Experiment set1IT082 for Pantoea sp. MT58

Compare to:

Nickel (II) chloride hexahydrate 20 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_04895 -5.9 -4.1 pyridoxine 5'-phosphate synthase compare
IAI47_07090 -5.0 -13.4 histidinol dehydrogenase compare
IAI47_16015 -5.0 -8.4 3-isopropylmalate dehydratase small subunit compare
IAI47_13685 -5.0 -3.9 Tol-Pal system protein TolB compare
IAI47_17225 -4.9 -23.9 sulfite reductase subunit alpha compare
IAI47_00920 -4.9 -20.6 argininosuccinate lyase compare
IAI47_16210 -4.9 -16.7 homoserine kinase compare
IAI47_13900 -4.8 -19.4 asparagine synthase B compare
IAI47_17220 -4.8 -30.9 glutamate synthase large subunit compare
IAI47_16005 -4.7 -14.9 3-isopropylmalate dehydrogenase compare
IAI47_01050 -4.7 -22.8 ketol-acid reductoisomerase compare
IAI47_01040 -4.7 -15.3 threonine ammonia-lyase, biosynthetic compare
IAI47_07075 -4.7 -10.8 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_01030 -4.6 -20.8 branched-chain amino acid transaminase compare
IAI47_00915 -4.6 -21.5 argininosuccinate synthase compare
IAI47_16080 -4.6 -11.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_07060 -4.6 -14.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_03860 -4.6 -16.9 diaminopimelate decarboxylase compare
IAI47_09165 -4.6 -7.7 tryptophan synthase subunit alpha compare
IAI47_01035 -4.6 -23.8 dihydroxy-acid dehydratase compare
IAI47_07085 -4.5 -17.2 histidinol-phosphate transaminase compare
IAI47_07065 -4.5 -13.7 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16205 -4.5 -12.0 threonine synthase compare
IAI47_16350 -4.5 -13.6 phosphoserine phosphatase compare
IAI47_00780 -4.4 -5.3 6-phosphofructokinase compare
IAI47_07070 -4.4 -9.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_08085 -4.4 -8.9 helix-turn-helix domain-containing protein compare
IAI47_00895 -4.3 -22.2 phosphoenolpyruvate carboxylase compare
IAI47_09175 -4.3 -15.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_09190 -4.3 -13.9 anthranilate synthase component 1 compare
IAI47_16115 -4.3 -25.1 carbamoyl-phosphate synthase large subunit compare
IAI47_18040 -4.3 -22.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_07095 -4.3 -13.0 ATP phosphoribosyltransferase compare
IAI47_14945 -4.3 -3.0 pyrroline-5-carboxylate reductase compare
IAI47_15115 -4.2 -10.9 glutamate-5-semialdehyde dehydrogenase compare
IAI47_03725 -4.2 -12.2 phosphoglycerate dehydrogenase compare
IAI47_06235 -4.2 -10.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_18015 -4.2 -19.9 homoserine O-succinyltransferase compare
IAI47_13690 -4.2 -1.7 cell envelope integrity protein TolA compare
IAI47_09170 -4.1 -13.5 tryptophan synthase subunit beta compare
IAI47_00880 -4.1 -17.8 cystathionine gamma-synthase compare
IAI47_09185 -4.0 -6.3 glutamine amidotransferase compare
IAI47_09180 -4.0 -14.7 anthranilate phosphoribosyltransferase compare
IAI47_12705 -4.0 -16.1 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_00910 -3.9 -12.1 acetylglutamate kinase compare
IAI47_07080 -3.9 -13.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_16120 -3.9 -12.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00905 -3.8 -13.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_16215 -3.8 -20.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_05420 -3.8 -2.6 PTS glucose transporter subunit IIA compare
IAI47_12215 -3.8 -14.9 dihydroorotase compare
IAI47_16010 -3.8 -17.0 3-isopropylmalate dehydratase large subunit compare
IAI47_03975 -3.8 -16.5 amino-acid N-acetyltransferase compare
IAI47_05070 -3.8 -1.5 outer membrane protein assembly factor BamB compare
IAI47_13770 -3.7 -13.4 citrate synthase compare
IAI47_12865 -3.7 -13.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_13695 -3.7 -1.5 colicin uptake protein TolR compare
IAI47_16830 -3.7 -16.2 ornithine carbamoyltransferase compare
IAI47_04930 -3.7 -22.2 phosphoribosylformylglycinamidine synthase compare
IAI47_15635 -3.6 -3.4 RNA polymerase-binding protein DksA compare
IAI47_16000 -3.6 -17.6 2-isopropylmalate synthase compare
IAI47_10520 -3.5 -4.8 pyridoxamine 5'-phosphate oxidase compare
IAI47_15120 -3.5 -9.1 glutamate 5-kinase compare
IAI47_05275 -3.5 -6.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_09275 -3.5 -10.1 orotidine-5'-phosphate decarboxylase compare
