Experiment set1IT082 for Pantoea sp. MT58

Compare to:

Nickel (II) chloride hexahydrate 20 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_21450 +1.3 1.9 general stress protein compare
IAI47_21235 +1.0 1.8 hypothetical protein compare
IAI47_13935 +0.9 2.0 tRNA-Gln compare
IAI47_01780 +0.9 1.7 Fe-S biogenesis protein NfuA compare
IAI47_11415 +0.8 1.3 hypothetical protein compare
IAI47_08445 +0.8 1.8 Holliday junction branch migration protein RuvA compare
IAI47_09675 +0.8 3.2 YoaK family small membrane protein compare
IAI47_16390 +0.8 0.8 tRNA-Leu compare
IAI47_09550 +0.8 3.3 hypothetical protein compare
IAI47_08670 +0.7 1.6 DUF1272 domain-containing protein compare
IAI47_09235 +0.7 1.2 type I DNA topoisomerase compare
IAI47_21665 +0.7 1.6 DUF333 domain-containing protein compare
IAI47_02400 +0.7 1.0 YhdT family protein compare
IAI47_16420 +0.7 5.9 LacI family DNA-binding transcriptional regulator compare
IAI47_04740 +0.7 2.0 hypothetical protein compare
IAI47_06455 +0.7 3.3 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_13765 +0.7 1.3 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_01135 +0.7 0.8 hypothetical protein compare
IAI47_11260 +0.7 2.6 SirB2 family protein compare
IAI47_20250 +0.6 2.0 DeoR family transcriptional regulator compare
IAI47_06900 +0.6 2.6 phosphatase PAP2 family protein compare
IAI47_06470 +0.6 4.9 two-component system sensor histidine kinase RcsC compare
IAI47_12170 +0.6 4.0 flagellar basal body P-ring formation protein FlgA compare
IAI47_12375 +0.6 1.1 acyl carrier protein compare
IAI47_14690 +0.6 3.4 cytochrome o ubiquinol oxidase subunit III compare
IAI47_15605 +0.6 1.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_19050 +0.6 1.6 hypothetical protein compare
IAI47_08345 +0.6 4.2 flagellar type III secretion system protein FlhB compare
IAI47_14695 +0.6 2.2 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_02385 +0.6 4.1 tRNA dihydrouridine synthase DusB compare
IAI47_14130 +0.6 2.3 GNAT family N-acetyltransferase compare
IAI47_12140 +0.5 3.4 flagellar basal-body rod protein FlgG compare
IAI47_14470 +0.5 1.3 YbaB/EbfC family nucleoid-associated protein compare
IAI47_07975 +0.5 2.5 flagellar biosynthesis protein FliQ compare
IAI47_07470 +0.5 1.0 AlpA family transcriptional regulator compare
IAI47_08200 +0.5 1.3 hypothetical protein compare
IAI47_08045 +0.5 1.3 NUDIX domain-containing protein compare
IAI47_09755 +0.5 2.7 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_20510 +0.5 2.3 maltose operon protein MalM compare
IAI47_05065 +0.5 2.3 YfgM family protein compare
IAI47_12145 +0.5 2.7 flagellar basal body rod protein FlgF compare
IAI47_06450 +0.5 1.9 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_09265 +0.5 1.7 LapA family protein compare
IAI47_09845 +0.5 2.9 hypothetical protein compare
IAI47_04750 +0.5 1.4 hypothetical protein compare
IAI47_05015 +0.5 2.7 enhanced serine sensitivity protein SseB compare
IAI47_14960 +0.5 1.9 anti-adapter protein IraP compare
IAI47_16950 +0.5 1.5 GIY-YIG nuclease family protein compare
