Experiment set1IT083 for Caulobacter crescentus NA1000

Compare to:

L-Arginine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00684 +3.3 14.9 anti-sigma factor, ChrR-family compare
CCNA_01373 +3.3 12.5 hypothetical protein compare
CCNA_02842 +3.2 15.7 two-component sensor histidine kinase compare
CCNA_02845 +3.2 12.3 two-component response regulator compare
CCNA_01220 +3.1 11.2 7-keto-8-aminopelargonate synthetase compare
CCNA_02849 +2.8 15.8 cytochrome c-type biogenesis heme chaperone compare
CCNA_03740 +2.7 13.4 cysteine synthase compare
CCNA_02132 +2.7 13.5 LacI-family transcriptional regulator compare
CCNA_02848 +2.6 14.2 heme chaperone-apocytochrome heme-lyase compare
CCNA_03609 +2.6 9.9 outer membrane protein compare
CCNA_03643 +2.5 4.3 succinate dehydrogenase membrane anchor subunit compare
CCNA_00719 +2.4 13.1 type I secretion adaptor protein hlyD compare
CCNA_01379 +2.3 12.3 type I secretion outer membrane protein rsaFb compare
CCNA_01212 +2.3 12.5 dATP pyrophosphohydrolase compare
CCNA_01060 +2.3 8.5 type I protein secretion ATP-binding protein RsaD compare
CCNA_02252 +2.3 6.8 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_03786 +2.2 12.0 heme chaperone heme-lyase compare
CCNA_01217 +2.2 14.9 phosphatidylglycerophosphate synthase compare
CCNA_01222 +2.2 8.2 NADH-ubiquinone oxidoreductase compare
CCNA_03832 +2.2 7.6 TetR-family transcriptional regulator compare
CCNA_00506 +2.1 11.2 cytochrome b compare
CCNA_02847 +2.1 9.5 cytochrome c-type biogenesis protein ccmH compare
CCNA_01218 +2.1 8.2 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_01223 +2.1 11.7 acyl-CoA synthetase compare
CCNA_01061 +2.1 6.8 type I secretion adaptor protein RsaE compare
CCNA_02250 +2.1 4.1 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_00505 +2.1 9.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03788 +2.0 9.4 thiol:disulfide interchange protein tlpA compare
CCNA_01242 +2.0 17.4 amino acid permease compare
CCNA_03782 +2.0 5.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_02151 +2.0 5.6 exodeoxyribonuclease VII small subunit compare
CCNA_03713 +2.0 13.5 RNA polymerase sigma-54 factor rpoN compare
CCNA_02957 +2.0 5.2 ArsR-family transcriptional regulator compare
CCNA_00720 +1.9 11.3 type I protein secretion ATP-binding protein/type I protein secretion transmembrane subunit/type I secretion processing peptidase compare
CCNA_02567 +1.9 13.4 sensory transduction histidine kinase pleC compare
CCNA_00976 +1.9 4.4 signal peptide peptidase A compare
CCNA_03371 +1.9 6.8 bacterioferritin compare
CCNA_01526 +1.8 6.1 flagellar biosynthesis regulatory protein flaF compare
CCNA_02534 +1.8 1.9 hypothetical protein compare
CCNA_02850 +1.8 9.3 cytochrome c-type biogenesis protein ccmI compare
CCNA_02619 +1.7 14.5 stomatin/prohibitin-related protein compare
CCNA_02225 +1.7 2.7 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01817 +1.7 6.6 nitrogen assimilation regulatory protein ntrX compare
CCNA_01850 +1.7 12.6 quinol cytochrome oxidase polypeptide I compare
CCNA_00950 +1.6 11.4 flagellar M-ring protein FliF compare