IAI47_12915 -3.4 -13.4 leucine-responsive transcriptional regulator Lrp compare
IAI47_09040 -3.4 -3.6 NAD-dependent epimerase compare
IAI47_17185 -3.4 -7.5 RNA polymerase factor sigma-54 compare
IAI47_05180 -3.4 -14.8 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_00600 -3.3 -11.2 orotate phosphoribosyltransferase compare
IAI47_16860 -3.3 -15.8 aspartate carbamoyltransferase compare
IAI47_06275 -3.2 -17.9 amidophosphoribosyltransferase compare
IAI47_14350 -3.2 -9.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_16870 -3.1 -8.4 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_00300 -3.0 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07165 -2.9 -3.1 exodeoxyribonuclease I compare
IAI47_18045 -2.9 -10.1 phosphoribosylamine--glycine ligase compare
IAI47_00875 -2.8 -2.5 met regulon transcriptional regulator MetJ compare
IAI47_14355 -2.8 -12.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_15810 -2.7 -5.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_17965 -2.7 -14.6 glucose-6-phosphate isomerase compare
IAI47_00460 -2.7 -1.8 glutamate--ammonia ligase compare
IAI47_09240 -2.6 -3.1 HTH-type transcriptional regulator CysB compare
IAI47_13745 -2.6 -5.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_04410 -2.6 -12.5 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_13180 -2.6 -7.4 manganese-binding transcriptional regulator MntR compare
IAI47_02695 -2.6 -12.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_03855 -2.6 -8.8 LysR family transcriptional regulator compare
IAI47_04160 -2.5 -12.0 phosphoadenylyl-sulfate reductase compare
IAI47_04120 -2.3 -14.7 GTP diphosphokinase compare
IAI47_00890 -2.3 -9.3 methylenetetrahydrofolate reductase compare
IAI47_06355 -2.3 -10.6 transcriptional regulator LrhA compare
IAI47_00455 -2.3 -9.8 nitrogen regulation protein NR(II) compare
IAI47_18400 -2.2 -3.2 tyrosine recombinase XerC compare
IAI47_06980 -2.2 -4.6 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_09580 -2.1 -4.5 FNR family transcription factor compare
IAI47_12645 -2.1 -4.8 porin OmpA compare
IAI47_18530 -2.1 -2.1 thioredoxin TrxA compare
IAI47_18830 -2.0 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_05520 -2.0 -1.9 tRNA-Ala compare
IAI47_05155 -1.9 -13.0 polyphosphate kinase 1 compare
IAI47_14325 -1.9 -1.7 ribosome-associated protein YbcJ compare
IAI47_17035 -1.8 -2.7 ribosome maturation factor RimP compare
IAI47_06405 -1.8 -3.3 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_09010 -1.7 -6.0 formyltetrahydrofolate deformylase compare
IAI47_13050 -1.5 -3.9 YbjN domain-containing protein compare
IAI47_05465 -1.5 -3.5 bile acid:sodium symporter compare
IAI47_18215 -1.5 -2.0 Trk system potassium transporter TrkH compare
IAI47_04155 -1.5 -8.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_16220 -1.5 -3.6 thr operon leader peptide compare
IAI47_11450 -1.5 -5.1 ankyrin repeat domain-containing protein compare
IAI47_17020 -1.5 -2.7 30S ribosome-binding factor RbfA compare
IAI47_04150 -1.5 -9.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_00900 -1.4 -8.3 acetylornithine deacetylase compare
IAI47_18315 -1.4 -4.9 HTH-type transcriptional regulator MetR compare
IAI47_04190 -1.4 -5.0 adenylyl-sulfate kinase compare
IAI47_00465 -1.4 -2.4 ribosome-dependent GTPase TypA compare
IAI47_05440 -1.4 -7.2 cysteine synthase A compare
IAI47_01955 -1.3 -7.7 aspartate aminotransferase family protein compare
IAI47_05425 -1.3 -4.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_00450 -1.3 -7.6 nitrogen regulation protein NR(I) compare
IAI47_19945 -1.2 -1.1 hypothetical protein compare
IAI47_02585 -1.2 -3.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_04175 -1.2 -6.7 uroporphyrinogen-III C-methyltransferase compare
IAI47_11375 -1.2 -2.0 hypothetical protein compare
IAI47_03375 -1.2 -6.1 peptide chain release factor 3 compare
IAI47_00735 -1.1 -1.7 protein-export chaperone SecB compare
IAI47_13700 -1.1 -3.3 Tol-Pal system protein TolQ compare
IAI47_09360 -1.1 -1.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_13740 -1.1 -1.5 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_12880 -1.1 -8.4 formate C-acetyltransferase compare
IAI47_13885 -1.1 -1.4 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_03685 -1.1 -5.8 erythrose-4-phosphate dehydrogenase compare