IAI47_12130 +0.5 3.7 flagellar basal body P-ring protein FlgI compare
IAI47_08160 +0.5 3.1 RNA polymerase sigma factor FliA compare
IAI47_19940 +0.5 1.8 hypothetical protein compare
IAI47_01395 +0.5 2.4 SDR family oxidoreductase compare
IAI47_08280 +0.5 3.5 flagellar transcriptional regulator FlhD compare
IAI47_00925 +0.5 1.7 hypothetical protein compare
IAI47_08015 +0.5 3.1 flagellum-specific ATP synthase FliI compare
IAI47_06360 +0.5 1.0 NADH-quinone oxidoreductase subunit A compare
IAI47_12150 +0.5 3.6 flagellar hook protein FlgE compare
IAI47_12355 +0.5 1.1 hydroxymyristoyl-ACP dehydratase compare
IAI47_21470 +0.5 1.8 DUF2778 domain-containing protein compare
IAI47_19935 +0.5 2.0 hypothetical protein compare
IAI47_12135 +0.4 3.5 flagellar basal body L-ring protein FlgH compare
IAI47_13520 +0.4 2.8 malonyl-ACP O-methyltransferase BioC compare
IAI47_10755 +0.4 0.9 DUF1289 domain-containing protein compare
IAI47_05830 +0.4 1.3 hypothetical protein compare
IAI47_08420 +0.4 2.1 DUF72 domain-containing protein compare
IAI47_08000 +0.4 2.9 flagellar basal body-associated protein FliL compare
IAI47_12435 +0.4 1.8 hypothetical protein compare
IAI47_09510 +0.4 1.6 YdbL family protein compare
IAI47_20290 +0.4 1.6 XapX domain-containing protein compare
IAI47_20630 +0.4 2.1 DUF2534 family protein compare
IAI47_07965 +0.4 1.9 transcriptional regulator RcsA compare
IAI47_09790 +0.4 1.3 DUF1161 domain-containing protein compare
IAI47_10590 +0.4 2.2 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_20945 +0.4 1.8 hypothetical protein compare
IAI47_00515 +0.4 1.1 DNA-directed RNA polymerase subunit omega compare
IAI47_14495 +0.4 1.3 hypothetical protein compare
IAI47_10500 +0.4 3.0 dipeptide/tripeptide permease DtpA compare
IAI47_12125 +0.4 3.0 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_17975 +0.4 1.9 YjbF family lipoprotein compare
IAI47_05525 +0.4 1.2 tRNA-Ala compare
IAI47_20550 +0.4 1.9 ABC transporter permease compare
IAI47_21115 +0.4 1.4 arsenate reductase (glutaredoxin) compare
IAI47_07990 +0.4 1.7 flagellar motor switch protein FliN compare
IAI47_11545 +0.4 1.3 hypothetical protein compare
IAI47_07995 +0.4 3.0 flagellar motor switch protein FliM compare
IAI47_08030 +0.4 2.9 flagellar M-ring protein FliF compare
IAI47_02725 +0.4 1.9 gamma-glutamylcyclotransferase compare
IAI47_15105 +0.4 1.2 hypothetical protein compare
IAI47_12430 +0.4 2.6 hypothetical protein compare
IAI47_16415 +0.4 3.2 nucleoside hydrolase compare
IAI47_17710 +0.4 3.1 glutamate/aspartate:proton symporter GltP compare
IAI47_06780 +0.4 2.8 iron-sulfur cluster carrier protein ApbC compare
IAI47_03745 +0.4 2.2 YecA family protein compare
IAI47_07885 +0.4 0.8 tRNA-Asn compare
IAI47_01980 +0.4 2.1 YheU family protein compare
IAI47_11400 +0.4 2.8 hypothetical protein compare
IAI47_09770 +0.4 2.3 osmoprotectant ABC transporter permease OsmW compare
IAI47_19530 +0.4 1.8 hypothetical protein compare
IAI47_07625 +0.4 1.6 GNAT family N-acetyltransferase compare
IAI47_06965 +0.4 1.1 glycosyltransferase family 2 protein compare
IAI47_10845 +0.4 1.3 major outer membrane lipoprotein compare
IAI47_06480 +0.4 2.8 phosphotransferase RcsD compare
IAI47_09990 +0.4 2.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
IAI47_21520 +0.4 1.6 YgdI/YgdR family lipoprotein compare
IAI47_19850 +0.4 1.2 hypothetical protein compare
IAI47_21800 +0.4 1.7 pyridoxamine 5'-phosphate oxidase family protein compare
IAI47_13850 +0.4 1.3 LexA regulated protein compare
IAI47_12195 +0.4 1.6 DUF480 domain-containing protein compare
IAI47_00770 +0.4 0.5 general stress protein compare
IAI47_08285 +0.4 2.7 flagellar transcriptional regulator FlhC compare
IAI47_11880 +0.4 0.8 hypothetical protein compare
IAI47_15025 +0.4 0.9 transcriptional regulator LldR compare
IAI47_06165 +0.4 1.9 elongation factor P hydroxylase compare
IAI47_20135 +0.4 2.0 6,7-dimethyl-8-ribityllumazine synthase compare
IAI47_07290 +0.4 1.8 hypothetical protein compare
IAI47_09310 +0.4 1.7 YbdD/YjiX family protein compare
IAI47_08465 +0.4 2.3 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_03480 +0.4 1.3 DUF2474 domain-containing protein compare
IAI47_15095 +0.4 1.8 hypothetical protein compare
IAI47_21715 +0.4 2.0 HAMP domain-containing protein compare
IAI47_08005 +0.4 2.2 flagellar hook-length control protein FliK compare
IAI47_05090 +0.4 0.8 hypothetical protein compare
IAI47_15645 +0.4 2.0 polynucleotide adenylyltransferase PcnB compare
IAI47_05735 +0.4 1.4 hypothetical protein compare
IAI47_10185 +0.4 1.4 PTS sugar transporter subunit IIB compare
IAI47_12260 +0.4 1.7 hypothetical protein compare
IAI47_03670 +0.4 1.9 DUF937 domain-containing protein compare
IAI47_17205 +0.4 0.7 PTS phosphocarrier protein NPr compare
IAI47_08470 +0.4 3.0 murein DD-endopeptidase MepM compare
IAI47_06925 +0.4 2.3 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
IAI47_12155 +0.4 2.5 flagellar hook assembly protein FlgD compare
IAI47_05045 +0.4 2.4 type IV pilus biogenesis/stability protein PilW compare
IAI47_21575 +0.3 2.4 sigma-54-dependent Fis family transcriptional regulator compare
IAI47_11735 +0.3 1.1 histidinol-phosphatase compare
IAI47_04735 +0.3 1.4 DUF5375 family protein compare
IAI47_03810 +0.3 1.6 hypothetical protein compare
IAI47_07005 +0.3 1.5 glycosyltransferase family 4 protein compare
IAI47_17330 +0.3 1.8 divalent cation tolerance protein CutA compare
IAI47_17745 +0.3 1.9 LysR family transcriptional regulator compare
IAI47_20260 +0.3 1.6 GFA family protein compare
IAI47_14145 +0.3 1.4 hypothetical protein compare
IAI47_01625 +0.3 1.5 GNAT family N-acetyltransferase compare
IAI47_08090 +0.3 1.3 hypothetical protein compare
IAI47_07905 +0.3 0.5 Arc family DNA-binding protein compare
IAI47_14720 +0.3 1.8 protein deglycase YajL compare
IAI47_21770 +0.3 1.2 Txe/YoeB family addiction module toxin compare
IAI47_15040 +0.3 1.9 LysR family transcriptional regulator compare
IAI47_14365 +0.3 1.4 ABC transporter ATP-binding protein compare
IAI47_19750 +0.3 1.4 GNAT family N-acetyltransferase compare
