Experiment set1IT082 for Rahnella sp. WP5

Compare to:

L-Glutamine nitrogen source; ShewMM media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS03940 -6.0 -7.2 homoserine kinase compare
EX31_RS15005 -5.8 -15.6 dihydroxy-acid dehydratase compare
EX31_RS04035 -5.8 -10.4 phosphoserine phosphatase compare
EX31_RS15020 -5.7 -17.7 ketol-acid reductoisomerase compare
EX31_RS12400 -5.6 -5.5 RNA polymerase factor sigma-54 compare
EX31_RS03695 -5.6 -6.6 3-isopropylmalate dehydratase small subunit compare
EX31_RS03690 -5.5 -8.5 3-isopropylmalate dehydratase large subunit compare
EX31_RS03835 -5.5 -5.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS12785 -5.5 -12.3 aspartate carbamoyltransferase compare
EX31_RS03685 -5.4 -13.1 3-isopropylmalate dehydrogenase compare
EX31_RS14180 -5.3 -16.5 argininosuccinate lyase compare
EX31_RS03935 -5.3 -10.2 threonine synthase compare
EX31_RS02530 -5.3 -5.1 ABC transporter ATP-binding protein compare
EX31_RS20975 -5.3 -6.3 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS14190 -5.2 -13.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03830 -5.2 -18.0 carbamoyl-phosphate synthase large subunit compare
EX31_RS16855 -5.2 -14.7 phosphoribosylamine--glycine ligase compare
EX31_RS20980 -5.2 -7.1 glutamate 5-kinase compare
EX31_RS14215 -5.1 -22.0 cystathionine gamma-synthase compare
EX31_RS13445 -5.1 -16.1 argininosuccinate synthase compare
EX31_RS16860 -5.1 -20.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS14500 -5.0 -13.7 orotate phosphoribosyltransferase compare
EX31_RS09980 -5.0 -3.4 tryptophan synthase subunit alpha compare
EX31_RS09855 -5.0 -3.4 orotidine-5'-phosphate decarboxylase compare
EX31_RS14185 -5.0 -9.5 acetylglutamate kinase compare
EX31_RS23245 -5.0 -17.1 asparagine synthase B compare
EX31_RS21470 -4.9 -9.5 phosphoglycerate dehydrogenase compare
EX31_RS11470 -4.9 -3.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS13275 -4.9 -14.0 diaminopimelate decarboxylase compare
EX31_RS20495 -4.8 -10.3 outer membrane protein assembly factor BamB compare
EX31_RS14205 -4.8 -15.7 methylenetetrahydrofolate reductase compare
EX31_RS03945 -4.8 -25.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS12825 -4.8 -8.6 ornithine carbamoyltransferase compare
EX31_RS20450 -4.7 -3.3 IMP dehydrogenase compare
EX31_RS02520 -4.7 -4.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03250 -4.7 -11.3 RNA polymerase-binding protein DksA compare
EX31_RS11735 -4.6 -10.8 homoserine O-succinyltransferase compare
EX31_RS11440 -4.6 -5.5 histidinol dehydrogenase compare
EX31_RS22625 -4.6 -4.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS11465 -4.6 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS21895 -4.6 -18.6 phosphoribosylformylglycinamidine synthase compare
EX31_RS22620 -4.6 -5.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS22750 -4.5 -5.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS13160 -4.4 -14.2 amino-acid N-acetyltransferase compare
EX31_RS24385 -4.4 -3.0 dihydroorotase compare
EX31_RS20175 -4.3 -9.9 cysteine synthase A compare
EX31_RS09970 -4.3 -7.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS11445 -4.2 -7.0 histidinol-phosphate transaminase compare
EX31_RS02515 -4.2 -5.8 PAS domain-containing protein compare
EX31_RS09965 -4.2 -7.0 anthranilate phosphoribosyltransferase compare
EX31_RS11450 -4.2 -5.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS18540 -4.2 -2.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS22695 -4.1 -10.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11460 -4.1 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS09975 -4.1 -8.7 tryptophan synthase subunit beta compare
EX31_RS18095 -4.0 -5.5 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS19570 -4.0 -15.4 amidophosphoribosyltransferase compare
EX31_RS12510 -4.0 -15.7 FAD-dependent oxidoreductase compare
EX31_RS07955 -4.0 -18.8 GTP diphosphokinase compare
EX31_RS11455 -3.9 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS09955 -3.8 -8.2 anthranilate synthase component 1 compare
EX31_RS02690 -3.8 -7.7 pyrroline-5-carboxylate reductase compare
EX31_RS07895 -3.8 -12.0 phosphoadenylyl-sulfate reductase compare
EX31_RS12515 -3.7 -27.2 glutamate synthase large subunit compare
EX31_RS18255 -3.6 -2.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS18530 -3.6 -15.0 leucine-responsive transcriptional regulator Lrp compare