CCNA_02138 +1.6 9.4 hypothetical protein compare
CCNA_03424 +1.6 10.7 AAA-family response regulator tacA compare
CCNA_01129 +1.6 5.7 flagellar biosynthesis protein FliQ compare
CCNA_01848 +1.6 8.4 quinol cytochrome oxidase polypeptide IV compare
CCNA_03136 +1.6 5.1 flagellar export protein FliJ compare
CCNA_00952 +1.6 8.7 flagellar assembly protein FlbE/FliH compare
CCNA_02037 +1.6 5.8 ATP-dependent endopeptidase Lon compare
CCNA_01849 +1.6 9.2 quinol cytochrome oxidase polypeptide III compare
CCNA_01851 +1.6 11.8 quinol cytochrome oxidase polypeptide II compare
CCNA_01002 +1.6 8.1 flagellar biosyntheis protein FliP compare
CCNA_00999 +1.6 6.6 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_03513 +1.6 9.1 cytochrome c oxidase subunit III coxC compare
CCNA_00951 +1.5 9.6 flagellar motor switch protein FliG compare
CCNA_01816 +1.5 7.9 nitrogen regulation protein ntrY compare
CCNA_03030 +1.5 6.9 cytochrome c2 compare
CCNA_00507 +1.5 6.4 cytochrome c1 compare
CCNA_03783 +1.5 5.5 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_00780 +1.5 10.0 N-formylglutamate deformylase compare
CCNA_01221 +1.5 2.7 acyl carrier protein compare
CCNA_02242 +1.5 7.6 PHB granule-associated protein, phasin2 compare
CCNA_00250 +1.4 9.9 poly(3-hydroxyalkanoate) depolymerase compare
CCNA_01085 +1.4 5.7 DNA-cytosine methyltransferase compare
CCNA_00554 +1.4 8.7 methyltransferase compare
CCNA_00953 +1.4 5.0 flagellar motor switch protein FliN compare
CCNA_01001 +1.4 6.2 ribokinase compare
CCNA_01525 +1.4 5.8 flagellar biosynthesis repressor flbT compare
CCNA_01219 +1.4 2.7 putative cytosolic protein compare
CCNA_00726 +1.4 10.0 acyl-CoA dehydrogenase compare
CCNA_02199 +1.3 10.4 methyltransferase compare
CCNA_02309 +1.3 4.1 EF hand domain protein compare
CCNA_02004 +1.3 2.5 SOS-induced inhibitor of cell division SidA compare
CCNA_01443 +1.3 4.5 hypothetical protein compare
CCNA_01840 +1.3 9.3 MerR-family transcriptional regulator compare
CCNA_02011 +1.3 6.4 methylmalonyl CoA epimerase compare
CCNA_03026 +1.3 5.7 two-component response regulator petR compare
CCNA_01728 +1.3 7.8 short chain dehydrogenase compare
CCNA_00137 +1.3 7.4 hybrid two-component histidine kinase/receiver protein ShkA compare
CCNA_03135 +1.3 8.8 flagellum-specific ATP synthase fliL compare
CCNA_03857 +1.3 3.9 Tim44-like domain protein compare
CCNA_00699 +1.3 5.5 LSU ribosomal protein L28P compare
CCNA_02000 +1.3 0.9 SSU ribosomal protein S2P compare
CCNA_01500 +1.3 8.0 hypothetical protein compare
CCNA_01790 +1.3 3.9 protein translocase subunit secG compare
CCNA_03944 +1.3 1.3 hypothetical protein compare
CCNA_00847 +1.3 6.4 leucine-responsive regulatory protein compare
CCNA_00939 +1.3 5.6 MarR-family transcriptional regulator compare
CCNA_01006 +1.3 4.8 flagellar hook-basal body complex protein FliE compare
CCNA_02575 +1.3 3.7 hypothetical protein compare
CCNA_02140 +1.3 6.1 flagellar motor switch protein fliM compare
CCNA_01593 +1.3 6.9 Xaa-pro aminopeptidase compare
CCNA_00252 +1.3 8.0 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_02012 +1.3 6.9 metal-dependent hydrolase compare