IAI47_17005 -1.1 -4.8 polyribonucleotide nucleotidyltransferase compare
IAI47_12885 -1.1 -6.0 pyruvate formate lyase 1-activating protein compare
IAI47_06320 -1.0 -4.1 phosphate acetyltransferase compare
IAI47_21830 -1.0 -1.1 hypothetical protein compare
IAI47_00655 -1.0 -4.7 glycosyltransferase family 4 protein compare
IAI47_08440 -1.0 -1.2 crossover junction endodeoxyribonuclease RuvC compare
IAI47_00760 -1.0 -3.2 envelope stress response regulator transcription factor CpxR compare
IAI47_12570 -0.9 -1.1 tRNA-Ser compare
IAI47_07930 -0.9 -1.5 DUF2158 domain-containing protein compare
IAI47_03135 -0.9 -4.1 outer membrane channel protein TolC compare
IAI47_11420 -0.9 -1.4 hypothetical protein compare
IAI47_09055 -0.9 -6.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_01045 -0.9 -3.3 HTH-type transcriptional activator IlvY compare
IAI47_11475 -0.9 -0.8 hypothetical protein compare
IAI47_18595 -0.9 -6.2 endoglucanase compare
IAI47_16190 -0.9 -3.0 molybdopterin adenylyltransferase compare
IAI47_02090 -0.9 -2.6 elongation factor Tu compare
IAI47_06420 -0.8 -2.1 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_18840 -0.8 -1.9 membrane protein insertion efficiency factor YidD compare
IAI47_03595 -0.8 -3.2 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_04835 -0.8 -4.0 ATP-dependent RNA helicase SrmB compare
IAI47_21790 -0.8 -1.9 helix-turn-helix domain-containing protein compare
IAI47_04270 -0.8 -4.6 respiratory nitrate reductase subunit gamma compare
IAI47_04705 -0.8 -0.9 hypothetical protein compare
IAI47_21600 -0.8 -0.9 EamA family transporter compare
IAI47_20850 -0.8 -2.2 TetR/AcrR family transcriptional regulator compare
IAI47_00410 -0.8 -5.7 molybdenum cofactor guanylyltransferase MobA compare
IAI47_12175 -0.8 -1.6 anti-sigma-28 factor FlgM compare
IAI47_21375 -0.8 -2.8 CsbD family protein compare
IAI47_13145 -0.8 -3.8 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_18520 -0.8 -6.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_10840 -0.8 -2.1 pyruvate kinase PykF compare
IAI47_12760 -0.8 -4.8 porin OmpF compare
IAI47_17560 -0.8 -0.7 ROK family transcriptional regulator compare
IAI47_12790 -0.8 -0.7 chromosome partition protein MukE compare
IAI47_06565 -0.8 -1.4 YejL family protein compare
IAI47_09615 -0.8 -3.2 LysR family transcriptional regulator compare
IAI47_07550 -0.8 -1.0 tRNA-Asn compare
IAI47_13495 -0.7 -3.3 GTP 3',8-cyclase MoaA compare
IAI47_15540 -0.7 -4.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_04870 -0.7 -2.9 elongation factor 4 compare
IAI47_13480 -0.7 -2.5 molybdopterin synthase sulfur carrier subunit compare
IAI47_06245 -0.7 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_13310 -0.7 -2.3 MerR family transcriptional regulator compare
IAI47_18410 -0.7 -2.2 diaminopimelate epimerase compare
IAI47_16095 -0.7 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_19045 -0.7 -2.7 two-component-system connector protein YcgZ compare
IAI47_21675 -0.7 -2.2 helix-turn-helix domain-containing protein compare
IAI47_20705 -0.7 -1.0 sulfur carrier protein ThiS compare
IAI47_14555 -0.7 -2.5 hemolysin expression modulator Hha compare
IAI47_11310 -0.7 -1.4 redox-regulated ATPase YchF compare
IAI47_02040 -0.7 -3.5 peptidylprolyl isomerase compare
IAI47_10470 -0.7 -0.6 electron transport complex subunit E compare
IAI47_12925 -0.7 -2.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_03150 -0.7 -4.8 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_08035 -0.7 -1.4 flagellar hook-basal body complex protein FliE compare
IAI47_13140 -0.7 -3.6 molybdopterin molybdotransferase MoeA compare
IAI47_12300 -0.7 -1.8 hypothetical protein compare
IAI47_13755 -0.7 -3.3 succinate dehydrogenase flavoprotein subunit compare
IAI47_00870 -0.7 -0.5 50S ribosomal protein L31 compare
IAI47_18055 -0.7 -3.3 DNA-binding protein HU-alpha compare
IAI47_08040 -0.7 -1.9 hypothetical protein compare
IAI47_12920 -0.7 -2.1 thioredoxin-disulfide reductase compare
IAI47_12085 -0.7 -2.8 phosphate acyltransferase PlsX compare
IAI47_21370 -0.7 -3.2 MerR family transcriptional regulator compare
IAI47_04400 -0.6 -2.3 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_10775 -0.6 -2.1 ribonuclease T compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms