) chloride hexahydrate across organisms