EX31_RS23440 -3.6 -2.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS09960 -3.6 -5.9 glutamine amidotransferase compare
EX31_RS07585 -3.6 -11.4 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS07590 -3.4 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09890 -3.4 -12.7 HTH-type transcriptional regulator CysB compare
EX31_RS22250 -3.3 -6.7 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS22245 -3.3 -5.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS14340 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS14310 -3.2 -5.8 6-phosphofructokinase compare
EX31_RS23490 -3.2 -3.7 cell envelope integrity protein TolA compare
EX31_RS03680 -3.1 -11.5 2-isopropylmalate synthase compare
EX31_RS07900 -3.1 -16.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS04105 -3.1 -2.9 helix-turn-helix domain-containing protein compare
EX31_RS07560 -3.0 -20.2 ATP-dependent chaperone ClpB compare
EX31_RS07870 -2.9 -8.9 adenylyl-sulfate kinase compare
EX31_RS14335 -2.9 -2.8 serine O-acetyltransferase compare
EX31_RS20735 -2.8 -5.9 exodeoxyribonuclease V subunit beta compare
EX31_RS11435 -2.7 -6.5 ATP phosphoribosyltransferase compare
EX31_RS10515 -2.7 -5.3 disulfide bond formation protein DsbB compare
EX31_RS18525 -2.5 -4.4 DNA translocase FtsK compare
EX31_RS20190 -2.5 -2.4 PTS glucose transporter subunit IIA compare
EX31_RS13815 -2.5 -1.7 ribonuclease T compare
EX31_RS07905 -2.4 -14.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07880 -2.4 -14.6 sulfate adenylyltransferase subunit CysD compare
EX31_RS09580 -2.4 -2.1 flagellar motor switch protein FliN compare
EX31_RS23485 -2.4 -2.8 colicin uptake protein TolR compare
EX31_RS11525 -2.3 -3.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS14405 -2.3 -2.2 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS15870 -2.3 -5.2 glutamate--ammonia ligase compare
EX31_RS21850 -2.2 -2.8 pyridoxine 5'-phosphate synthase compare
EX31_RS09895 -2.2 -3.4 type I DNA topoisomerase compare
EX31_RS12875 -2.2 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS06070 -2.2 -9.3 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS07875 -2.2 -15.0 sulfate adenylyltransferase subunit CysN compare
EX31_RS23495 -2.2 -8.3 Tol-Pal system protein TolB compare
EX31_RS23480 -2.1 -5.1 Tol-Pal system protein TolQ compare
EX31_RS06055 -2.1 -4.4 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS06065 -2.1 -7.7 phosphate ABC transporter permease PstC compare
EX31_RS14620 -2.0 -2.7 SCP2 domain-containing protein compare
EX31_RS15010 -2.0 -8.1 threonine ammonia-lyase, biosynthetic compare
EX31_RS06150 -2.0 -13.0 transcriptional regulator AsnC compare
EX31_RS08720 -1.9 -11.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS17640 -1.9 -2.0 TetR/AcrR family transcriptional regulator compare
EX31_RS03645 -1.9 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS08745 -1.9 -1.9 50S ribosomal protein L9 compare
EX31_RS21805 -1.9 -3.3 anti-sigma-E factor RseA compare
EX31_RS09560 -1.9 -3.8 flagella biosynthesis chaperone FliJ compare
EX31_RS15910 -1.9 -7.9 thiol:disulfide interchange protein DsbA compare
EX31_RS25370 -1.9 -10.3 HTH-type transcriptional regulator MetR compare
EX31_RS07595 -1.8 -6.9 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS22430 -1.8 -2.0 hemolysin expression modulator Hha compare
EX31_RS23500 -1.8 -4.4 peptidoglycan-associated lipoprotein Pal compare
EX31_RS09550 -1.8 -2.3 flagellar assembly protein FliH compare
EX31_RS04725 -1.8 -4.5 shikimate kinase AroK compare
EX31_RS19655 -1.7 -5.3 beta-ketoacyl-ACP synthase I compare
EX31_RS14730 -1.7 -1.3 DUF2756 domain-containing protein compare
EX31_RS19610 -1.7 -7.3 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS11675 -1.7 -2.5 Holliday junction branch migration protein RuvA compare
EX31_RS01530 -1.7 -1.5 hypothetical protein compare
EX31_RS03480 -1.7 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS18625 -1.7 -3.5 heavy metal-binding domain-containing protein compare
EX31_RS03790 -1.7 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS05785 -1.7 -3.2 superoxide dismutase [Mn] compare
EX31_RS10115 -1.6 -8.4 formyltetrahydrofolate deformylase compare
EX31_RS04710 -1.6 -4.3 adenine-specific DNA-methyltransferase compare
EX31_RS15015 -1.6 -4.0 HTH-type transcriptional activator IlvY compare
EX31_RS14325 -1.6 -8.6 envelope stress sensor histidine kinase CpxA compare
EX31_RS20530 -1.6 -6.3 nucleoside-diphosphate kinase compare
EX31_RS03775 -1.6 -3.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS13480 -1.5 -4.9 site-specific tyrosine recombinase XerD compare
EX31_RS24395 -1.5 -4.2 ribonuclease E compare
EX31_RS19485 -1.5 -5.7 phosphate acetyltransferase compare
EX31_RS23315 -1.5 -4.9 replication initiation negative regulator SeqA compare
EX31_RS19205 -1.4 -3.2 50S ribosomal protein L25 compare
EX31_RS25340 -1.4 -4.0 hypothetical protein compare
EX31_RS09080 -1.4 -1.8 LysR family transcriptional regulator compare
EX31_RS18570 -1.4 -1.7 cold shock-like protein CspD compare
EX31_RS11355 -1.4 -3.3 chemotaxis protein CheY compare
EX31_RS11350 -1.4 -3.2 protein phosphatase CheZ compare
EX31_RS10075 -1.4 -7.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
EX31_RS22740 -1.4 -6.7 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS10100 -1.4 -2.1 two-component system response regulator RssB compare
EX31_RS18445 -1.4 -2.2 DUF2732 domain-containing protein compare
EX31_RS14200 -1.3 -9.4 phosphoenolpyruvate carboxylase compare
EX31_RS08535 -1.3 -1.8 30S ribosome-binding factor RbfA compare
EX31_RS09940 -1.3 -5.8 23S rRNA pseudouridine(2605) synthase RluB compare
EX31_RS11330 -1.3 -5.2 flagellar synthesis chaperone protein FlgN compare
EX31_RS16725 -1.3 -2.6 phytanoyl-CoA dioxygenase compare
EX31_RS21400 -1.3 -4.5 transketolase compare
EX31_RS04630 -1.2 -8.3 aspartate aminotransferase family protein compare
EX31_RS21020 -1.2 -1.8 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS15660 -1.2 -3.6 TIGR01620 family protein compare
EX31_RS15165 -1.2 -4.0 tyrosine recombinase XerC compare
EX31_RS06060 -1.2 -3.0 phosphate ABC transporter permease PstA compare
EX31_RS11815 -1.2 -7.1 glucose-6-phosphate isomerase compare
EX31_RS12500 -1.2 -7.8 stringent starvation protein A compare
EX31_RS11270 -1.2 -6.4 flagellar hook-associated protein FlgK compare
EX31_RS05145 -1.2 -5.3 inorganic phosphate transporter PitA compare
EX31_RS06140 -1.2 -7.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS06620 -1.1 -3.0 electron transport complex subunit RsxA compare
EX31_RS10665 -1.1 -3.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
EX31_RS16690 -1.1 -3.2 CoA transferase compare
EX31_RS17100 -1.1 -2.3 colicin immunity protein Cui compare
EX31_RS19480 -1.1 -5.2 acetate kinase compare
EX31_RS15865 -1.1 -8.5 ribosome-dependent GTPase TypA compare
EX31_RS23450 -1.1 -3.3 ADP-forming succinate--CoA ligase subunit beta compare
EX31_RS17005 -1.1 -2.5 carbohydrate ABC transporter permease compare
EX31_RS09470 -1.1 -2.3 flagella biosynthesis regulatory protein FliT compare
EX31_RS13870 -1.1 -1.5 pyruvate kinase PykF compare
EX31_RS15880 -1.1 -5.9 nitrogen regulation protein NR(I) compare
EX31_RS02385 -1.1 -1.1 hypothetical protein compare
EX31_RS00580 -1.1 -2.5 LysR family transcriptional regulator compare
EX31_RS19600 -1.0 -5.1 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS17290 -1.0 -3.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS22735 -1.0 -7.0 glycine cleavage system transcriptional repressor compare
EX31_RS08650 -1.0 -3.4 transcriptional regulator ArgR compare
EX31_RS03010 -1.0 -4.7 helix-turn-helix domain-containing protein compare
EX31_RS04390 -1.0 -2.0 DNA polymerase III subunit chi compare
EX31_RS03900 -1.0 -3.9 molecular chaperone DnaK compare
EX31_RS11340 -1.0 -4.5 flagellar biosynthesis protein FlhA compare
EX31_RS02525 -1.0 -4.8 ABC transporter permease compare
EX31_RS06000 -1.0 -2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS22120 -1.0 -3.4 transcriptional regulator NrdR compare
EX31_RS02130 -1.0 -2.0 amino acid-binding protein compare
EX31_RS19430 -1.0 -3.4 NADH-quinone oxidoreductase subunit B compare
EX31_RS07830 -1.0 -3.3 murein hydrolase activator NlpD compare
EX31_RS01595 -1.0 -1.0 phage minor tail protein G compare
EX31_RS09535 -1.0 -1.7 flagellar hook-basal body complex protein FliE compare
EX31_RS09545 -1.0 -3.0 flagellar motor switch protein FliG compare
EX31_RS20185 -1.0 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS18270 -1.0 -7.1 formate C-acetyltransferase compare
EX31_RS20180 -1.0 -1.8 phosphocarrier protein Hpr compare
EX31_RS03215 -1.0 -2.0 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
EX31_RS19690 -1.0 -2.8 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Glutamine in Rahnella sp. WP5

For nitrogen source L-Glutamine across organisms