CCNA_00752 +1.3 7.8 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_01367 +1.3 7.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
CCNA_R0054 +1.3 2.4 tRNA-Gly compare
CCNA_00747 +1.3 6.7 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_01295 +1.3 8.1 integral membrane protein compare
CCNA_03858 +1.2 7.6 protein translocase subunit secB compare
CCNA_00954 +1.2 8.6 AAA-family response regulator flbD compare
CCNA_03646 +1.2 7.4 ATPase compare
CCNA_03849 +1.2 6.2 fructokinase compare
CCNA_01116 +1.2 7.8 histidine protein kinase DivJ compare
CCNA_03893 +1.2 3.4 hypothetical protein compare
CCNA_01926 +1.2 7.1 GGDEF diguanylate cyclase DgcB compare
CCNA_03260 +1.2 5.3 queuosine biosynthesis protein QueD compare
CCNA_01752 +1.2 6.5 YicC-family protein compare
CCNA_02687 +1.2 6.0 serine-pyruvate aminotransferase compare
CCNA_01690 +1.2 3.8 MAPEG family membrane protein compare
CCNA_03672 +1.2 4.8 superoxide dismutase compare
CCNA_00956 +1.2 8.1 flagellar biosynthesis protein FlhA compare
CCNA_01573 +1.2 6.6 ArsR-family transcriptional regulator compare
CCNA_00028 +1.2 3.1 TonB-dependent receptor compare
CCNA_02254 +1.2 3.4 isovaleryl-CoA dehydrogenase compare
CCNA_03948 +1.1 2.1 hypothetical protein compare
CCNA_02430 +1.1 5.5 conserved hypothetical cytosolic protein compare
CCNA_00805 +1.1 2.4 GTP-binding protein YihA compare
CCNA_01614 +1.1 1.4 hypothetical protein compare
CCNA_01742 +1.1 4.9 hypothetical protein compare
CCNA_02546 +1.1 7.4 GGDEF/response regulator protein PleD compare
CCNA_01847 +1.1 8.1 cytochrome c oxidase assembly protein Surf1 compare
CCNA_01729 +1.1 3.3 transporter, sodium/bile acid symporter family compare
CCNA_02942 +1.1 2.5 nucleoside-diphosphate-sugar epimerase compare
CCNA_02063 +1.1 5.1 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_02103 +1.1 3.1 hypothetical protein compare
CCNA_01003 +1.1 4.4 flagellar biosynthesis protein FliO compare
CCNA_02805 +1.1 5.8 hypothetical protein compare
CCNA_02835 +1.1 2.6 CpxP-related protein compare
CCNA_00398 +1.1 7.2 hypothetical protein compare
CCNA_03949 +1.1 5.3 hypothetical protein compare
CCNA_00620 +1.1 8.2 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase compare
CCNA_01931 +1.1 6.1 TetR-family transcriptional regulator compare
CCNA_01811 +1.1 2.9 competence/damage-inducible protein CinA compare
CCNA_02416 +1.1 4.6 DNA-binding protein HU compare
CCNA_00264 +1.1 6.7 C4-dicarboxylate transport protein compare
CCNA_00750 +1.1 7.2 FeaR-family transcriptional regulator compare
CCNA_03514 +1.1 5.7 cytochrome c oxidase assembly protein ctaG compare
CCNA_00756 +1.0 2.3 hypothetical protein compare
CCNA_03617 +1.0 4.4 Copper(I)-binding protein compare
CCNA_02075 +1.0 1.0 peptidoglycan binding endopeptidase DipM compare
CCNA_01619 +1.0 4.7 NYN domain protein compare
CCNA_02139 +1.0 5.0 polar flagellum positioning protein pflI compare
CCNA_03062 +1.0 7.5 cell wall hydrolase family protein compare
CCNA_02297 +1.0 3.7 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_03280 +1.0 8.9 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01216 +1.0 4.9 phosphohydrolase, Icc family compare
CCNA_01541 +1.0 7.0 LysR-family transcriptional regulator compare
CCNA_02644 +1.0 2.7 cell division protein FtsL compare
CCNA_03043 +1.0 3.8 type IV pilin protein pilA compare
CCNA_01826 +1.0 5.4 vitamin B12 receptor compare
CCNA_02401 +1.0 7.3 SalR-family ligand-binding transcriptional regulator compare
CCNA_02324 +1.0 6.0 heat shock protein 33 hsp33 compare
CCNA_03518 +1.0 7.4 cytochrome c oxidase polypeptide II coxB compare
CCNA_01913 +1.0 5.6 MarR-family transcriptional regulator compare
CCNA_01608 +1.0 5.4 TetR-family transcriptional regulator compare
CCNA_01804 +1.0 5.1 glutathione peroxidase compare
CCNA_01930 +1.0 4.1 ADP-heptose LPS heptosyltransferase compare
CCNA_01827 +1.0 5.3 cobyric acid synthase CobQ compare
CCNA_01186 +1.0 4.4 hypothetical protein compare
CCNA_01361 +1.0 1.9 PepSY superfamily protein compare
CCNA_00020 +1.0 0.7 hypothetical protein compare
CCNA_01020 +1.0 5.2 LacI-family transcriptional regulator compare
CCNA_00217 +1.0 1.0 thiol:disulfide interchange protein DsbD compare
CCNA_00781 +1.0 7.6 two-component receiver protein CpdR compare
CCNA_00675 +1.0 3.3 VapC-like PIN domain ribonuclease compare
CCNA_00429 +1.0 2.1 hypothetical protein compare
CCNA_03524 +0.9 4.8 di-/tripeptide transporter compare
CCNA_01596 +0.9 2.8 DNA helicase II compare
CCNA_00518 +0.9 3.4 LSU ribosomal protein L25P compare
CCNA_02387 +0.9 7.0 glutathione reductase compare
CCNA_00409 +0.9 1.1 hypothetical protein compare
CCNA_01193 +0.9 6.9 amylosucrase compare
CCNA_01131 +0.9 5.1 flagellar biosynthesis protein FlhB compare
CCNA_01375 +0.9 3.2 lactoylglutathione lyase compare
CCNA_02447 +0.9 7.2 PspA/IM30 family regulatory protein compare
CCNA_01684 +0.9 4.4 phenylalanine-4-hydroxylase compare
CCNA_01928 +0.9 3.0 conserved ACT domain protein compare
CCNA_03522 +0.9 6.6 Zn-dependent protease TldD compare
CCNA_02067 +0.9 4.2 conserved membrane spanning protein compare
CCNA_00311 +0.9 6.6 Zn-dependent protease family protein compare
CCNA_01276 +0.9 1.4 cytochrome c5 compare
CCNA_01130 +0.9 4.8 flagellar biosynthesis protein FliR compare
CCNA_02368 +0.9 6.7 alpha-glucosidase compare
CCNA_01226 +0.9 2.9 hypothetical protein compare
CCNA_00947 +0.9 6.6 flagellar hook protein FlgE compare
CCNA_02646 +0.9 1.4 cell division protein MraZ compare
CCNA_03951 +0.9 3.7 hypothetical protein compare
CCNA_00919 +0.9 3.0 hypothetical protein compare
CCNA_03530 +0.9 2.1 hypothetical protein compare
CCNA_01756 +0.9 1.1 hypothetical protein compare
CCNA_03271 +0.9 6.0 methionine gamma-lyase compare
CCNA_02339 +0.9 6.4 methyltransferase compare
CCNA_00544 +0.9 6.3 acetyl-CoA acetyltransferase compare
CCNA_00811 +0.9 4.8 TetR-family transcriptional regulator compare
CCNA_03252 +0.9 3.7 CopY/TcrY-family transcriptional regulator compare
CCNA_03214 +0.9 5.4 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Arginine in Caulobacter crescentus NA1000

For nitrogen source L-Arginine across organisms