IAI47_05970 +0.3 1.9 hypothetical protein compare
IAI47_10320 +0.3 0.4 Rrf2 family transcriptional regulator compare
IAI47_04010 +0.3 1.6 cysteine desulfurase sulfur acceptor subunit CsdE compare
IAI47_11605 +0.3 1.2 hypothetical protein compare
IAI47_20540 +0.3 1.3 TetR/AcrR family transcriptional regulator compare
IAI47_13210 +0.3 1.5 glutamine ABC transporter ATP-binding protein GlnQ compare
IAI47_07765 +0.3 1.9 carbon-phosphorus lyase complex subunit PhnI compare
IAI47_14700 +0.3 1.6 protoheme IX farnesyltransferase compare
IAI47_12165 +0.3 2.0 flagellar basal body rod protein FlgB compare
IAI47_02265 +0.3 1.7 alternative ribosome-rescue factor A compare
IAI47_05295 +0.3 1.8 YpfN family protein compare
IAI47_02765 +0.3 2.4 metalloprotease PmbA compare
IAI47_11700 +0.3 1.5 SH3 domain-containing protein compare
IAI47_06030 +0.3 1.2 hypothetical protein compare
IAI47_11500 +0.3 0.8 type VI secretion system tip protein VgrG compare
IAI47_14885 +0.3 1.6 hypothetical protein compare
IAI47_19510 +0.3 1.8 hypothetical protein compare
IAI47_12210 +0.3 2.1 lipoprotein compare
IAI47_14410 +0.3 1.9 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
IAI47_07955 +0.3 0.8 protein DsrB compare
IAI47_07880 +0.3 1.4 hypothetical protein compare
IAI47_08605 +0.3 1.0 hypothetical protein compare
IAI47_15145 +0.3 2.2 beta-Ala-His dipeptidase compare
IAI47_20545 +0.3 1.8 NAD(P)H-dependent oxidoreductase compare
IAI47_20140 +0.3 1.7 phage antirepressor KilAC domain-containing protein compare
IAI47_21355 +0.3 0.8 DUF3606 domain-containing protein compare
IAI47_09980 +0.3 1.7 VOC family protein compare
IAI47_00670 +0.3 2.8 sugar glycosyltransferase compare
IAI47_08145 +0.3 2.6 flagellin FliC compare
IAI47_11300 +0.3 1.2 stress-induced protein YchH compare
IAI47_13565 +0.3 1.8 molybdate ABC transporter substrate-binding protein compare
IAI47_17250 +0.3 2.2 cell division protein ZapE compare
IAI47_13255 +0.3 1.5 imidazolonepropionase compare
IAI47_14910 +0.3 1.7 recombination-associated protein RdgC compare
IAI47_09760 +0.3 2.1 purine permease compare
IAI47_06400 +0.3 0.8 NADH-quinone oxidoreductase subunit J compare
IAI47_17930 +0.3 2.2 alkaline phosphatase family protein compare
IAI47_17080 +0.3 1.6 transcription elongation factor GreA compare
IAI47_20420 +0.3 1.7 FAD:protein FMN transferase compare
IAI47_17685 +0.3 1.5 AraC family transcriptional regulator compare
IAI47_09840 +0.3 1.5 glycosyltransferase family 4 protein compare
IAI47_17200 +0.3 2.1 RNase adapter RapZ compare
IAI47_09950 +0.3 1.7 hypothetical protein compare
IAI47_19240 +0.3 1.9 SDR family oxidoreductase compare
IAI47_03880 +0.3 1.1 PTS sugar transporter subunit IIB compare
IAI47_00115 +0.3 2.2 MFS transporter compare
IAI47_10650 +0.3 1.2 hypothetical protein compare
IAI47_01880 +0.3 2.1 DUF2531 family protein compare
IAI47_20980 +0.3 1.5 hypothetical protein compare
IAI47_07475 +0.3 0.3 hypothetical protein compare
IAI47_17285 +0.3 0.7 entericidin A/B family lipoprotein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms